LOC103044186


Basic Information

Item Value
gene id LOC103044186
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21374232 ~ 21386459 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671185.1
ATGAAGCTGACCCAGACTCTTAGTGTGGTGTACTGTATGATCAGAGTTGTTTGGATGGATTTCTCCATCACTCTTCCAGAGACTGCAGAAGCTGTGAGTGGACACTGTGTCCTCATTCCCTGTCAGTTTAAGATCGGATCAGACTATACtcacttattaaaaaacacttctgTAGGAAAATGGCTTAAAAACGGCACTGAGCTTAAGAACATAGTCTTTGACTCCTCAACTCCTGATAATAACCAGATTAAAGGAAAAATAACAGGAGATCTCAGTGAGAAGAACTGCACCACCATCTTCACCAGCATCAGTCCAGAATCCAGTGGGAAATATTACTTCAGAATCGAGGGAGAAGGAAAGCTGAAATGGTCTTATAAAGAGCCACATGTTTCGATAAGTGTCAGCGACTCTCCCCCTAAACCCACTCTGAGTCTGAACGTGGATCAGAAGGAGGTGAAGAATCTGGAGAATGTGATGGAGGGCAGCTCTGTGAATCTGATTTGCTCTGCTTTAGATCCGTGTTCCTCCAACCCCCCCAATTTAACATGGACCAACGTGCCCTCCATCATCAGTGTCCAGGAGATCCAGAACACCACCTTCATCTCCTCTCACCTGAGCTTCACTGCATCTCACCTTCATGATGGAGATCAAATCACCTGCACTGCCTCCTACCAGCTGGAGGACAAATCCATCAAAAGCGTTTCAAGCTCTCGTCTGTTGCTCGTTCTGTATCCTCCGAGAGACACGTCTGTATCAGTGGTACCTCCTGGTCCAGTTCTGTTGGGGAGTTCTGTGTCTCTGGTCTGCAGCAGTGATGGAAACCCAGCAGTGCTGAACTTCATCTGGTACAGAGAGAATGGAGAGCAGATAGGGACTGGAGACACTCTCAACATCACAGAGACTAACGATACACACAGTGGTTTATACTACTGTAGAGCTCAGAACCCACACGGAACCCACAACTCATCTGTGCAGCTGGACCTTCAGTATCCTCCGAGAAACACGTCTGTATCAGTGGTACCTCCTGGTCCAGTTCTGTTGGGGAGTTCTGTGTCTCTGGTCTGCAGCAGTGATGGAAACCCAGCAGTGCTGAACTTCATCTGGCACAGAGAGAATGGAGAGCAGATAGGGACTGGAGACACTCTCAACATCATAGAGACTAACGATACACACAGTGGTTTATACTACTGTAGAGCTCAGAACCCACACGGAACCCACAACTCATCTGTGCAGCTGGATGTTCAGTGTGACAGTGATGGAAACCCAGCAGTGCTGAACTTCATCTGGTACAGAGAGAATGGAGAGCAGATAGGGACTGGAGACACTCTCAACATCACAGAGACTAACGATACACACAGTGGTTTATACTACTGTAGAGCTCAGAACCCACACGGAACCCACAACTCATCTGTGCAGCTGGACCTTCAGTGTGACAGTGATGGAAACCCAGCAGTGCTGAACTTCACCTGGTACAGAGAGAATGGAGAGCAGATAGGGACTGGAGACACTCTCACCATCACAGAGACTAACGATACACACAGTGGTTTATACTACTGTAGAGCTCAGAACCCACACGGAACCCACAACTCATCTGTGCAGCTGGACCTTCAGTATCCTCCGAGAAACACATCTGTATCAGTGGTACCTCCTGGTCCAGTTCTGTTGGGGAGTTCTGTGTCTCTGGTCTGCAGCAGTGATGGAAACCCAGCAGTGCTGAACTTCACCTGGTACAGAGAGAATGGAGAGCAGATAGGGACTGGAGACACTCTCAACATCACAGAGACTAACAATACACACAGTGGTTTATACTACTGTAGAGCTCAGAACCCACACGGAACCCACAACTCATCTGTGCAGCTGGATGTTCACTATCCTCCGAGGAACACGTCTGTATCAGTGGTACCTGGTCCAGTTCTGTTGGGGAATTCTGTGTCTCTGATCTGCAGCAGTGATGGAAACCCAGCAGTGCTGAACTTCACCTGGTACAGAGAGAATAGAGAGCAGATAGGGACTGGAGACACTCTCAACATCACAGAGACTAACGATACACACAGTGGTTTATACTACTGTAGAGCACAGAACCAACACGGAACCTACAACTCATCTGTGCAGCTGGATGTTCACTtctctcctcaggcctctctctcctcccactGTAACAGCAGTGATGGTGGGATCCTGTGTGTCTGTGAGGTTTATGGATTTCCTGTTCCTAAACTGGAGTGGCGTCTGTCTGGACGTTCTGTTTCATCCTCAGTGAATCGATCCATCAGGGAGGAGCATATAGGCAGTACGGGCCTGAGGAGCCTCATCACCATTGTTCCATTGACAGACATGCCCACCCTGCAGTGTATCGGCTCCAATAATTTGGGCAGCACCAATCAGCAGTTCAGTTTATATTCCCGCTCTCCTCCAGTTTTATGccttttccttattttattcgtagttttttttcacatgtCCTCTGTGCTGTTTGGAGCTGCTGTTGGAGCGTCTGCAGTGATGTTGCTGTGCATCATATATGTGTGTGGAAGGCGAAAGCATCACAAACCTTCACAAGAAGAAAATGCAGGACTCGTTCTAAATGATAGGGCTGTTTATCAAGATGAAGAGGAAGAGTCTCTGTACACCAACAAATCATCCAAACGAGCGCCCAATCCCAGAGACCCGGACATTCTGCACTACTCCACCATCTCCTTCCCCGGTGAGGACGGGTCCGGAGAGATCCGGGGTCTGTCCTCACTAACGTCCGAATATTCCACTGTGAAGCACAGCCATGGAGAACAGGGGGAGGAAGAGATTACAGTAACAGAGATGGAACCGCCCTCAGCAGAGGAGGTAATCTACGGAAACATTGTCCGCCACTCCCATTCTGACGTGGACGCCGATGTGAAATTAGAACAACCTGAGACGAGAAAAACAGAACCAGAGAGGTCCACACACTCAGCGGAAGAGGAAGGTCTTTACGCAGTGGTTAAACATaaagaacacaaagaaaaagcatgacaaaataaaaatacaaaaattgcctcaatattaaatattttttaatgtgggTGAAAAATGGGAGAGAGTGGGGTACCACCTAAtcagattattttaaataactagatttgaa

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671185.1 True 3118 mRNA 0.47 13 21374232 21386459

Neighbor

gene id symbol gene type direction distance location
nav3 nav3 coding downstream 17724 20983152 ~ 21356508 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding downstream 563521 20522855 ~ 20810711 (-)
myf6 myf6 coding downstream 1168577 20202098 ~ 20205655 (-)
myf5 myf5,LOC107734855 coding downstream 1184531 20183094 ~ 20189701 (-)
acss3 acss3,LOC107755903,LOC107749070 coding downstream 1309442 20053951 ~ 20064790 (-)
mrps10 NA coding upstream 422826 21809285 ~ 21818148 (-)
LOC103040407 NA coding upstream 437437 21823896 ~ 21877702 (-)
LOC103040999 LOC103040999 coding upstream 579518 21965977 ~ 21970642 (-)
LOC111192879 NA coding upstream 602796 21989255 ~ 21990070 (-)
cog5 cog5,LOC107583928,LOC107656447,LOC107658957 coding upstream 862428 22248887 ~ 22273098 (-)
G65677 NA non-coding downstream 2110 21371062 ~ 21372122 (-)
G65625 NA non-coding downstream 16514 21357213 ~ 21357718 (-)
G65624 NA non-coding downstream 25119 21348739 ~ 21349113 (-)
G65615 NA non-coding downstream 148635 21224645 ~ 21225597 (-)
G65602 NA non-coding downstream 222373 21148719 ~ 21151859 (-)
G65684 NA non-coding upstream 23792 21410251 ~ 21410643 (-)
G65687 NA non-coding upstream 45353 21431812 ~ 21435689 (-)
G65686 NA non-coding upstream 49375 21435834 ~ 21439416 (-)
G65713 NA non-coding upstream 148943 21535402 ~ 21558591 (-)
G65717 NA non-coding upstream 154539 21540998 ~ 21544459 (-)
llph llph other downstream 1574630 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 1768507 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 2003524 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 2090200 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 2350574 18898185 ~ 19023658 (-)
ost4 NA other upstream 158959 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 243499 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 904226 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 1666814 23053273 ~ 23160179 (-)
G66619 NA other upstream 3121375 24507834 ~ 24508281 (-)

Expression


Co-expression Network