LOC103029111


Basic Information

Item Value
gene id LOC103029111
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3937491 ~ 3949734 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671244.1
cacacacacacacacacacacacacactcatacacagtGTTTTCACTTCAGCATGGGAGCATGGATCTAAAGGCAGAGCTCCTGAAGTCCATCTGGTACGCCTTCACCTCTCTAGACGTCGAGCGCAGTGGGAAAGTGTCCAAGTCTCAGCTGAAGGTGCTTTCCCATAAtttatacacagctctgaacaTCCCCCATGATCCTGTGGCCTTGGAGGAGCACTTCCAGGATAACGACAATGGGCCAGTGTCCAGCAATGGCTATATGCCATACCTCAACCAGTACATTCTGGCAAAGGCCACAGAGGGTACATTTCACAAGGAGACATTTGATGAACTTTGCTGGATGATGACCGCCAAGAAAAACCTGAAGCCCATTGTCCTACAGGGCCTGTGTTCACAGAGAGACTGCTTCAAACTGTTCTGCCTCTTTAATCTGCTGTCTGAGGACCATTACCCACTTGTCGTCATCCAGCCTGAGCTGGAGTATCTTCTGAAGAAGATCTCAACAGCAATGGGTCAAGAGTGGGATGGGAAGCTGCTGGAGGTTCTGCTTGCCCAGGAGCCCTCTCTGCAGGATGGTCTGTCTGTGTGGAGCTTCCTGGAGCACCTGAGTGCGGGTCACCTCATGCAGGTGGACAGAAAGGAAGCCTTCAGTCTTGCCTTGGATGAAGTCTTCATGGAGATGTATCACAATGTACTGAAGAAAgGATACATGCTGAAGAAGGGGCATGTGCGGAGGAACTGGCAGGAGCGCTGGTTTGTGCTGAAGCCAGAGATTGTGGTCTACTATGTCAGTGAGGATCTAAAGGAGAAGAAAGGGGAGATACAGCTGGACGGAAGCTGTGCAGTGGAGACGATCCCTGATAAAGAAGGGAAGCGCTGTTTGTTCTGTGTGAAGACTCCAGTCAGGACATTCGAGATGAGCGCTCCAGACCAGAAACAGAGAGTGGAGTGGATTCAAGCTATGCAGACAGCGGTGCGGCTGAAGACAGAGGGGAAGAGCTCACTGCATCAAGAGCTGAAGCTGCGCAGGCGAGAGTTGCGGGAGTGCAGCCAGAGAAGCAGCCAGAGCAGCAGTCAGAGTGTGCCAAGCAGACAGAACAGCCAGAACGACAGCCAGGGTGTCCCGAGCAGACAGAACAGCCAGACCGGCAGCCAGAGTGatcagagaagcagagagaacaGCCAGAGTGAACTTCCTGCTGCTGAAGGTGAACAGCCCAACTCTGGGAATAATCATGGGGAGCTGGAGAACAACGAGCCAGACTTGGAGATCATAGACATCATTCAGcaacacctggaaaaggAGGCACAGCGCAAACAGGAGGAGGCACTGGAGAAAGAGAAGCAGAAGGAGAGGCAGCAAGAGCTGGAGAAACAATTAGAGGAGGCTAATACAGCCAGGGAGAGCATGGTAGCTGAACTGGCAAAAATAGAAAAGGaggtgcagcagcagaagaagaggaTTCAGGAGCTTGAGCTGACTCAGTTGAAACTGGAGGAGGCACTTAACTTACAGATTCAGGCTCGACTAGAGGAGGAGAAAATCCGGCACGAGCTTGAGAGCCAACTGGAGGAGGAGCAGGAAAAGGTGACTAAGTTGATGCTCCtccagaaacaaacagagactCCTCCTCCCAGtaagaagaaggaagaagaggTGCTTGAGCCCCAAAACAAAGAGCCTCCGAAGAAAGAGCCCCTAAAGAAAGAGCACCTAAAAGAAGAGTCCCTAAAGGAAGAGCCCATGAGAGATGAGAACAAACCGCCTTTTGCTTCCACTTCTTCATCTTCCTCCGTTCTTACTGAATCCAGCAAACCCCAGCCAAGCTCCCACCCAGGCCGTCCTCCTACAGAAACAGCTGAGACTCATCATTACAGCCCAGAGGCACAAAGAAGGGAGGAGAAAATGtcaaagaaatatttaaaatctcAGAATGTGAGACCATGGAATGTCCAAATGAACCGCCTCATGAAGCCCATCACACCGGCAGACAAGATAGAGCGTCTGGCAGTGAAGACCAACTGCCCCAAACAAGGCCAGGCACTGACCAGCACAGAGTTCATTGCCAAGTACCAACCAAACATCGCTCAGGAACTGGAATTCTCTGATAGCCAAGCACTAAGCACAGACGAGGAGGCAGAACCACAGGAGACGGTCGCTGAGGAACCACAGATGAGGAAGAGCTGAGAGGACCACAGTATTTACACAGAGACCTACAGACTCGagttatacaaaaaataatgagttCTTGTTAACAGTAAATACATTAACTATCAGAGTATAAGTTTGTCCATATTCACTGAGACTGAATGCCATATACTGTGTACACTGTTCCTAACTGTGCTACATTTACCTCCAGGGCTAGATTAGGACCCTCTGCTTTCCTTGGGCATTAGATTTAAGGTGCCCTATTCTTACAAACTCTACTTGCTTAgtaaaatgcttttataaaataactttttgagTGTTTTGAGAAGTTCCTGAAAAGGGCCGCCCCTGCTGAGTCCTGAAACCTTCTGACCCAAAGTTGAGGAGTTATGGCCAGTTAATATCCTGTGGATGCTTTGATATACTGTTGAAATTGGGAATTATTCTGGAGGTCATCCTGTGAGGCAGGACAAAATCAGACTCAGCATCAaaagcatcatttattttatatgtgtgtaatgatggTTTACATAGATGCCTTTGTCCCACAATTTTATGGTGTTCATTAGGATGACATATATTTGCATCATTAGAGACAGTGTTTAAAtagaacaaacaaaacatttcaaCAAGCTATGATGTgagacaattaaaataataaaaatataagaacTTTT

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671244.1 True 2831 mRNA 0.48 12 3937491 3949734

Neighbor

gene id symbol gene type direction distance location
LOC103031106 LOC108438797 coding upstream 83764 3847043 ~ 3853727 (+)
cfap54 NA coding upstream 242567 3656162 ~ 3694924 (+)
mcat mcat,LOC107553884,LOC107732994 coding upstream 285840 3645317 ~ 3651651 (+)
rap1b rap1b,LOC106576640,LOC107695907 coding upstream 295068 3562745 ~ 3642423 (+)
dyrk2 dyrk2,LOC107694272,LOC107757277,LOC107655591 coding upstream 563740 3342719 ~ 3373751 (+)
atxn10 atxn10 coding downstream 6928 3956662 ~ 3968956 (+)
LOC103027723 ppara coding downstream 98508 4048242 ~ 4074563 (+)
mcm10 NA coding downstream 133949 4083683 ~ 4099389 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding downstream 725625 4675359 ~ 4701435 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding downstream 1301399 5251133 ~ 5261551 (+)
LOC111192865 NA non-coding upstream 223243 3713557 ~ 3714248 (+)
LOC111192864 NA non-coding upstream 224068 3712242 ~ 3713423 (+)
G61657 rint1 non-coding upstream 239710 3695234 ~ 3697781 (+)
G61607 NA non-coding upstream 539719 3394516 ~ 3397772 (+)
LOC103028258 NA non-coding downstream 61650 4011384 ~ 4044308 (+)
G61804 NA non-coding downstream 106705 4056439 ~ 4056959 (+)
G61815 NA non-coding downstream 172948 4122682 ~ 4122963 (+)
G61790 NA non-coding downstream 180583 4130317 ~ 4131090 (+)
G61786 NA non-coding downstream 182029 4131763 ~ 4136771 (+)
G61575 NA other upstream 633493 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 2001992 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 2128561 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 2456073 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 2894175 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 1790821 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 1832357 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 2032502 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 2901496 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 4452106 8401840 ~ 8415039 (+)

Expression


Co-expression Network