LOC111192897


Basic Information

Item Value
gene id LOC111192897
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 919174 ~ 927544 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671162.1
atgtctAGAACTGAAGAATCATCAGCCTCCCTGAGAATGCTGGTTGGTGGTTCTCGCTGTTCTGGtagagtggaggttcttcatggagagagctggttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcaagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagaggagtttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTGCAGGTAAGAGCTGCATTTGTATGAGGTTGGTGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatagAGGACAGTGGGGAACAGTTTGTGGTGATGACTGGGATATGAGAGATGCTGCAGTTGTGTGTAGAGAGCTGGCCTGTGGAGAGGCTGTAGATGCACTGAGTGAAGCTCATTTTGGATCAGGATCAGGACCAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAGTCTACACTGAAGAACTGTAGATCAGCAGTATGGGGTAAACATGATTGCAATAAAACTCACAATTCTGGTGTCATCTGTTCAGGTAAGAGTCAGGTTGGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671162.1 True 675 mRNA 0.48 5 919174 927544

Neighbor

gene id symbol gene type direction distance location
LOC111192896 NA coding upstream 4869 912891 ~ 914305 (+)
LOC111192895 NA coding upstream 6862 893369 ~ 912312 (+)
LOC111192924 NA coding upstream 74484 841037 ~ 844690 (+)
LOC111192892 NA coding upstream 109177 809234 ~ 809997 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding upstream 138377 749881 ~ 780797 (+)
LOC111192898 NA coding downstream 2066 929610 ~ 943921 (+)
LOC111192900 NA coding downstream 73343 1000887 ~ 1007827 (+)
cracr2a NA coding downstream 469654 1397198 ~ 1404499 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding downstream 703329 1630873 ~ 1693966 (+)
ankrd16 ankrd16 coding downstream 884656 1812200 ~ 1825435 (+)
LOC111192927 NA non-coding upstream 2362 914900 ~ 916812 (+)
LOC111192928 NA non-coding upstream 60665 853711 ~ 858509 (+)
G61016 NA non-coding upstream 83901 833987 ~ 835273 (+)
G61011 NA non-coding upstream 118304 800649 ~ 800870 (+)
G60996 NA non-coding upstream 178276 740691 ~ 740898 (+)
LOC111192923 NA non-coding downstream 120253 1047797 ~ 1049056 (+)
LOC111192863 NA non-coding downstream 122586 1050130 ~ 1051090 (+)
G61085 NA non-coding downstream 577799 1505343 ~ 1505817 (+)
G61100 NA non-coding downstream 681581 1609125 ~ 1621557 (+)
G61131 NA non-coding downstream 831294 1758838 ~ 1761182 (+)
LOC103045537 NA other upstream 294165 599659 ~ 625009 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 360594 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 772400 144189 ~ 146774 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 518091 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 787273 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 993851 1921395 ~ 1935499 (+)
G61575 NA other downstream 2369002 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 4813011 5740555 ~ 5765785 (+)

Expression


Co-expression Network