LOC107197570 (LOC108442310)


Basic Information

Item Value
gene id LOC107197570
gene name LOC108442310
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5421768 ~ 5423304 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671166.1
ATGCTGCTGAACCACCTGAAGCATCTCCTGCTCCTGTATGTCTTCTCCTGTCCCCAGTGCTCGTTCACCCACACTCAAGAGAGATACTTGAAAAGCCATATCAAAAAGATCCACTCTGTACCTGCGGAGGAGAGCAGTAAAGAGCCACACCTGTGCCCGATATGTGGTAAAGGCTTCCGCTTCCCCGGCATGCTGAAAGCCCACAAGCGCACCCACACGGGTGAGCGCCCTTTCCAGTGCACAGCTTCTCACTGTGGCCGCCGCTTTTCGCACATTCAGGCTTTGCGCCGTCATCGGCTCACGCACGTGCCCAAAGCCTCTCATAAAGCTCCTCAGGAAGAAGTGATGGAGAATGAGGAGGCTCAGAGCCAAGAGAGCGAAATGTATGACTGCCTCTACTGCTGGGAAAGCTTCAGCTCACTCAGCGCTCGCCGGGACCACCACAAGACCCACTCAGAGAAGGAGGTGAACCGCTGCAGCGACTGTGGTAAGTTGCTGAGCTGCCAGGCTGCTCTCATCAGGCACAAGCGAGGCCACCTGGAGAACCAGCCACACAAGTGCACTATCTGTGACGCAAGCTTCTCGAACCTGACCAGTTTCAAGCGTCACATGCTCACCCACAAGTCTGAGAGGCCGTACCACTGCAGCTGCGGCAAGGGCTTTACCTACAGGGGCGCCTTGCTATCCCATCAGCGCACCCACACAGCCGAGAGGCCCTACTGCTGCCCCCACTGCAGCAAGACCTTCCTTTATCCTGGGGCACTGAGGAAGCATGAGTGGACCCATTCTAAAGAAAAGCCCTACCTGTGCTCACACTGTGGCAAAAGCTTCAAAAGGGAAAGGACACTGCGTGCTCACATGGCTGGACACACCACAGAGAAAATCTTCAAGTGCTCCCTCTGTGACAAAACGTTCGCCTACAAGGCCAGCCTTACCAGGCACGAGCTCACCCACACCGGCGAGAGGCCTTTTCTCTGCTCAGAATGCGGCAAGACCTTTTTCTCTTTCGGTGAACTACTGAAGCACCAGCGCTATCACACGGGACACAAGCCCTTCCAGTGCGCGCACTGCGACAAGAGCTTCACGCAAGCCTGCTACCTCCAGCTGCACACCCGCTACCACACCGGAGTGCGTCCTTACACCTGCTCTCAGTGCGGCAAAAGCTTCTTCACGTCCTGTCGGCTCAAAAGACACATGCAGATCCATACAGGGGACAAGCCTTTTGAGTGCAGGGAGTGTGGGAAGAAATTCAGGCAGGCGTACGTGCTCAAAGTGCATCAGCGGATCCATGGAGGAGGCAGAACTGAGAGTGTCCTAACCGATAATttgttttgagattttttttttttgaacagaCAATAACATCTTTGACacgtt

Function

NR:

description
PREDICTED: zinc finger protein 37 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671166.1 True 1377 mRNA 0.55 2 5421768 5423304

Neighbor

gene id symbol gene type direction distance location
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 160217 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 720333 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 1322379 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 1347205 4048242 ~ 4074563 (+)
atxn10 atxn10 coding upstream 1452812 3956662 ~ 3968956 (+)
LOC111192904 NA coding downstream 589542 6012846 ~ 6015114 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 793507 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 986613 6409917 ~ 6426277 (+)
pus7l NA coding downstream 1004702 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 1178079 6601383 ~ 6632805 (+)
G62086 NA non-coding upstream 60983 5360545 ~ 5360785 (+)
G62069 LOC103042505,LOC108425390,LOC108280006 non-coding upstream 106566 5311905 ~ 5315202 (+)
G62036 dock4,LOC108425388 non-coding upstream 418864 4999241 ~ 5002904 (+)
G62030 NA non-coding upstream 434050 4987422 ~ 4987718 (+)
G62004 NA non-coding upstream 586296 4835272 ~ 4835472 (+)
G62098 NA non-coding downstream 8772 5432076 ~ 5432368 (+)
G62103 NA non-coding downstream 24524 5447828 ~ 5454163 (+)
G62146 NA non-coding downstream 102474 5525778 ~ 5527065 (+)
G62162 NA non-coding downstream 219356 5642660 ~ 5652784 (+)
G62174 NA non-coding downstream 271093 5694397 ~ 5698893 (+)
G61575 NA other upstream 2117770 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 3486269 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 3612838 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 3940350 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 4378452 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 317251 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 358787 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 558932 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 1427926 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 2978536 8401840 ~ 8415039 (+)

Expression


Co-expression Network