LOC111192919


Basic Information

Item Value
gene id LOC111192919
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 559026 ~ 565310 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671198.1
ATTTTGAAAGGAAACTTGACAGCACGATAGTCCGTCGGCAGGCAGTGTCTGTGGCTGTTTTTTCACACTTCACAGTATTTTAACGTCTTAATTCTAACGAGGTTATATGTTTTCTCACACTATGATATTTATCCTGCTGTGTGTGTACTGTTTTGCTCTTCAGACGACAGGTGCTGAGAAACACACGCTGCAGTATTTGTACACACTGCGTTCAGCACCTGAGAATGAGCCAGAGTTTGAGATAACGACAGTGTTTGATGGTCTCATCATCTCTCACTGTAAGAGCTCTAGTTTTAGAGATCAGTCCAGAGAGGACTGGATCAGTCAGACCTTCACTGCTGAAGAGTGGAATAACAGGGATCTGTTCTGTAAGAATGAATATTATTTCCATAAGACTCTGCAGAAGAAGACTGAATACTTGATCAACACAACAAAAGGAatcatccagagagagagaagctgtaCTGAAGATGATTCAGTTGTCTATATGAGTGATAGGTGGGGGATCAATGGTGAAGATTTTCTAACTTTGGATCCAAAAACTCTGAAGTGGAGTTCTGACTCTCCACTGGCGACACCAGTACAATCAGACTGGAACCAGATGAAGTTCATGACTCCATCACTGAAGGACTTTGAGCTGAACCAGTGTAAACCATCTCTGATGAAGCTGAAGAAAGCAAAAGTGGACTATCTGAAACAAAACCCACCTCCTGAAGTTTATATTTTTGGCAAGCCTTCTCATGACAGAAGCACAGTATCTCTGCAATGTTACATCAATCATAAGTATTTGCTGGGAGTTCATGTTCAGCTGACTCTGAATGGAATGGTGCTGAATGAAAGTGTTCACATCTCCAGTCCAGCTCCAAATATGGACGGATCAGTTCAGATTAGACTTGAAATGGATACCAGCATCAAAGAGCCTGACCGCTATCATTGTGTGATGGACACAGATAATCTGCATATTACTAAAGGATGGGATGGCCggacattaaaacaaaagtatCTTTACCCAAAGTCTGATGAGTCTGAACTGCGAGACGTTTCCAAAGTgtggtttgttttgttcttgCTGGGCGTCGTTGTCGGACTTACATTCAGTGGTATTCTGGTGGTAAAATATACTTCCTTTAAGTATAAAAAAGattacaaCAAAAAGAGGAACAAAATTGATGATGTgacattttacttaaaatacGTTCAAAGTGAGGAAGAGTGGAAAAGACAAGCTGAAGTTGATGATGAGTTCTATCCTAGATGGCCTCTGAAATCCTTAGGACAACAGTCAACATAAATATGTCTTACTGTAAATACCACACTAACATGTTCATGTCTCTTGCTCCTACATTTACTTGGCCATGTCTGAGACTATACCATTCCTTTAAGTAATAATGCAGATGGACATAAAAACCTCATTAAAATGTCAAaatctgtgtaaaaatgtaatgcagTGTAATATTGTTTCAACAGGAATAGCTTCTACCTCTATAAATAATGTTTAGTTTATGCTGTTAAACCTGAATTTGTCAggcatttcatgtttttcaaaaatagaaccaaaacatttttgttgtattactATTACCAGCTGCAAAAGAAATAGACTTTTATTTAGTGCCTTTTGTGTGTGCTACTTGAATGTGTATGTGAATAAAaggttttttacatgttttgcgTACAAATTAAACTTTTCTATAATAATATG

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671198.1 True 1702 mRNA 0.38 6 559026 565310

Neighbor

gene id symbol gene type direction distance location
LOC103031583 NA coding upstream 364182 192192 ~ 194844 (+)
braf braf,LOC107725591 coding upstream 380016 148669 ~ 179010 (+)
LOC103022716 NA coding downstream 4911 570221 ~ 574501 (+)
LOC107197032 NA coding downstream 21383 586693 ~ 590105 (+)
LOC103021355 LOC103021355,LOC108426405,LOC108279735,LOC107757248,LOC107694301,LOC100694258,LOC107590616 coding downstream 48803 614113 ~ 621742 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding downstream 184571 749881 ~ 780797 (+)
LOC111192892 NA coding downstream 243924 809234 ~ 809997 (+)
G60910 NA non-coding upstream 88337 455836 ~ 470689 (+)
G60903 NA non-coding upstream 281704 277010 ~ 277322 (+)
G60983 NA non-coding downstream 51464 616774 ~ 623435 (+)
G60996 NA non-coding downstream 175381 740691 ~ 740898 (+)
G61011 NA non-coding downstream 235339 800649 ~ 800870 (+)
G61016 NA non-coding downstream 268677 833987 ~ 835273 (+)
G61023 NA non-coding downstream 276285 841595 ~ 949084 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 446 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 412252 144189 ~ 146774 (+)
LOC103045537 NA other downstream 34349 599659 ~ 625009 (+)
G61014 NA other downstream 241255 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other downstream 288216 853526 ~ 1043316 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 880325 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 1149507 1714817 ~ 1808930 (+)

Expression


Co-expression Network