mkrn1 (mkrn1,LOC107725576)


Basic Information

Item Value
gene id mkrn1
gene name mkrn1,LOC107725576
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1984873 ~ 2001629 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671215.1
TCTTGTTGCCGAGGAGCCTCCGCTCCAGCGCGCGGCTCGCCGGAACATCCGGCTGCTGGGCTTCAACATAAACAGCAATGGCGGAGGCAGCGGCGGCACCTACAGCGGCTCCAACAACGGCGGGAGGCTGGACGAAGCACGTAACTTGCAGGTATTTCATGCATGGTCTTTGCAAAGAGGGGGACAACTGTCGATACTCTCATGATCAAAGCAGCAGCAAGCCAGCCATGATCTGCAAATTCTTTCAGAAAGGTTGCTGTGCGTTTGGTGATCGTTGCAGGTATGAACACACCAAACCAGCCAAGCAAGAGGAACTCCCTGGCTCCATGCCTTCTGCGCCGCTTCCCGCTGCCCTCCTTGCCGTTGCTGGTGCCCCTGACTCCGTGCCCAGTGGGCCAGGTGGCACAAGCGATGCCCAGGAAAGGCCCCACAGCTCCGGGGCAGTGGACTGGGTCAATGCCGCCGAGTTTGTGCCTGGCCAGCCCTACTGTGGGAGGGCAGACACTCTTGCGGAGGGTCCTGGACCTCTCATCGAGGACGAATATGAGAAGGAACAAGCCGACAAGGAGCTGAAGAAGCAGCTGTGCCCGTATGCCGCCGTGGGCGAGTGCCGCTATGGTCTCAACTGTGCCTATCTCCATGGCGATGCGTGTGATATGTGTGGCCTGCAGGTGCTCCATCCGTCCGACACTGCTCAGCGCTCTCAGCACATCAGGGCATGCATTGAGGCTCATGAGAAAGACATGGAGATTTCATTCGCCATCCAGCGCAGTAAGGACATGATGTGCGGCGTGTGCATGGAGGTGGTGTTCGAGAAGGCCAACCCCAGCGAGCGCCGGTTTGGCATCCTGTCAAACTGCAGCCACTGCTACTGCCTCAAGTGCATCCGCAAGTGGAGGAGTGCCAAGCAGTTTGAGAGCAAGATCATTAAGTCCTGCCCAGAGTGTCGCATTACGTCCAATTTTGTCATCCCAAGTGAATACTGGGTGGAAGACAAAGAGGAAAAGCAGAATCTCATCCAGAAATACAAGGATGGCATGGGGACTAAACCATGCCGGTATTTTGATGAGGGCCGTGGAACATGTCCGTTTGGAGCCAACTGCTTCTACAAGCATGCTTTCCCTGACGGACACCTGGAGGAGGCTCAGcctcagaaccagaaccagtcTCAACGGCGGCAAAACGGCTCCAATGGGAGGAACAGGAACTCGAGGCGCACGCCGCTGTGGGACATGTTCGACGAGCGGGAGAGCAGCGACTCCTTGGATAACGACGACGAGGAGATGGTGACGTTCGAGCTGAGCGAGATGCTTCTCATGCTCCTGGCCGCGGGGACCGACGACGACGTCACCGACTCTGAAGACGAGTGGGACTTGTTTCACGAAGAGTTGGACGATTACTACGAGCTCTACCTATAGCAGCCCTATTTTACTGCTTCTTTTCCTGTCCCCCCCTCACTAATCTTCCATGCACCTATCAATTACGCCCCTCCCCTCTTCCCCTTAATAGAAACTAGACTGGACTGTCTCGTGTGAGTGATGGGCAGTAGCGTCTTTTTCCCCCCCATGTGTTGTGGCAGTGCCTTTCAGCAGGccattaaaatgataagttcAGTTCAAAgtgaaatgaaatatatatacatatatgataaAAGAccagacaaaagaaaaaaggagaaaaaagcaaccgaaaaaaaaaaaagaaacaggtcTGTGCGCTTGTGCTAAAACCTTTTCTAGAAAACCTCCTCTGTTCTGTGAGTCTGTCTGTGTTCACTTTATGTActgataaaaaatacaaaacaatttaaaaatgacaaagacACTaagttatacatttaaaaaattggaTTATCGCTAATAAATCCTAATggttttattctgaattatagGTTTGACTTATCATCTACCCAGGTATATGGTCCCACTTAAGCGGGACTCTGAGCATACAGCAGCTTTGTAAGACTTCACTGTAACTGGTGGTGGCTGTAATGCTTTCTGGATTATTCCTCTATTCATGCACTGACTTTGATAGGGTGGGTGGCAGAGGTGAGCTTCCTTGATGTCAAATGCACACATGCACTCTTAACGTTCATAAAGACAATTCATGTCACTgaacatttaatgttttgtttctctgtatctatttctctctctctttctttctctctaattGGCCTGGAGGTCAGTTTTTAATGTACCTGAACCGTACAGGTTCAGCAGCACCTGTGGTATCAAATGGCAAGTCTCTCCTAAGAACTGCGTGTAGCGATACCTTTGTGAAATTGGACTCCCGAAAGCAGACTTAAATGCATACGATTACGAAGCTCAGTGGTTCATCACTTTAACTGTCTATTCAATTGTAGATTTCTGTTTTGCTTCAGTATTGCAATTTAAGCTCGGCTGTCAGTAGCCAATCCACAAAAACCCAGTTGTTTATTCGGTTCTTGTCGAACTTGGTTGAATTGCATATGTTTATACTGAAATGTGCTTGTTTTCTATGGTCCAGAACCATCCAACATAACTTGAAAATTAAAGTTTATTATCAAAGTATCATAGTTTATCTTTTACATTTGTCCTCacgaaataaaaacattttcataataCAGTAA
>XM_022671216.1
CTCTTGTTGCCGAGGAGCCTCCGCTCCAGCGCGCGGCTCGCCGGAACATCCGGCTGCTGGGCTTCAACATAAACAGCAATGGCGGAGGCAGCGGCGGCACCTACAGCGGCTCCAACAACGGCGGGAGGCTGGACGAAGCACGTAACTTGCAGGTATTTCATGCATGGTCTTTGCAAAGAGGGGGACAACTGTCGATACTCTCATGATCAAAGCAGCAGCAAGCCAGCCATGATCTGCAAATTCTTTCAGAAAGGTTGCTGTGCGTTTGGTGATCGTTGCAGGTATGAACACACCAAACCAGCCAAGCAAGAGGAACTCCCTGGCTCCATGCCTTCTGCGCCGCTTCCCGCTGCCCTCCTTGCCGTTGCTGGTGCCCCTGACTCCGTGCCCAGTGGGCCAGGTGGCACAAGCGATGCCCAGGAAAGGCCCCACAGCTCCGGGGCAGTGGACTGGGTCAATGCCGCCGAGTTTGTGCCTGGCCAGCCCTACTGTGGGAGGGACACTCTTGCGGAGGGTCCTGGACCTCTCATCGAGGACGAATATGAGAAGGAACAAGCCGACAAGGAGCTGAAGAAGCAGCTGTGCCCGTATGCCGCCGTGGGCGAGTGCCGCTATGGTCTCAACTGTGCCTATCTCCATGGCGATGCGTGTGATATGTGTGGCCTGCAGGTGCTCCATCCGTCCGACACTGCTCAGCGCTCTCAGCACATCAGGGCATGCATTGAGGCTCATGAGAAAGACATGGAGATTTCATTCGCCATCCAGCGCAGTAAGGACATGATGTGCGGCGTGTGCATGGAGGTGGTGTTCGAGAAGGCCAACCCCAGCGAGCGCCGGTTTGGCATCCTGTCAAACTGCAGCCACTGCTACTGCCTCAAGTGCATCCGCAAGTGGAGGAGTGCCAAGCAGTTTGAGAGCAAGATCATTAAGTCCTGCCCAGAGTGTCGCATTACGTCCAATTTTGTCATCCCAAGTGAATACTGGGTGGAAGACAAAGAGGAAAAGCAGAATCTCATCCAGAAATACAAGGATGGCATGGGGACTAAACCATGCCGGTATTTTGATGAGGGCCGTGGAACATGTCCGTTTGGAGCCAACTGCTTCTACAAGCATGCTTTCCCTGACGGACACCTGGAGGAGGCTCAGcctcagaaccagaaccagtcTCAACGGCGGCAAAACGGCTCCAATGGGAGGAACAGGAACTCGAGGCGCACGCCGCTGTGGGACATGTTCGACGAGCGGGAGAGCAGCGACTCCTTGGATAACGACGACGAGGAGATGGTGACGTTCGAGCTGAGCGAGATGCTTCTCATGCTCCTGGCCGCGGGGACCGACGACGACGTCACCGACTCTGAAGACGAGTGGGACTTGTTTCACGAAGAGTTGGACGATTACTACGAGCTCTACCTATAGCAGCCCTATTTTACTGCTTCTTTTCCTGTCCCCCCCTCACTAATCTTCCATGCACCTATCAATTACGCCCCTCCCCTCTTCCCCTTAATAGAAACTAGACTGGACTGTCTCGTGTGAGTGATGGGCAGTAGCGTCTTTTTCCCCCCCATGTGTTGTGGCAGTGCCTTTCAGCAGGccattaaaatgataagttcAGTTCAAAgtgaaatgaaatatatatacatatatgataaAAGAccagacaaaagaaaaaaggagaaaaaagcaaccgaaaaaaaaaaaagaaacaggtcTGTGCGCTTGTGCTAAAACCTTTTCTAGAAAACCTCCTCTGTTCTGTGAGTCTGTCTGTGTTCACTTTATGTActgataaaaaatacaaaacaatttaaaaatgacaaagacACTaagttatacatttaaaaaattggaTTATCGCTAATAAATCCTAATggttttattctgaattatagGTTTGACTTATCATCTACCCAGGTATATGGTCCCACTTAAGCGGGACTCTGAGCATACAGCAGCTTTGTAAGACTTCACTGTAACTGGTGGTGGCTGTAATGCTTTCTGGATTATTCCTCTATTCATGCACTGACTTTGATAGGGTGGGTGGCAGAGGTGAGCTTCCTTGATGTCAAATGCACACATGCACTCTTAACGTTCATAAAGACAATTCATGTCACTgaacatttaatgttttgtttctctgtatctatttctctctctctttctttctctctaattGGCCTGGAGGTCAGTTTTTAATGTACCTGAACCGTACAGGTTCAGCAGCACCTGTGGTATCAAATGGCAAGTCTCTCCTAAGAACTGCGTGTAGCGATACCTTTGTGAAATTGGACTCCCGAAAGCAGACTTAAATGCATACGATTACGAAGCTCAGTGGTTCATCACTTTAACTGTCTATTCAATTGTAGATTTCTGTTTTGCTTCAGTATTGCAATTTAAGCTCGGCTGTCAGTAGCCAATCCACAAAAACCCAGTTGTTTATTCGGTTCTTGTCGAACTTGGTTGAATTGCATATGTTTATACTGAAATGTGCTTGTTTTCTATGGTCCAGAACCATCCAACATAACTTGAAAATTAAAGTTTATTATCAAAGTATCATAGTTTATCTTTTACATTTGTCCTCacgaaataaaaacattttcataataCAGTAA

Function

symbol description
mkrn1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Is expressed in several structures, including brain; eye; gonad; integument; and liver. Human ortholog(s) of this gene implicated in central precocious puberty 2. Orthologous to several human genes including MKRN1 (makorin ring finger protein 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase makorin-1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K15687 MKRN; E3 ubiquitin-protein ligase makorin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671215.1 True 2611 mRNA 0.48 8 1984874 2001629
XM_022671216.1 False 2609 mRNA 0.48 8 1984873 2001629

Neighbor

gene id symbol gene type direction distance location
LOC103022068 asb13a.2,LOC103022068,LOC108436004,LOC108280001,LOC107754063,LOC107560715,LOC107655562 coding upstream 123035 1846538 ~ 1861838 (+)
LOC103022369 LOC103022369,LOC108436003 coding upstream 139111 1842278 ~ 1845762 (+)
LOC103022887 gdi2,LOC108436005,LOC108279819,LOC107754057 coding upstream 143446 1826840 ~ 1841427 (+)
ankrd16 ankrd16 coding upstream 159438 1812200 ~ 1825435 (+)
trnay-gua_2 NA coding upstream 172015 1812771 ~ 1812858 (+)
tmem121b cecr6 coding downstream 2213 2003842 ~ 2005246 (+)
lmo3 lmo3,LOC107757261,LOC107550907 coding downstream 272738 2274367 ~ 2324260 (+)
wif1 wif1,LOC107757271,LOC107594874,LOC107725640 coding downstream 612579 2614208 ~ 2642104 (+)
LOC103029880 NA coding downstream 651976 2653605 ~ 2657494 (+)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding downstream 1266335 3267964 ~ 3292593 (+)
G61168 NA non-coding upstream 129527 1853315 ~ 1855346 (+)
trnay-gua_8 NA non-coding upstream 163097 1821689 ~ 1821776 (+)
trnay-gua_7 NA non-coding upstream 163538 1821248 ~ 1821335 (+)
trnay-gua_6 NA non-coding upstream 166272 1818514 ~ 1818601 (+)
trnay-gua_5 NA non-coding upstream 166718 1818068 ~ 1818155 (+)
G61222 NA non-coding downstream 31374 2033003 ~ 2033287 (+)
G61233 NA non-coding downstream 89232 2090861 ~ 2094032 (+)
G61236 arhgef39,LOC107725686,LOC107655603 non-coding downstream 117170 2118799 ~ 2152586 (+)
G61302 dera,LOC107725660,LOC107655558,LOC107587132,LOC107594694,LOC107694244 non-coding downstream 413404 2415033 ~ 2424116 (+)
G61316 NA non-coding downstream 444450 2446079 ~ 2451509 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 49374 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 175943 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 503455 1445635 ~ 1481418 (+)
G61014 NA other upstream 935817 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 941557 853526 ~ 1043316 (+)
G61575 NA other downstream 1294917 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 3738926 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 3780462 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 3980607 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 4849601 6851230 ~ 6855762 (+)

Expression


Co-expression Network