fam200b


Basic Information

Item Value
gene id fam200b
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14997118 ~ 15000582 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671175.1
ATGACGTTCGGTGAGAAGATGGCGAAACGCAAATACAGCCCGGAGTATCTGAAATGTGGGTTTTCGTTCATTGAGGACAAACAGGGTCAGAAACCCCAGTGTGTCATTTGCAATGAAGTGCTGGCACATGCGAGCATGAAACCCTCCAAACTAATGAGACATCTACAAACGAAACATCCCGCATATAAGGACAAGCCGGTGGAGTTTTTTCAAAGACGACTTCATGAGCTAAAGGCATCAAAGAAGTGTCTGACAGCATCGTGCTCCAAACAAGAGCAAGCGCTCCGGGCGTCTTACCACGTAGCTTTCCGTATTGCGAAGGCAAAGAAACCCCACACAATAGCCGAAGAGCTGATTTTACCTGCTGCAATGGACATGGTAAGAGAGGTGCTGGATGGTGCAGCGGCAGACAAACTTAAAACAATACCCCTGTCCAACGATACTATAGCGTGGCGTATTAAAGACATGTCTGATAACATAAAACAGCAGACTACAGCTCGCGTCCAGACAAGCCCATACTTCGCATTACAGATGGATGAATCCACGGACATAGCTAACCATGCTATTTTACTGGTTTATGTGAGACATGTGTGGGATGGTGATTTGCAGGAGCAATTTCTCTGCAGCAGAGAACTCCCCACCACTACCAAAGCAGAGGACATTTTCAACTCCGTGGACTTGTACTTGAGCTCAGTGGGTTTAAGCTGGGAATACTGCATTGGAATCACAACTGACGGCGCTGCCTCCATGACCGGGAAACACTCAGGTGTGGTGAAACAAATTCTGACGAGGGCACCTAATGCGACTTGGAACCACTGCTTTTTGCACCGAGAGGCACTGGCGGCTAAGAATATGGTTCCTGATCTTAATGAAGCTTTGCAAGATGTCATCAAAGTGGTGAACCACATAAAACGGAGTGCTAAGAGCAGCCGCTGCTTTTCAAATCTATGCAAAGATTTGGGCTCTGAGCACATGCAGGTGTTGTATCACTCCGAAGTGCGCTGGCTGTCGAGGGGTAAGGTCTTGTCACGCTTTAACGAACTAAAAACAGAAATCGCCACCTTCCTCTCAGAGAACAACTCCGTATatgctgaactgtttgacaaTAACACCTGGCTCGCACTTGTTGCATATCTTGCTGATATTTTTGAGCACCTCAACGCGTTAAACGTGTCTATGCAGGGAAAAGGACACAACATTTTTGAACAGTCAGACAAAGTTGTTGCGTTCAAGAAAAAGATCACACTGTGGGTAAATCATTTATCCAAAGACAGACTGGACATGTTTCCAAACGTTCGCCAGGAAGTACAGCAGCTGGACACCACGGCCaaaaattacctgaaaaaaaCGATCAAGGAGCATCTCAGTAAACTTCAAGCTCGGTTTGACGACTACTTCCCTGAGAGGCACGGAGATAATAGTAATGCCTGGATACGCGACCCTTTCAGCGTCAACATGGAAAGCGTCATGTTACCAAGCAACGAAGAACATCAGCTGGTGGAGCTGTCATGTGACCAGACACTGAAAAAGAGATTCGGCGACaacccaagtacacctaaGCTTGAGGTGAACAGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671175.1 True 1578 mRNA 0.47 2 14997118 15000582

Neighbor

gene id symbol gene type direction distance location
LOC111192957 NA coding upstream 269763 14721032 ~ 14727355 (+)
taf3 taf3,LOC107748456,LOC107555823,LOC107675973 coding upstream 800572 14102939 ~ 14196546 (+)
atp5c1 atp5c1,LOC107728502,LOC107748457 coding upstream 898572 14090332 ~ 14098546 (+)
itih2 itih2,LOC107748478,LOC107666937 coding upstream 916005 14056785 ~ 14081113 (+)
itih5 itih5 coding upstream 954316 14015116 ~ 14042802 (+)
LOC103045633 lrrc4.1,LOC108432552,LOC107699068,LOC107557314,LOC107732976,LOC105904105 coding downstream 421419 15422001 ~ 15426787 (+)
LOC111192874 NA coding downstream 563435 15564017 ~ 15571205 (+)
ccdc87 NA coding downstream 903760 15904342 ~ 15923062 (+)
LOC103046551 LOC108432559 coding downstream 923144 15923726 ~ 15953932 (+)
LOC103027800 LOC108432561 coding downstream 997619 15998201 ~ 16101524 (+)
G64057 NA non-coding upstream 5110 14991203 ~ 14992008 (+)
G64047 NA non-coding upstream 38850 14952735 ~ 14958268 (+)
G64022 NA non-coding upstream 137953 14784909 ~ 14859165 (+)
G64001 NA non-coding upstream 265200 14668116 ~ 14731918 (+)
G63992 NA non-coding upstream 522719 14474026 ~ 14474399 (+)
G64067 NA non-coding downstream 4430 15005012 ~ 15035836 (+)
G64083 NA non-coding downstream 56549 15057131 ~ 15057391 (+)
G64086 NA non-coding downstream 71957 15072539 ~ 15072799 (+)
G64088 NA non-coding downstream 90389 15090971 ~ 15091193 (+)
G64091 NA non-coding downstream 122429 15123011 ~ 15123221 (+)
G64015 NA other upstream 252036 14744735 ~ 14745082 (+)
gata3 gata3,LOC107555822 other upstream 754884 14167229 ~ 14242234 (+)
LOC111192955 NA other upstream 1835751 13156226 ~ 13161367 (+)
G63432 NA other upstream 2528216 12468050 ~ 12468902 (+)
G63051 NA other upstream 5347031 9646579 ~ 9650087 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 1394744 16395326 ~ 16426623 (+)
G64289 NA other downstream 1438638 16439220 ~ 16442449 (+)
G64431 NA other downstream 1752461 16753043 ~ 16753560 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other downstream 1832708 16833290 ~ 16888195 (+)
G64449 NA other downstream 1872505 16873087 ~ 16875941 (+)

Expression


Co-expression Network