LOC111192904


Basic Information

Item Value
gene id LOC111192904
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6012846 ~ 6015114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671167.1
ATGGCTGTGCGATACGGAGGATCGGGATTTTATGAATACCATCGCCTTTTCTCCGCACAGGCAGCTGCGCGCCTGCAGCAATGGAACATCGCTACCTATTGGGGCACCCTGAATCTCGAGCTTTATTGCCGTATTTTCGCTGGCCGTCCTTCCCTCTCCTGCGAACTGTGCGGCTCACGCCCGCCCTTCCTGCCCCCACCATCCTCCCAAGTTCGGGCGGAGCTGACTGCTCCGCTATCTGTCAACCCCGCAGAATCTGAACCCGACGTTGTCTCCTCTCTCCTCGCCAAGGAGGTTTCTGATGGTTTCATGGTCGGCCCCTTTTCCTCTCCCCCTTTTTCTACTTTTCGGATTAATCCCATCGGCATTGCCACGCGCAAATACTCGGGGAAGAAACGCCTCATCATTGACTTATCCGCTCCCCATGGCTCTTTTGTTCCTTCCGTCAATAGCCTGGTGCCCAGCGACGAGTTTTCTTTGTGCTATGCCCGCGTCGATGATGCGATTTCCCTCATCAAACTCGTCGGACGCGGCACTTGGATGGCCAAAGCAGACATCGTCTCAGCTTTTAAGGTCTTACCCATCCATCCTGACTTTTGGCACCTATTTTGCGTGCGCTGGAAGGGGCGTTACTACTTCGCCACCCGGCTCGTTTTCGGCTGTAAGAGCAGCCCCAAGATATTTGACTGTTTTGCTGAGGCACTGTCCTGGATCCTGCTCAACTCTGTCTCGTTTCCAATTTCAGAAATTCAGGACCTTGGCTCCACTCTCAGACCCACATCCAACCCCAGTTCCACCTTATTTGGACACCGTCTTCCCGCTGCACACGCCTTCTACAATTTGACTCTCCAATCCCAGGACCTCATTCTTAACGCCGTTTCCCCCAACACTCTTTCTACTTACTGGACAGGATGGCAATGTTTTCGTCGGTTCCAcgtttttctttctatctcctTTCCCTCCTTTGATCTATTTAGCACGGCCAACTTCCTCACCTTTACCAGCTCCCGCCTCTACATTCGATCATCCTCCCTCAAAGTTTACCTGTCAGCTATCAACTTCTTTCATAAACTCCTCCATGGCTCACCTCATCCTTTCGTTAGTCATCCTCAgatcacactgcttttaaaaggcattaaaaGGAGCGAACCTCCTCTCACTCACAAACGTCTTCCCCTAACCTCTCACATTCTCTCCTGCTGCCTTTCCACTCTACGTTCCAGACAATATTCTCCCAGCATTTCTCAAACCTTAGAAGCTATGTTTTTGCTAGCTTTCTTTGGTTTTCTCCGAGTTTCAGAATTTACCACTCCTTCCACCACTCATCATCCCTCTCTCCACCcctgtctgtctgatatcaccATCCTGGACACCGACACCCTCATTTTCAACATCAAGAGAAGCAAAACTAACCAATTTGGTATATATACACCAGTTTACATATTCAGACTTCATTCATCTCTCAGTCCTTACGAACCTCTCCAGCTCTACCTCCAGTTCCGTCTCTCCCAAGGTGCTCGTCCTCATGACCCCCTGTTTATCAGTGAATCCGGTTCCCCTGCTACCAGTCATTGGTTTCATTTTCACCTCAAGAACGTACTCTCCCTCACTGGATTTAACCCCGCACATTTCTCCGCCCATTCTTTCAGAATCGGAGCAGCCACTACAGCTTCTCACCAAGGTTTACCTGACCACACCGTTCAGATCCTCGGCCGCTGGTCCTCCCATGTCTATCACAGCTACATCCGCACTCACGCCCGAGACCTGTTCACTGCCCACGAACTTCTAGCTTCTGTATTTCCTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671167.1 True 1806 mRNA 0.50 4 6012846 6015114

Neighbor

gene id symbol gene type direction distance location
LOC107197570 LOC108442310 coding upstream 589542 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 751295 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 1311411 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 1913457 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 1938283 4048242 ~ 4074563 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 201697 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 394803 6409917 ~ 6426277 (+)
pus7l NA coding downstream 412892 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 586269 6601383 ~ 6632805 (+)
zcrb1 zcrb1 coding downstream 680476 6695590 ~ 6703894 (+)
G62258 NA non-coding upstream 14617 5998008 ~ 5998229 (+)
G62224 NA non-coding upstream 232762 5779695 ~ 5780084 (+)
G62174 NA non-coding upstream 313953 5694397 ~ 5698893 (+)
G62162 NA non-coding upstream 360062 5642660 ~ 5652784 (+)
G62146 NA non-coding upstream 485781 5525778 ~ 5527065 (+)
G62276 NA non-coding downstream 19053 6034167 ~ 6040514 (+)
G62280 NA non-coding downstream 30060 6045174 ~ 6045425 (+)
G62284 NA non-coding downstream 59175 6074289 ~ 6074626 (+)
G62287 NA non-coding downstream 156099 6171213 ~ 6172168 (+)
G62309 NA non-coding downstream 162110 6177224 ~ 6177505 (+)
c7h12orf75 NA other upstream 18852 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 45111 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 247061 5740555 ~ 5765785 (+)
G61575 NA other upstream 2708848 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4077347 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 836116 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 2386726 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 2511104 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 3416385 9431499 ~ 9440564 (+)
G63051 NA other downstream 3631465 9646579 ~ 9650087 (+)

Expression


Co-expression Network