LOC111192912


Basic Information

Item Value
gene id LOC111192912
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19177002 ~ 19178587 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671183.1
atggtcaccctcaatCTTCGTGCTCCGTCTCCTGCTCAACGCTCTGAGAAACTTTCTGTTCTTACTGTAATAAAACCAGTCAGACCTCAGCAGAGCATCTCTACCCCacacagaacctcactttaccaTCTACACCCAACTCCCAACACCCAATACCCATCTACACCTCCTCCCAACACCCATCACCCATCACCCAACTCCCAACACCCAACACCCAATCCCATCACCCATCACCGAACACCCATCACCCATCACCCAACACCCATCACCCATCACCCATCACCCAACACCCAATCCCATCACCCAATCACCCCAACTCCATCACCCAACTCCAACACCCAACTCCCATCACCCAACACCCAACTCCCAACACCAACTCCATCACCCAACTCCCAACACCCAACACCCAACTCCCATCACCCATCACCCAACTCCCAACACCCATCACCATCACCCATCATCCAACACCCAACACCCAACTCCCATCACCCATCACCCAACACCCAACACCCAACACCCATCACCCATCATCCAACACCCATCACCCAACACCCAACTCCCATCACCCATCACCCAACACCCAACACCCAACACCCAACTCCCATCACCCATCACCCAACACCCATCACCCATCACCCAACACCCATCACCCATCATCCAACACCCATCACCCAACACCCAACTCCCATCACCCAACTCCCATCACCCAACTCCCATCACCCAACTCCATCACCCAACTCCCAACACCCAACTCCCAATCACCCAACTCCCAACACCCAACTCCCATCACCCAACACCCATCACCCAACACCCATCACCCAACTCCCATCACCCAACACCCATCACCCAACACCCAACTCCCATCACCCATCACCCAACTCCCAACACCCATCACCCATCATCCAACTCCCAACACCCAACACCCAACACCCAACTCCCATCACCCAACACCCATCACCCAACACCCATCACCCATCACCCAACTCCCAACACCCAACACCCAACTCCCATCACCCATCACCCAACACCCATCACCCATCACCCAACACCCATCACCCATCATCCAACACCATCACCCAACACCCAACTCCCATCACCCATCACCCAACACCCAACTCCCAACTCCCATCACCCAACACCCATCACCCAACACCCATCACCCAACTCCCATCACCCATCACCCATCCCTCAGCCCTGCACCGAGACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671183.1 True 1209 mRNA 0.55 2 19177002 19178587

Neighbor

gene id symbol gene type direction distance location
LOC111192965 LOC108435873 coding upstream 157734 18990517 ~ 19019268 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding upstream 470456 18687257 ~ 18706546 (+)
LOC107197347 NA coding upstream 493886 18669432 ~ 18683116 (+)
LOC111192972 NA coding upstream 507568 18657276 ~ 18669434 (+)
LOC111192977 NA coding upstream 522313 18652128 ~ 18654689 (+)
LOC103043906 LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444 coding downstream 89835 19268422 ~ 19271847 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 108248 19286835 ~ 19305457 (+)
cd36 NA coding downstream 189927 19368514 ~ 19399220 (+)
LOC103040257 kdm7a coding downstream 391399 19569986 ~ 19598049 (+)
kmt2e kmt2e coding downstream 437023 19615610 ~ 19660520 (+)
G65144 NA non-coding upstream 14084 19162569 ~ 19162918 (+)
G65122 NA non-coding upstream 144251 18945326 ~ 19032751 (+)
G65116 NA non-coding upstream 268316 18901452 ~ 18908686 (+)
G65044 NA non-coding upstream 336438 18792182 ~ 18840564 (+)
G65053 NA non-coding upstream 342148 18833959 ~ 18834854 (+)
G65145 NA non-coding downstream 68944 19247531 ~ 19252415 (+)
LOC111192982 NA non-coding downstream 71639 19250226 ~ 19252449 (+)
G65150 NA non-coding downstream 74896 19253483 ~ 19257583 (+)
G65178 NA non-coding downstream 415324 19593911 ~ 19594223 (+)
G65176 ndufb2,LOC107755897,LOC107694192 non-coding downstream 422301 19600888 ~ 19601638 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 553503 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 1457090 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 2288807 16833290 ~ 16888195 (+)
G64449 NA other upstream 2301061 16873087 ~ 16875941 (+)
G64431 NA other upstream 2423442 16753043 ~ 16753560 (+)
LOC103045528 NA other downstream 44622 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 98215 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 101705 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 602076 19780663 ~ 19794325 (+)
G65565 NA other downstream 1778548 20957135 ~ 20957635 (+)

Expression


Co-expression Network