LOC103040205


Basic Information

Item Value
gene id LOC103040205
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17984965 ~ 18132010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671181.1
GCAGCGCTGGGAAAGAGCGGATCACCGTTTGGAGACTCGAGCCTGGACTGAGCGGCCCGAGCCGGCGCTCCAGCCCATAGCCAGCACTGCAGCACTCACTGCAGGACCTTCTGCAGGACCTACAGCAGGACTTACAGCAGGACTTACTGGATATAACCTCTCAAACACGCGCTTTAACATGGACTACATTCTTCACCtgaaattttttattttcttttaattacatttatttattgttatgcAAGGATTTAACATACCAAAAAGATGATTGGGGGCTGCAGCTCGTGCTGGAGATGCGAGGTTTTGTGTGGGGATTATAGCTGTGTGTGCTGAGCGGTTGGTCGGCCGGTTGTTTGGAGCTGTAGCGGGATGGAGGGGAGGGAGTTCGCCGCTCCGGCTCACCTGCTGTCAGAGCGGGGCGCCCTGGTGCACCGCGCCGCCTCGCGGATCTCCACCTCCGGACACGGATCCGTGCAGCACGCGGGGCCCTTTCCCCCCGGGAAATACTACCCCTCACCTCACCTGCCCATGCCCACACACTCAGGCAGCGGACTGATGGGTAATTCTTCAGCCTCCTTCATGGGGACGTTTCTGGCCAGCAGTCTGGGCTCCCCTCCCTCACACCCGCCTCACCCTTCCAGGCCACCGTCCTCCCCGTCTTCTCCTCCCTACCGCGGGGGTCCACACTCCAGCGCCTCCCAGATCTGGTTCCCACATTCACATGAAGCAGCCCCAGGGTACCCTCGCTTCTCAGGGAGTCTGGCCCACACATTCCTTCCCATAAGCCATTTGGATCATCATGCCAACAGTGGGGTCCTCTACGGGCAGCACCGCTTCTATGACACCCAAAAAGAGAATTTCTATCTAAGAAGCCTTCCATCCCAGCCTCCGCTCATCTCAGCAAATCACGGCATCCCACCCATGTCGAGGACGGGGCCCGGGCACCCCCAGGGCTCCTGCAGTAGAGACGCGGGAGGTGGGATGAACTTGCACAAGGGCCTCAAGGATGCCGGCATCGACCGAGGCGTAGTCTCGGGCACTAAGGACAACAAGGAAAGGCCGAGCAGCAAGCAGGAGGCTAAAGATCGGCATGCGCACAACCATCATCCGCAGCctcagcagcaacagcagcaccaCCACCCTCAACAACCTCAGCACCATGCCCAGCATCCAATTACGATGGAGGACGTGAACGGCAGGGCCTTAGAAAGACACAAAGCTTCCGTGCTTATGGAGTACAAGGACCATTCGCATTCGAGCATGAGTAAACCTCTCAGTGCTTGTCTGATGAACGGGAAGATGCAGAATGGAGATTCTGGAGGTGGGGTTGGGGTTGGGGTTGGGGCGGGAGCTGGATCTGGGTCAAAGGGACCCATGGTCAGCTGTGGCGCAGAGGGAATGGGTAGAAGCGCTGGAAGCTCTGCAAGCGTGCAACCCAGGCATATGGGCAACGGCAACACTGGACGATGCACTAAGGAAGCAGCAAGTGGGGAGATGAGAATCAGCGAACAACCTCCGTCAGACTGTCTGGAGAGGAGCCAGGCACTGCACCAGTCCTTGACCTACTCCGTGCCTCCTCCTTTACCTATGGGTTCGGCCGCTGGTGGTGGACATCCGCATCCGGGGGGCTTCCACTGTTTACAGCTCCACCCAAGCCATCCGCATCAtccacatcacacacatcatCACCACCCACATCATCACAGCCACCACTCGCACCATCACCCAGACTTCTTCTGTCCTCCTCCGCCTGCCCCCGTGGTCAACCCTTCCTTACATGATAAAGGAAGTGGTGTCCAAAGAGACCCCAAAGTGACCGGACCTACATTTGTGCCATCTGTGGGCCACTTGGGCGAGAAAGTTGGAGCTGGACCCTTCCAGCTGGGACACCCTGAGTGTCAGGGAAGTGGTTCCAAGGACAAGGCCATGGAGAAGGCAAGTGGGGGTGGTGGAGGTCATGCTGGGAACTGGCATCGGAAACAGCAGGagcaacagcaacagcagcaacagcaaccACCACCCCAGAAGCAACATCCctacagaaaagcagaaaaggCTCCAGACTGGATGCACAACAATCATCATCAtctgcagcaacagcagcaacagcaacaacaacagcagagcCATGCCCAGCAGCATCAGGCAGTGCGCTCCCGAAGTGCAGACTGCATCAACAGCATGGACTCTACAGACGTCTACAGACCTGCTCCGGTCCAGGAACCCAAAACCGGTCATCCGTTGACTCACCCCAATGGCGTCAACCCTCAGTCCTATAGAGACTGTTCACACACTGGACCTCCCCCCAACTCGTCACCTCTCGCTGGGAAGACCATGGCCCAGCAGGGGCCGGGTGGTGCGAGTTGCTCGATGCAACGCGATGGCCAGAAAGTAGCCCGCATTCGCCACCAGCAGCACGGCAGGGCAGGTTCGGACGCTTCCTCGACAGACCTGAACCAAGGCAATGGCAATCAAGAGATGAAGCGAAAGATGGAGATGTCTCCATATGGTTATGGTGGTAACAGTGGGCAACACCATTCACATCAGCAACCTCCTGTACCACCCTGGGTCATGCACCCTCATCATGTCTACCCAGAGGAGGACCAGCACAAGGCTTACATGGAATCTATCGGTGGTCCTGCCAATGGAAGGCAGCAGcctcaacagcagcagcaaccgCAGCACCAGTCAGCAGGAATGGGACCTCCGGGACCTCCGGGCCCTCCTCTACCAGCCCATCCTGCTCCTGCACAGACCCAGCAAGAGTCTCTGGGCCCTCAAGGGGAGGGTAGTGCCATGAAGAACCTTCTCAAATACAGCAACCAGCAGCAGCCTCTCCTCCTGTCCCAGAAGAGCCCTTTTGGAGGGTTGGGAAGTCTCAAAACGGCACACAACAACAACACGAACTGCACCTTGCAGGCAGGCAAACCCACCCTTCCGTCCAGGAAAGGCCCAACCAATGAGAGTGAGCGGCCTGACTGTGGTGGACGGAGCAGGGATATCGGGGAAGCACCTCATGTGGAGGGCGAAGTTCGGCAGCCTCCTGTCGGAATAGCGGTTGCGGTGGCACGACAGAGAGACCCGACCTGCCGCCCGCCAGACAACCACCCGAGCAGTCGCCAGGGACGAGTCCACTCAGCTATGAAAGGTGCTCCACGGTCCATGTATCCTCCAGAATCAcctggagaggaggagaggaagaggatgagTGGAGAGCACATCGGTCACCCATGTCTGGACAGAGAGCGAGACACATTTATCAGGGATAACAAGGAAAGGGTCGAATTCGCTCGGATCCATCCCTCCAACAGTTGCCATGGTGACCTCCCATCTCATATCATGGTGCCGGGTGGCAATTCTCTGCAGTCGGGCCAATTAGGGGACCCGGCAGCACACGCCCATTCCGCTCACCACCATTGGATGCCACGCACTGGAAGCCCCTCCCTCTGGATGACGGGCCATTCCTACGGCATCAGCCACACTGCCCTCCACCAGAATCTACCCCCAGGCTTCTCAGCAGCCATGCCTGCCCCCCTCCAGCCCGTACTGCCCCTGCCCCAGGACCCTTCTGCCCAGCTGGTGGTGCTGCCCAGTGAACCTGCCTCCCACCCGGCAACTCATCACTTAGATGTGATGGAGCAGCCCGGACTGTGGCCCCCGGTGTACAGGGCCCGAGGGCCTCCCTCCCACATGCAGCATCCCGCTGTGTACTCCCGCTCTCAGTTTCTACGGCAACAGGAGCTGTACGCTctccagcagcatcagcagctgcagcagcagcagcagcatcccgGCCATCAGCAACCACctcaaacaccacagcaacaccggGGAGCGCCGCACAGCGCCGAGCTGCAGCACAGAAACTCTCACAGCCAGATGCAGAAGAAGCCGGAGGAGCAGAGCATGGAGCTGGAGGACATCCTGTCCGAGCCCCGGACCCCCAAACCTGCCAAGTCTTACGCCTACGGCCCGGCGCCCCAGGCCTCGCCGCCCCCCCGGGCCTCCACCCTGCACCTGTCGCCCTGCTGCCAGTCGCCCTGCATGCACCCTCACCCTAAAAGCACCGCCTCCACCCCCTGTCCTGCTGCCAGtcctgctgccactgctgcccGATCTCCCGCCATCAGCCCGGCGCCGCCGCAGCTGCCCAAAGCAGCCGAGTCCCAGGACAAGAGGGCCGAGGGTCAGCCGCCGCAGGACTACCCTCAGACCATGGAGCCAGATCTCCCACCTGAATACACCTATCCCGCCATCACCATGGGATACAGAGGAGGGCCCTCCCCTCAGGACGTACGATTGGCTGAGCCGGCTGAGTTGGAAACCATTCCTGTGGAACCTGTGGAGCATGCCCCGCCCCCTCTCTCCAGCCTGGGGGAGGAGCTTGGGGAGTGCCATGCGATCGTAAGACCCATTACCGAATCCCAGCTGCCAATGGAGGAAAAGAGGGAGGAGGATCTGGCGGACGCAGGGCAGGGCACGGGCATGTTGGCGCCAACTGGGCAACCGGATCCGGTGGACGGCGTGAGCTGCTGTGTGCCCGCTGGAGACGAGGTTGAGgagggtgatgatgatgaagatgatgccATGCAAGTCCAGGATCAGGCCACGATGCTCCTCTGCCCGCCTGCTGAAGCCTCGATCTTCGAGGTGGCACCGTGTCCAATCGCTCCAATCGAGAAACAGGAAACTCAAAGGGACGAATGCATCATGTCCTCACAGGAGGACGTGACCGAGGTCCTTCCAGAGCAGGACAACGATCAAGGGGTTCCTGAGGTTCCCGAGGTGGACGCTCAGAACGTTCCAGATCCAGAATGTCCATGTGTTCCAGATCTTTCAGCTGAACTCCAGACTGAAGTGGTTCAACCACTTGAAGAAACAGCAACGGCGAAAGTTCGAGAAAAAGAAGATCAAGAAGACGACAAAGACGTCCAAATCCTGTCCTCTTGTCCCTCTCCTGTCCATGCCACCTCATGCCCACAGCCCCTCGTGCCAAGCTACTGGAGTCTAGAGCTTCTGATCGCTGCAGCTTTCTGTGGAGACTGTCCTCCACCTTCTCCACCACCTTCCACGCCTCCTCAGGACTGCAGCGCTCAGCTCCACCCCAGCACTCACGGCATGGAGCTCCTGAGCGAAGTCGCCGACCTGGAGCTCCAGCACCATCGCCACAGTGCTGCTAATAGTGAAGGAGAAGAGCAGTTAATTTTTGATCTCCAGAGTCTGGCTACGCTGGCAGCTGCCCGGGCACTGGAGTTTGGTGCCAAGGCGAACAGCCTGGCAGAATCTGAGAAGCAGAACCCGGGCAGGAGGATCCTCAACCTGCGCCGGAAATGCACCTGGACCCCTCGCCACGAGCCGGTGTGCCCGGTGAAGGGGTCTATGGAAGCGATGGACGGGCAGGAGCTGGCAATGCGGGTGAGGCTGGCGGAGCTGCAGAGACGGTATAAAGAGAAGCAGAAGGAACTCGCCAAGCTGCAGAGGAAGCATGACCACCAAAAAGAGGAAACTCCTCGTAGTCCTGCTCGCCGGGGTCCTGGACGACCCCGCAAACGCAAATCCACCCCAGGCCTGGGTCCGGCCGCCCCCCCAGAGACACAGAAGAAAGTCAAGCGTAGAGATAAGCCCTTCGTGTCCTCGTGTCGGCCGGCGCACAACCGCGGCGTGATTCGGCACGACAGTGACACCCAAACGCGTGGGCAGCTAGCCAGAGCCCCTCACCGCCGGCTAGGGGAGGGGGAGGGTGTGGACatgatgaAAATGCAGTGTTGTCAGAAGAGCAGTCTTCACGAGCATCACGTGGAACAGCTGAAGCCCAAAACCTCCACCAACAGGACGGGCATCCGACACCGAGACGCCTCAgcctgtagctccgccccctctcACCTGTACCTGCCCCAGAGGAGCCCGAAAGCAGAGTCCAGGCTTCCCAACGAGTCGGAGGGCCAGAGCGACACAGGCAGTGGGGACAGTGCGGTGCAGGACAGCTGGAAGGGACGAGGGGAAATGACCATCAGAAAAGGAAAGAGGAAAAGTGGGACGGTGTTAAACCGAGCGTCCACCCGCCTGCAGCCTCGGTCCAGGATACTCCGAGCCAGAGGACAGGAAGTGACAGAGGACGGAGACACATCAGCACTGGAGACAGAGTCCTCTGAACAAGaagaggaggaagacGAGGGCAGTGAAAACAGTGATGAAGGACAAACTGCTAAATCCCCCGCCTCCAGGGAGCTCCCATCCAGCTCTGCTGTCAAAGACCCCTCCCCTTCCTCCGTCGTTAAACTGGAAGCCAATCAGAAGGCAAAAAACAAGAGGGAGCGACAAGAACTTTACGGTTTGCAGCATCACTCTGGAACTGAAGGTGAGGTGAAGGTGAAGAAGAAGGCCCCCTGCAGGTCGGCCCCTGTAACCGCATCCAAGCCCCCAGGGGTACGCAGGAGACCGGGTCGACCCCGACTACAGGAGAAGCCCTGGACCGGTCACTACCACAAACCCCCCGGCCTCCTCTCCTTCACCACCACCAGCGAACGACTGAGGAGAGCCACTCGAAAGAGCTCCATACTACGAGGAACCGTGAGCAAGaggAAAAGTTGGTCAGGTGTGGCTCAGTCTTCCCAGAGTGACGATAATGACGGCAAAAGAAGAACCAGATTCAGACAGTCTAAAGGGCGGGCCGTCAGTCGTCTGCTGGAAAGCTTTGCAGCTGATGAAGGTTTCCGGCTGGGTGAAGACAGCAGCTTCTctgatgaggatgaggagggaAACTCTTCCTCACGCTCCAGAACTCCTCCAGCTCCTCCAAACTGTGTTCTGAGTAAAGATCAGCTGACGGATGGGCTCCGGGTTCTGATCTGTAAAGAGGACGAGCTGCTGTACGCCGCCCGAGTCAGAACTGTAGATGTGCCGGATATatacAGTATTGTTattgatggagagagaggaaacCGCCCCAGGATTTACTCCCTGGAGCAGCTCCTGCAGGAAGCGGTTTTGGAGGTGCGTCCTGAAACAGAGGCAGTTCTAACTGAAGGAACGCGAGTGTGCGCCTACTGGAGCGAGCGTTCACGATGCCTGTACCCGGGATACGTCCGGAGAGGTGGCGCTAGTGATGAGTGTAAGCCGGGTGGGGTGATGGTGGAGTTTGATGATGGAGATCGGGGACGCATCTCTCTGCACAACATCCGCTTCCTTCCTCCTGGATACCAGGTCCAGTGTGCTGAATCAAGCCCGACTCCAGACTCCACTAATCGCTCACTATCAGACAAGATGGGTTCAGCTCACGATGGAAAAAACTCACAGATCAATAAATCCTCTGAGAAAACTCCCAGCACTGAGGACGCCAAAGCCCTGGAGAAACCAGTGAGACGACCAGGGCGACCCAAAGGTTCAGGGCTGAAGAGGTTCATCTCAGACGGCGCTGCCAAGAACTCAACATCTCCACTTACTTGGCCATCGGTGGACGTGCCTCGAAAAAGGGCGCCTGTCAATCTGTTCCAGCTTAACGGCTCCGCCCCCAAGAAGGCCTTGAGGAACAGAGAGGCGGCCATGTTTCCCCATCCTCCGGTCTCCATGACGACCCCGGCCAAAGGCATCTTCAGCAGCAGCTCCTTCGAGGTGGACTCCTTCAGCAGCATCGCCAACGGCTACTCGTCCTTCTGCAGCCAGACCCTCCCTTCTACAGGGACGCCTCTAGGGGGCAGGAGCAGTCCGTACGGGGGCAGGAGACGCTCAGAGGACCCTGATGTTCCTCGCGGGAGAAAAAACGAATTCCTGATCAAGCTGGACCACGAGGGCGTGACGTCTCCGAAGAACAAGAGCAGCaaggctctgctgctgctgggagGTTCTGGGTTTGGTCCGAAAGGTTTAGGTAGTGCTCCACCCAGATCTGAAGCCTATTCCCACCCAGTCCTGCTGGTGAAGGACAGTAGAAAGGGTGATAGCTCGAGGGCAGAACTTCTTCCAATCCAGAGAAAGCCCTCCTCGTCGTCATCGTCTCTGCGGATGGGCGAATACGGAGATCTCGGGCTCAGTTGTCACAGGGACTGCCATAGCTCATACTCGGGCAtggatgaggaagaggaagaggaagaagaggatcGCAGGAGACGTGGAGGTGGAACGACGATGCTTCCCTCGGCTTCAGGCAGCATTAGGACAGCCGATCGCTTCCTTTCTCGACTTTCCGTCTCCTCGTCCTCCTCCGGATCATCCAGCTCTTCCAGTTCTGGTTCTCTTTCCAGCTCCAGCCTCTGCTCCTCAGACAACGACTCCTCCTACAGTTCTGAGGACGAGGAGAGCTCCAccctcctcctgcagagctgcCTAACCCCCCATCGCTCCATCCTTCAGCCCCCAAACCCCAAACCCCCCTCCGGACCTTCTCAGCACACATTCGTGGCCAAAGCTGTGGCCTTGCCCAATGCCAAAAGTGCAAATGCCAACCACAGCGCTGGCAGCAAGCCTCTAAAGAGGAAGGAGTGCACCAGTTCTCCATCCAAACCCTCCAAGGACCTGGTCAAGAGGCAGAAGATGCTGCCCGACCAGAGCAGACCCAAAGCGTCATCATCCTTCCTACCGGCAAGGCAACTGTGGAGATGGTCCGGGAGCCCCACCCAGAGACGTGGGCTGAAGGGAAAAGCTCGTAAGCTCTTCTATAAGGCGGTGGTGCGAGGCAGGGACATGGTGCGGGTGGGGGACTGCGCCGTCTTCCTGTCCACAGGCCGTCCTCAGCTTCCCTACGTCGGCCGAATCGAGAGTTTCTGGGAGTCCTGGAGCAGCAGCATGGTCGTCAAGGTCAAGTGGTTCTACCATCCTGAGGAAACCAAACTGGGCAAGAGTCACCGAGACGGCAAGCATGCCCTGTACCAGTCGTGCCATGAAGACGAGAACGATGTGCAGACAATCTCTCATAAGTGCCAGGTGGTGAGCCGGGAGGAATACGAGCGAGTGAGCAGGAACAGGAAGCCCGGCAGCTGCCTGCAGGACCTCTACTACCTGGCAGGAACCTACGACCCCACCAGCGGGCAGCTGCTGACTGCGGACAGGGTCTCCATTCACTGCTAGCCTGCTACGCTGGTTCCTGGATACTGCTAATGAGGCTACTGGTCATGTGGTCTGTCTTCTTGGTCAAGGTGTCCTTAAGCATTTGGCAGAAGACTATCCTGGAGCAAGATGGGGGACGTGGATCACCAAGGATCAAAGCTGGGATTATAATTCTGATTCAAAAAGGAGCTGGAGTATAGTGAGCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671181.1 True 9250 mRNA 0.58 31 17984965 18132010

Neighbor

gene id symbol gene type direction distance location
LOC111192979 NA coding upstream 55116 17924346 ~ 17929849 (+)
otop2 otop2 coding upstream 105693 17860217 ~ 17879272 (+)
amn NA coding upstream 179139 17804284 ~ 17805826 (+)
LOC111192968 NA coding upstream 204373 17768928 ~ 17780592 (+)
LOC111192970 LOC108437139 coding upstream 220844 17748628 ~ 17764121 (+)
LOC103030006 LOC108437142,LOC105936201,LOC103140951,LOC107083146,LOC103468841,LOC102223636,LOC105899306,LOC105012845 coding downstream 29062 18161072 ~ 18172237 (+)
LOC107197388 NA coding downstream 44217 18176227 ~ 18193170 (+)
LOC111192978 NA coding downstream 64745 18196755 ~ 18213076 (+)
LOC111192973 NA coding downstream 83682 18215692 ~ 18251351 (+)
LOC103027278 NA coding downstream 499402 18631412 ~ 18634243 (+)
G64710 NA non-coding upstream 169237 17769247 ~ 17815728 (+)
G64709 NA non-coding upstream 169316 17780682 ~ 17815649 (+)
G64595 NA non-coding upstream 306523 17677928 ~ 17678442 (+)
G64586 NA non-coding upstream 310804 17622861 ~ 17674161 (+)
G64579 NA non-coding upstream 362293 17565712 ~ 17622672 (+)
G64787 NA non-coding downstream 66986 18198996 ~ 18230483 (+)
G64792 NA non-coding downstream 134229 18266239 ~ 18329102 (+)
G64794 NA non-coding downstream 174895 18306905 ~ 18384819 (+)
G64797 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 non-coding downstream 202506 18334516 ~ 18355513 (+)
G64799 NA non-coding downstream 212942 18344952 ~ 18345563 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 265053 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1096770 16833290 ~ 16888195 (+)
G64449 NA other upstream 1109024 16873087 ~ 16875941 (+)
G64431 NA other upstream 1231405 16753043 ~ 16753560 (+)
G64289 NA other upstream 1542516 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 424118 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1091199 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1144792 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1148282 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1648653 19780663 ~ 19794325 (+)

Expression


Co-expression Network