LOC111192900


Basic Information

Item Value
gene id LOC111192900
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1000887 ~ 1007827 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671164.1
CCTCCTCTGATTTGTCACTGAAAATGTTTGATGATTTCCTCTCCTCTTTCTAATAAGGTCATAGTGAGTGTGATTGGCGGCTgtggggtctctctctctctctctctctctctctcaggttctTCAGTCTCTCTGGGGGAGTGGAGGTGAAGCTTGTTCTGCTGCTGAGTTGAACGGAGTGTGTGCAGGTCAGAGGGAGATGGACAGCTGCGTGCTTCTCATTCTTCTGTCCTCCACAATCACACTCACCACAGCTGACGGTGTGAGGTTGATGGATGGTGGGAGTCGCtgtgctgggagagtggaggttcttcatagAGGGGagtggggaacagtgtgtggTAATAACTGGGATATGAGAGATGCTGCAGTGGTGTGtagagagctgggctgtggagaGGCTGTAGATGCACTGAGTGAAGCTCATTTTGGATCAGGATCAGGACAAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAATCTACACTGAAGAACTGTAGATCATCACTGTGGAAAAAACATGACTGCCATCCAACTCAAATTTCTAGGGTCATCTGTTCAGgaGTCAGGCTGGTTAATGGTTCTCACTGttctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgctcccatgataatgatgtgggactggtgtgtgcaggtgagaactgcatgtttaGCAGTGTGAGGTTGGTGGATGGTGGCAGTTGCTGTGCTGGGATagtggaggttcttcatagAGAAGAGTGGGGAACAGTATGTGGTAATAACTGGGATATGAGAGATGCTGCAGTGGTGTGtagagagctgggctgtggagaTTCTGTAGATGTACTGAGTGAAGCTCATTTTGGATCAGGACCAATCTGGATGGATAATGTGGACTGTAGTGGATCAGAGTCTACACTGAAGAAATGTCAAATGAGAGGATGGGGTAAACATAACTGTAATCACTCTACAGATGCTGGAGTTATCTGTTCAGGTAAGACACTGTAAATATCAAAAAGTGTCAGGCTGGTTGGAGGTTCTCACTGttctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggtgcagctgcttttggtagaggggagggtcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671164.1 True 1399 mRNA 0.49 5 1000887 1007827

Neighbor

gene id symbol gene type direction distance location
LOC111192898 NA coding upstream 56966 929610 ~ 943921 (+)
LOC111192897 NA coding upstream 73343 919174 ~ 927544 (+)
LOC111192896 NA coding upstream 86582 912891 ~ 914305 (+)
LOC111192895 NA coding upstream 88575 893369 ~ 912312 (+)
LOC111192924 NA coding upstream 156197 841037 ~ 844690 (+)
cracr2a NA coding downstream 389371 1397198 ~ 1404499 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding downstream 623046 1630873 ~ 1693966 (+)
ankrd16 ankrd16 coding downstream 804373 1812200 ~ 1825435 (+)
trnay-gua_2 NA coding downstream 804944 1812771 ~ 1812858 (+)
LOC103022887 gdi2,LOC108436005,LOC108279819,LOC107754057 coding downstream 819013 1826840 ~ 1841427 (+)
LOC103039262 NA non-coding upstream 48402 845633 ~ 952485 (+)
G61023 NA non-coding upstream 51803 841595 ~ 949084 (+)
LOC111192927 NA non-coding upstream 84075 914900 ~ 916812 (+)
LOC111192928 NA non-coding upstream 142378 853711 ~ 858509 (+)
G61016 NA non-coding upstream 165614 833987 ~ 835273 (+)
LOC111192923 NA non-coding downstream 39970 1047797 ~ 1049056 (+)
LOC111192863 NA non-coding downstream 42303 1050130 ~ 1051090 (+)
G61085 NA non-coding downstream 497516 1505343 ~ 1505817 (+)
G61100 NA non-coding downstream 601298 1609125 ~ 1621557 (+)
G61131 NA non-coding downstream 751011 1758838 ~ 1761182 (+)
LOC103045537 NA other upstream 375878 599659 ~ 625009 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 442307 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 854113 144189 ~ 146774 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 437808 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 706990 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 913568 1921395 ~ 1935499 (+)
G61575 NA other downstream 2288719 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 4732728 5740555 ~ 5765785 (+)

Expression


Co-expression Network