LOC103034879 (usp36,LOC107717487)


Basic Information

Item Value
gene id LOC103034879
gene name usp36,LOC107717487
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18489652 ~ 18536743 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671182.1
TTCCGTTCATCATTGGAGGCCCCGCCCTCAGATAATGCAGCATGGGGGAGAGAGCGCAACAAAATGAAGGACTTCAGAGCCGCCGATTGTCTTTATAGTACCGCAGACTGAACGATTCCGGCTGCTCCGCGGATGGTGATGCACAATGCCCATCGTGGACAAGCTAAAGGAGGCCCTGAAGCCAGGGCGAAAAGACTCGGGCGATGAAGGCGACCTGAACAAGCTGCTGGCCTCCTCCGCCAAGAAGGTCCTGTTGCAGAAGATCGAGTTTGAGCCGGCCAGCAAAGGCTTCGGCTACCAGCTCGAGACTCTCAAGACCAAGTATGTGATCCTGAACCCCAAGAACGACGGGGTGTCGGCCCAGAGACCGACGGAGCCTGCTCCCATCAAAAGGCAGGTGTCGGAAGGCCTTAGCGGGGGGCAGGGCGATGGCATCCCTGCGCCGCAGAAGCTGCTCTTTCCAGGGAACAAGCTCTCCATGAAGTGGGAGCGGGTGTACCGGGTCGGAGCCGGCCTCCACAACCTGGGCAACACCTGCTTCCTCAACTCCACTGTGCAGTGTCTCACCTACACGCCGCCGCTGGCCAACTACCTGCTGTCCAAGGAGCATAGCCGTGCCTGTCACCAGTCAGGATTCTGTATGATCTGTATAATGCAGAACCACATCATCCAAGCCTTCGCCAACACGGGCAACGCCATCAAGCCTGTGTCCTTCATCCGAGACCTGAaaaAAATTGCTCGCCACTTCCGGTTTGGGAGTCAGGAGGACGCCCATGAATTTCTGCGCTACACCATCGACGCCATGCAGAAAGCCTGTCTTAATGGTTACCCAAAGCTGGACAGGCAGACGCAGGCGACCACGCTAGTACACCAGATCTTTGGGGGTTACCTGAGGTCACGAGTGAAGTGCTccatttgtaaaagtgtatcAGATACATATGACCCTTATCTGGACATAGCAGTGGAGATTAGGcaAGCGGCGAACATCGTCCGTGCCCTGGAGCTCTTCGTCAAACCCGACGTTTTGAGCGGGGAGAACGCCTACATGTGTGCCAAgtGTAAGAAGAAAGTGCCAGCAACAAAGCGGTTTACGGTTCATCGGACGTCGAATGTTCTCACGCTGTCCCTTAAACGCTTCGCCAACTTCAGCGGAGGAAAGATTACCAAGgacGTTGGTTACCCAGAGTTCCTGAACATTCGTCCATACATGTCTCAGAGCTCAGGAGACCCAGTGATGTACGGCCTTTATGCAGTcctggtgcattctgggtacaGCTGCCATGCTGGCCATTACTACTGCTATGTTAAGAAGCTGGACACGGCTCAGCTGAGGAAGATCCAGTCTGTGGACGGGGGTCTGGGCGTCCCCGTGTCTCGAAACGGTCTGAGCGTCCAGACGCCTAAACTCTCCAACGGGACGTCCTCAGCCCACGCCGTGCCCAGGCTCTCCGGCGGCCCCACGCTGATCGAGGAGCCCTTCAAGAAGCTGAAGAAACCCGCCCCCCAGCCCCGCGGCTCCGCCCCCAACTCCTCCTCCAACGGGATCAGCAAACCAGACCCCGACAAGAAGAGCGGCGGGGAGCAGAGTCGCAGTCTGGTGCTGTCTACCTCACTCAAATCCCTGTCCGACTCGTCTTCAGCCGACACCTCCTCCGAGtccaagGAATCGATCGGCACCAGAAGTGCTCCCGTGGGGAACATGTGCGCCCCCGCCAAGAGCAGCGCCAACGGGACCGCCTCTCCGGCTAAAAGTGTGGAGCGAGCAGCTCCGGATCAGGAGCAGAAATCAGCCAAGCTGAAACCGCCGGCCCTCACCAACATCACGTCCGAACACAACAGCACCATGTCTCCTCCTCCTGCCAAGAGACTGGCACTGTCCGCCAAGAAGGCCAGTCCCAGTCCCAGCCTCAGCCTCCGGACCccgaacaacaacaacaacagcagcaacagcagccgCAGCACTGAGgcatcatcctcctcccctcttcatcacaTCATCAGTCCTGTGTTCCCCTCGCATCCAGCGCAACTTCACCATCTTACCCCTGCTTCACCTCCTCAGCACCACAGGGTTTCATTCCATTCACCCAAGCTTCAGTCTCCACCCTCCACTCATctctttaaaaactccagccCCCATAAAGagccctcctcctcttcctccaagAGTCCAGCACTCTCCTCACCAATCAGCAAGCCCCAGCCCCACCCTTCCAGCCACCCTGGACCAATCAAGAGTCAGAAAACTGTGGAGTGCGGTGAAGATGTTGCTGATGGACTCTGCAGTCCCgtcttaaagaagaagaagaagaaaaagaagagacgTCACTCTGAAGTCGAAGCCCCCGTCACTGAGCTTCCAAACCAGGCCAAACCCCTGCAGAACGAGACGGAGCCGatcagagagaggaggaaagagaagaaacggaaaaagagtaaaaaggaGGCAGAGCAGAACGGCCTCGAGTCTCAGAGAGAGGCAGTGCAGTCTCACCTGGAGCCGCCGCCTCAGGATGAAGACTGGTGTTTAGGAGATACGTGGACGATTAGCAACGACGCTAAAGGAGCGACAGAAAGGCCAAATAAGCAACATCAGCAATCTGAAACTCCCACAGAGCCCAAACTCAAACTATCTCAACCCAAAACCCAACTGAGTCCGAGCCCGAGCCCGTTACCTTCACCTGGACCAGACCTGCAGGCCTCcgctttaaaaaagaagaagaagaaaaagaagaagaagctcagagaggagctgcaggagTCTGAGGGCAAACCTGACATTTATAATAGTGCTAATGGAGTGAGTGGGTCGATGCAGGTAAACGCAGAGCGAGAAGAATTGCGAGAGCCGAAGAAGAAAGCCaagaagaggaaaagagaagaagCCAAACTGAGAGAAGCTGAGGATCTCGCCCCAGAACCTTTTAGAGATGAACCGATTAATCAGATGGACCGTGTGGAGACAGAGGAGTGTAAACCTGCTGGAGAACCGGCCGCTGTGGTAGTCTGGGACAGTCAGGTTCAGGACGGCTTTAAGCGCAGCAGAGACTCTGCAGCATCAGAAGACGCTCCTGAGAAAAAGCCTCGTCCTGCTCCCATGGCCTGGGACGGCAAGAAAAGCTCCAGCGTGGTCGAGGAGCTCCTGAAGAACGCCAGAGATAAAGCATACGGAAATGAAGTTCTCAGTTGGGATGGAGAGCGCTCTGCTATCAGTAAAGATGCAATCGATGATGCACGTTGGGCCAAACATGACACTGTAATCGATGAGTGGGACGAAGAGTTTGACAGTGGAAAGGTAAAGAAAATTAAGTTTAAgaaggagaggagaagaagTGGAAACGTCTTCCAGAAGATCCAGGACCGTCGCAACATGTGGTCCGTCACCGCGAAAGGAAGGAGGAACAGTCTGGGCTATCATTAGTGAGACAAGGGCTCTGAGACGAGACGTGCTGGTGCTCCCCGGATCGGACGCTTGCTGATTGGACGCGGAACGGTGCGGTCTCTCCGAGAGAACGTCCTGAAGAAAGAAGAGGATCATCCGAAGAGTactgtgaaaaaataataataattatgattataattataatacagAAAGCGATCGAAGCTTTTGGGGCTTAATCTGGGGTTTGAGGTCTAATCCACTTTACTGTGGGTTTAGAAGATCAAACCACCGTAATAAAAGACCCACACTGGTCACACTGGTCCAGCTTCCAGCTTCCAGACGTCTGTGGTGAGATGCTGTACTGTAGCTTCTGCTGTCTGCTGGTCTGATCTTGTCGGGATTCAGGATGAGACACGAATTTAAGGTGAAAAACGATGCTGATGAACTGATAACCATCCCTCCCTCCAGGGTGATGAGTAACGGtgctgttattaatattatcggGCGTACTGCGAATCACTTGGGCACAGACCACTGATGCACACTGCCTCCCGGTTTACTGACGAAGAATCAAAACTCACGAACCATctcagaattattatttttgctattatttttgttatagttattttattatcattattttctgttattAGTTAAGTGTTTTAGTTCTTTGAATGAAGCACAACACTCGAATGTTGAAGgtttagatacagtatataaaaaatatggcCTGAAACTGAGTCACGGAGTCAAATGAATCGACTGAATCAATTGAATCATTCTCTCTGATTCAGATGAACTAATCCAAATACTCAAATCATTACAGTGAATACCAAATACTTGAGGACGCCGAATACACTCGCACCATttttacagctttatacagaGTGAGTGCTTCAGTAAACGATGTGAATGAATGTtgtgcatgttttttattttattttattatattatcaacaatgattcatttcattttttgggGGTTCTGAACCAAAAAGACCCAATGGACGATTCATGAGTGAAATATAACAAGCCTTGCTTGGTGCATTGACCTCTTTTTCTTTAAATCTTCCGTTATGTTGTGGATTtgccttatttttttctttttcttttcatttttcttgagTTGAACataaatattctgcattttatttttattttgttctgaaTATTCTGAATATTATGGGAATCTTCTTGACGAGATGGCTCTAgttgaaaatgtcaaaaatattaaaatttttgaTATGTGTTCATTCACATATGAAGGTCATATGAAGCATATCAAAAGGTTACTACAATCTTTATAAAACAGTTGCCTTTAACAATTGGATCTGCCCAATTTATCAATGCACcaatgtagtaataataattctaTTATGTCCATCAGTGACGTAAGGGAGAAAATATTGCATGGATAGCttgcttttttaaaagcatttatctgtttgtttcaCTGTAAGAAAGGCTGTACTCAATCAGTGCTGCTTCTACttttgcatcagcagccggagtcagagagagagagagagagagagaatacaggaAGTCATAAGTCATGTTGTTGGTTGGCTCTCTCTTCTCGTCACTCCTATACATAGTGATGTTGTTTGTTGGaacaggcgtctgttagctgaatGTATCAGAGCTGAGGATGCGACGCTTTCCTCTGATCTGAGCTGCagtgattggctgctgtttgGAAAGGGGCGGAGTCTGCTGGATTTCTTCACATGTATCGTGAGCATCGAAGGTATTCAGAGTTTACCTGGGTTTAACTGGGTAGCAGACAAAATTAAAGCCgaacaaagtaaaataaataacataaataaatatatatcatattttattgcatatcAGCAACATTTTCCAGCCAATCCCATTGCCGCTATCGCGCTTTCTCGCTCTCTACTCTCTATGCAAGTCGCACAGGTCACCTGAAGCCGGGGTTCACCTCAGGAACCGGTCCTAAGAGAATGTCAGGAACGCCGGGAACGCCGCTCTCTTGCGTCCCCTTCATCGAACCTACTGTAGAAACCGAGCCACAGTTCCACTCAATTCCACACAGTTCCACACAGTTCCACACAGTTCCAGTCCTTCACCTTTTCATAATCCATCACCAATCATATATATGAATCATAATTCATAGCGCAGAGATCTCTATTAGACGTCTCTGGAGTTGTACTATAAACGCTTTGGGACTAAaatctacattaaaaaaatatataaaaatattgattttattccagataCTTGGATCCACAGACGTTCACAGCGTTTGAGTCCGTAATTGAGTTATGGAGAATAAGATGTGATGCTTTATTGATTAGAACATTGTACAGTCCCACTcgtgctctctctgtgtgaccTCCCGAACATCCTCGTAGTTGAGAATCCTCCCCGAACCCCAACCCAAAACCCCAATTCTTCCATTTTAGAGAAGTTGCCttgaactgataaaaaaaagagtaataaaaataataataataacaactagATCTTAAAAGTTGAagtttatagtttaaaaaaacgagacgcgtattaaaatgcacatataattCACAAATTAACGAAAcctaatatatatgtttaacagGTTTTTGAACTGTAACTGGGAGCTCCTCAGTGGGTAGATGTCCGGGGGGGCGTGTCCGAGAGGACGAATCGTACGTCGCTCTCCTCTCGGACCCGCCCCCTCTCTTTAATGGCAGTAAATTACACTTAAATCCAGGATGAAGATCCACAAATAAAAAGCTGAGTTCTGTAGAATGTGTTGGTGTTCTGTTAGAAACGTCACTCGAGGTCTCTTCAGTGGAAGCGACGCTGAAGAACACGCTCTGATCTCGACGTCTGATTCATGTCATCATATTTGCACCGCCGATTCTGTACCTTTATGCCGCCTTTTCGAGACTAAGAAGAGACATTCGATATCGAGGAAACgtgaatataaatatactggTGCAATAAAGTTGTGATTTTTGTGAAA

Function

symbol description
usp36 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP36 (ubiquitin specific peptidase 36).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 36 isoform X3

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671182.1 True 6368 mRNA 0.48 21 18489652 18536743

Neighbor

gene id symbol gene type direction distance location
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding downstream 133157 18353333 ~ 18356495 (-)
hid1 hid1,LOC107710705,LOC107698779 coding downstream 568841 17884620 ~ 17920811 (-)
ush1g ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596 coding downstream 634490 17840179 ~ 17855162 (-)
LOC111192966 NA coding downstream 672570 17807074 ~ 17817082 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding downstream 691843 17782752 ~ 17797809 (-)
LOC103028836 NA coding upstream 2160 18538903 ~ 18550973 (-)
LOC103028209 NA coding upstream 30934 18567677 ~ 18575169 (-)
tspan10 NA coding upstream 49826 18586569 ~ 18590070 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding upstream 180759 18717502 ~ 18718630 (-)
LOC103035518 nptx1l,LOC108435874 coding upstream 574390 19111133 ~ 19121460 (-)
G64959 NA non-coding downstream 43885 18444626 ~ 18445767 (-)
G64948 NA non-coding downstream 161192 18327721 ~ 18328460 (-)
G64936 NA non-coding downstream 259169 18199063 ~ 18230483 (-)
G64938 NA non-coding downstream 267460 18203144 ~ 18222192 (-)
G64926 NA non-coding downstream 315662 18172532 ~ 18173990 (-)
G65067 NA non-coding upstream 23385 18560128 ~ 18560548 (-)
G65069 NA non-coding upstream 44865 18581608 ~ 18582016 (-)
G65066 NA non-coding upstream 82968 18619711 ~ 18623603 (-)
G65064 NA non-coding upstream 168397 18705140 ~ 18709436 (-)
G65096 NA non-coding upstream 174837 18711580 ~ 18753784 (-)
G64886 NA other downstream 558482 17928507 ~ 17931170 (-)
LOC103043390 NA other downstream 800340 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 825091 17535296 ~ 17664561 (-)
G64492 NA other downstream 1601749 16882335 ~ 16887903 (-)
G64387 NA other downstream 1904005 16585065 ~ 16585647 (-)
LOC111192976 NA other upstream 88132 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 101564 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 361442 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 743559 19280302 ~ 19284032 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other upstream 769244 19305987 ~ 19370708 (-)

Expression


Co-expression Network