LOC111192905


Basic Information

Item Value
gene id LOC111192905
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6735157 ~ 6736574 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671168.1
CAAATTCGTAACCTTGGGAAAGGATGCTTTCAGATTAAGAGTGAGCAGTCAGCTCAGTGGTATTGTGTGGATCTGGGAGATGACCAGAGATTTCCATCTTGTGAGTGTCCCTCCTTCAGTTAACATTTCTGCCCTGCAAACATCTGTTTGccatttttaataattcagaATATACATGGACCATGTTGAGTTCCAAGTACACAAACAGTCCATATGTGACATTAGATGTGGATGCTGTGTTAAGTGAAACCCAGAATGGCCAAGCAGAGAATGCAGTGGATGAAGACACAGATtgtatctctttattttccacCAAGGAACACTCCATTCAAAAGACATACCCGAGGTGTACTGAAAATAATCCAAGCAATGCCTGTGTTAACAGTGCTCAGCAATTCCTGCGAGAAAAGCTGAAGATTCTTCAGGATGTTTCATACCTCTGCAGAGATACAAAAGCATTGAGTGACGCTGCTGCAGTTGTACATAGTTTGGCAGACAACTTGAAAAGTTATATCCCAAAAGAAAACAGCCTGCCACTCATCAGCACAACACAAGAGACTGCAAAGCAAAAACTACGCAAATTACCAAAACAGCGCAAAAAGATACAGAGTCAAGCTAGAAAAACAAGATTTGGAAACAACTACAGATGTGGAAAAAGTGCTGATCAGCCAGCTGCAGAGATAGACTGCATTGTAATCCATGAAACAAGAAAAAGTGCTGTTCAGCCAGGTGAAAAGATTGAGAAAGCTTGCACGTACCATACAGCACCCCGTGTCCCAGCACAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671168.1 True 788 mRNA 0.42 4 6735157 6736574

Neighbor

gene id symbol gene type direction distance location
LOC111192868 NA coding downstream 11627 6722102 ~ 6723530 (-)
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding downstream 590949 6139962 ~ 6144208 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding downstream 615391 6096340 ~ 6119766 (-)
abcc9 abcc9,LOC108439416 coding downstream 1008874 5664901 ~ 5726283 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding downstream 1071876 5658448 ~ 5663281 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding upstream 114594 6851168 ~ 6855742 (-)
LOC103043330 NA coding upstream 194589 6931163 ~ 6955225 (-)
tfec tfec coding upstream 725253 7461827 ~ 7533411 (-)
utp20 utp20,LOC107583990,LOC107576235,LOC107735256 coding upstream 816691 7553265 ~ 7602288 (-)
LOC103047295 LOC108425379,LOC108280009 coding upstream 1034162 7770736 ~ 7801165 (-)
G62492 NA non-coding downstream 22277 6712063 ~ 6712880 (-)
G62486 NA non-coding downstream 36543 6695658 ~ 6698614 (-)
G62412 NA non-coding downstream 172860 6562072 ~ 6562297 (-)
G62404 NA non-coding downstream 203334 6430582 ~ 6531823 (-)
LOC111192939 NA non-coding upstream 9 6736583 ~ 6738038 (-)
G62505 NA non-coding upstream 21355 6757929 ~ 6758476 (-)
G62558 NA non-coding upstream 365501 7102075 ~ 7102306 (-)
G62582 NA non-coding upstream 497629 7234203 ~ 7234439 (-)
G62584 NA non-coding upstream 500617 7237191 ~ 7240299 (-)
LOC111192938 NA other downstream 2032 6727874 ~ 6733125 (-)
pphln1 pphln1,LOC108279830 other downstream 39768 6633010 ~ 6695389 (-)
G62377 NA other downstream 360177 6374469 ~ 6374980 (-)
G61942 NA other downstream 2112580 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 2309001 4335118 ~ 4426156 (-)
LOC111192940 NA other upstream 50768 6787342 ~ 6859670 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other upstream 880961 7617535 ~ 7619432 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 1429911 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 2882087 9618661 ~ 9622788 (-)
G63217 NA other upstream 3578225 10314799 ~ 10411231 (-)

Expression


Co-expression Network