LOC111192898


Basic Information

Item Value
gene id LOC111192898
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 929610 ~ 943921 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671163.1
ATGTGTTCTGGCAGTGTGAGGTTGGTGAATGGTGGGAGTCGCtgtgctgggagagtggaggttcttcatagAGGAGagtggggaacagtgtgtggTAATAAATGGGATATGAGTGATGCTGCAGTGGTGTGtagagagctgggctgtggggAGGCTGTAGATACATTTCATGAGTCTCACTTTGGACCAGGATCAGGACCAATCTGGTTGGATAATGTGCACTGCAGTGGCTCTGAGTCTACACTGATGAACTGTAAATCAGCAGGATGGGGTAAACATAACTGTGATCATTCTAAAGATGCTGGAGTCATCTGTTCAGGAGTCAGGCTGGTTGAAGGTTCTCACTgctctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgatgctgcCTTTAACCAGCGGAatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgctcccatgataatgatgtgggactggtgtgttcagGCAGTGTGAGGTTGGTGAATGGTGGCAGTCACTGTGCTGGATTAATAGAGGTTTTTCACAGAGGACAGTGGGGAACAGTTTGTGCAGTTGGTATATCTACAATAGCAGGTTTTGTCGTGTGTAAAGAGTTGGGCTGTGGAGAACTATTTAAAGGTGAAGCAACTTTACCAGGATCTGGACCGATCTGGATGAGTCATGTGAAGTGCAGTGGATCAGAGTCTACACTAAAATACTGTGAATCATTAGGATGGGGTGAACACAGCTGTAATCATGATATGGATGCTGATCTTATCTGTTCAGGTCACAGGGTATCCAGACTTGCTGATGGTCCTCATGTTTGCTCTGGAAGAGTGGAGATTCTTCATGGAGGGTCCTGGttcacagtgtgtgatgctgactttgaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagAGAAGCTTCAGTGTAGAGGAGATGAATCTGAGATTACTCTTTGTCCGATAACAtcttcacacaaacacaactgcTCCCATGATAATGATGTGGGACTTATATGTTCTGGTCACACTCAGGCTCGGTTGATGAACAGCTCAGACTCCTGTTCTGGTCGAGTGGAGCTCCAGTACCTCAGTGAGTGGGGTACAGTGTGTGATGTAAGCTGGGATATGAGAGCTGCCAGTGTCCTCTGTGCTCAGCTGAAGTGTGGGAGTGCTGTGGCTGTGTTGGGGTCAGACTGGTTTGGGGAGGGGAGTGGCCGGATCTGGGCTGATGTGTTTGATTGTCAGGGGAACGAAACATACCTGTCAAAATGTCCCATTTCATCATGGAGTCGAACTGCATGCGCTCATAAACAGGATGTTGGAATTATCTGCAGTGATTCTTCTCTGGCGTCTCATGAGGGAGGAGTGAGGTTGTCTGGAGGGatggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGTACTCCTTGAGTGAGTCTGAGTCCTCTGTGGTCTGCAGAcagctgggctgtggttctgTACTCAACATCTCCAGCTCCTCTTCATTCAGTCCTGAACACAGCTACAAGTGTGTGACGGGTTTCAACTGCTCTGGGAGTGAAGCTCATCTGAGGAACTGCAGCAGCTCACAAGCAGTTAACTGCAGCTCCACAGAAAAGCTCTACATCACCTGCTCTGGCCGTAGCTCCATCAGGCTGGTTGGTTCTGGAGGAGACTGTGCAGGAAGGCTGGAGGTTTTCCACAGTGGATCATGGGGGACAGTGAGTGATGAATTGTGGGATATTGAGGATGCTCAGGTGGTCTGCAGACAGTTGCAGTGTGGAGTGGCCCTCAGTGATCCAGTTCCAGCCCGGTTTGGATCTGGAACTGGACCCATATGGCTGAATgaggtggagtgtgaggggAAGGAGGCGTCTCTGTGGAACTGCAGATATCAGCTGTGTGGAGAGGATGAATGTGGACACAAGGATGATGTAGGAGTCGTCTGCTCAGAGTATAAAGAGATCAGACTCACTGAGGGCTGTGAGGGGAATCTGGAGGTGTTCTATAATGGAACCTGGGGGAATGTGTGTAACAATGGGATGGATGTAGAGACAGTAGGTCTGATCTGTCGAGAACTGAACTGTGGAAGAAGTGGGAGTGAGAGAGCTACCAAAGCGAGAGTGGAATCAGCTCCTAACTGGCTGGATGATGTGAAATGTAGGAAACACGACTCCACTCTGTTTCACTGTCCATCTTCTTCCTGGAGTCAGAACAACTGTGATAACAGCAAAGAGGTGACTCACATTACCTGCTCAGGGGAGAAGAAACAGCTTGCACTGGAAAATCATCTAAAATGCTCCTTATTTCCAAACCAAAGCCAGTGCTCAAAGCACCTACCTCTACAGCTGAAAGGAGGAGAGGGAAGCTGCTCTGGGAGGCTGGAGGTGTATCATAATGCTGAGTGGGGGTCTGTATGTGGTGATCTGTGGGACATCAGGGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGGCCGGCGCTGAGTGCTAATAGAAGTGCTGCTGATGGTTCTGGTGGAGGAACTATCTGGATGAACAGAGTGAAGTGTAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCATTCCCTGAAGAACCACACTGACTGCTCCCACAGCGCTGGAGTCACCTGTGCAGacacaTTTGTGAGTTTAACTTTTTCATCCAAATCAACTACAAGTTACACCACAGTTCCAGTACAGCTAACAGAGATGCAGACAGCCCCTCCTTCAACAAATCCATTATCAACTTTTCCATACATCTATCCAGTGTCTCTCCTGGTTCTGGGATCTGTGCTCTTCCTGGCCTTAGTGCTTCTGGTTGTGCTGTTTTATCAGAACAGAGTGCTCAGGAGAGTGATCTCTAAGAGGAGGAAGAATAAAGTGACTGAGGCAGTCTATGAAGAGATTGACTATAAACGTGTCAATAACAGATATACTAAAAGAGCAGGGGGAGTCCTCTCTAAAGAACATAATTATGAGGATGTAAATGAGGAGCTTCTCTCAGGTGAGGTGGGAAAAGAGAACACAACAGAGGACTATGATGATGCCATCCCTGCTTTACAGACACCTGACAGATTATCaaaagaCAATGTGGAGAtgtatgatgatgccatacctGCTGGAGAGAACCCAAACATAACTACAGCAGTGTGCACCCCAGAGGGCTATGATGATGTCGCATCTGGGCAGGATGTAGGAGGTGTAGCAGGTGATGGAGACTATGGAGACATTGTGGAGGTGGTAAAGGGGCCTGAGGCAAATGGATAGATCATCTAACAGAGACTGTTACAAAGAACAAAaccaagggttaaaaaaaatgccatttctTTTTTAGGTATCCTTTTGTCCTATTttgtaacaatattttttttatttgcacttcaaaAACATTCATAATACATATAAAGTAGACAGTggttacattaaatacattagctTTGATATTAGCTTTAATGGTTTGTCaagtttaaaactgtttattgccAACTTGCCAAACATCCTTTTTCTTGCTTTCCTATTGAATGTATCTCTCATTGAGTTTCTAATGTTGTGTATTCAGTATTATGCTCACATGCATTGCTTTCATTCGCTAAAATGATCAGATTAACGTTTAtattttcttagattttttaacaaaaaacaacaaatccaAACTATGCAGTGCTGCAAAGTATCTGCatataatgtgtttg

Function

GO: NA

KEGG:

id description
K06545 CD163; CD163 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671163.1 True 3935 mRNA 0.47 19 929610 943921

Neighbor

gene id symbol gene type direction distance location
LOC111192897 NA coding upstream 2066 919174 ~ 927544 (+)
LOC111192896 NA coding upstream 15305 912891 ~ 914305 (+)
LOC111192895 NA coding upstream 17298 893369 ~ 912312 (+)
LOC111192924 NA coding upstream 84920 841037 ~ 844690 (+)
LOC111192892 NA coding upstream 119613 809234 ~ 809997 (+)
LOC111192900 NA coding downstream 56966 1000887 ~ 1007827 (+)
cracr2a NA coding downstream 453277 1397198 ~ 1404499 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding downstream 686952 1630873 ~ 1693966 (+)
ankrd16 ankrd16 coding downstream 868279 1812200 ~ 1825435 (+)
trnay-gua_2 NA coding downstream 868850 1812771 ~ 1812858 (+)
LOC111192927 NA non-coding upstream 12798 914900 ~ 916812 (+)
LOC111192928 NA non-coding upstream 71101 853711 ~ 858509 (+)
G61016 NA non-coding upstream 94337 833987 ~ 835273 (+)
G61011 NA non-coding upstream 128740 800649 ~ 800870 (+)
G60996 NA non-coding upstream 188712 740691 ~ 740898 (+)
LOC111192923 NA non-coding downstream 103876 1047797 ~ 1049056 (+)
LOC111192863 NA non-coding downstream 106209 1050130 ~ 1051090 (+)
G61085 NA non-coding downstream 561422 1505343 ~ 1505817 (+)
G61100 NA non-coding downstream 665204 1609125 ~ 1621557 (+)
G61131 NA non-coding downstream 814917 1758838 ~ 1761182 (+)
LOC103045537 NA other upstream 304601 599659 ~ 625009 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 371030 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 782836 144189 ~ 146774 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 501714 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 770896 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 977474 1921395 ~ 1935499 (+)
G61575 NA other downstream 2352625 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 4796634 5740555 ~ 5765785 (+)

Expression


Co-expression Network