LOC107197701 (zgc:101560,LOC108425328,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC107658770,LOC107584059)


Basic Information

Item Value
gene id LOC107197701
gene name zgc:101560,LOC108425328,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC107658770,LOC107584059
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4447876 ~ 4461525 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671256.1
CCGTCCTCGTCGTGtggcttgtgtttgtgtgtttgcagcAGGTCTAGGACAGTGGTGTAGGTCAGAAAGGTGGGCTGCACAGCAGGAGGCGTAACAGAGGAGCTATTTTGGGGGCGCCGTTCACATGTGGGAGGAGAGGCCATAAATCAGCCATCAGAAATCCACTACACTGATTTCTCCTCCACCATCGCTCATCTGACCACTCTCTAACCAACACTTCTCCATACAGGGCACGTAGCGCAAGGTGACCATGTCTGAGGGACCGAGAAAGTCTAAAAAATCAAGATCCAAGCCCACGTCCAATTACTCAGCCACGCGCCGGCTGATGCTGAAgACGAAACTTCTGAGGAAGGCAGAGAGTTTACTGGATAAAGAGCAAGATCAGAAGAGAATAGAGCGAGAGAACGTTCTGAACGAGAGAGCGCCTCCTCTCAAACTCTCTGGCCTCTCAGTACAGGAGCTGCAGGAACTTTGCAAGGATTTACATCACAAGATTGATATAGTGGATGAAGCGAGATATGACCTTTTACTCAAAGTGGGCAGAAACGATTCAGAGATCCAGTCACTGCACCAGAAAATCTACGAGCTGAAGGGTAAAATGAAGAGACCCAagctgaagagagtgaagaagTCAGCAGACGACATGTTGGGAGCGCTGACGGACAACAAGCTCATGAAGGCTGACTTCAAAGCCAACCTGAAGACAgtgaaaaaggaagaagaaaagAAAGAGGAGGTGACAGACTGGAGGAAGAACGTGGAAGCTATGTCTGGGATGGAGGGCAGAAAGAAGATATTTAATGCTGGCCAGTGAAGCATTGGCAAattatttttatctcttttttaaaaaaacatttttttgagcAAAGACACAGTTCTGCAAAACATGGGCCTAGTTGTTTAAAGGTAAAGATGGGTATCTGCATATGAAGGCACATATTCTGGGGCAGTTTTGTGcgtttgggtttatttttgtgtgaCTGTTTGAAATTTCGAAAAACATTAACAGATCAGCCATTTGTCTACAATAATAAAGCATAACATTGTGACCACTTCCTTTTTTCTACATccattatcattttttaaatactattttttatacttagctccactgagcatataaGGTATAAGGCCAcctttatagttctataattacactttatttattatatattcacTGTTGTGAGGGGACATAGTGTTTAAaatctccagcagcactgctgtgtctgatccaaaTCACTCAGGTTCCTAgctctgtcaggtggcattagccgctaaccgttaGCGGTCAGCcgtatgaaaatatgaaaatagaccagaaaatagacgtttattgatagacGTGCATCTTATAATCTAATTTGAAAATAcggtatacagagaaacagatacagtactacagtctgtaattatagaactacacagTGTTCcaatatgctcagtggagctaaaaaaaaaaaaggtaataggtTTAAAAACAAGGAGTTGGTCATATTGTTATGCATAATCAGTGTGTTTTGTAACACAACACTGACTCGCATGATATGTTGACTCATGATCTATTtctaatatatgtgtgtgtgtattgtcaGGAGAGAAGGATTAGACTGTGGAACAACCTAATATTCCTATCATGTcaactgtgtaaatatttaaatcatattctgcatgattaaaatgaataaatttatCCTGTGAGCA

Function

NR:

description
PREDICTED: troponin I, slow skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671256.1 True 1701 mRNA 0.41 8 4447876 4461525

Neighbor

gene id symbol gene type direction distance location
LOC103040249 tnnt2e,LOC108425385,LOC108279691,LOC107658902 coding downstream 113864 4318440 ~ 4334012 (-)
LOC111192866 NA coding downstream 320568 4124790 ~ 4127308 (-)
phyh phyh,LOC107743808 coding downstream 326120 4116738 ~ 4121756 (-)
LOC103027117 LOC103027117,LOC108438787 coding downstream 333508 4100965 ~ 4114368 (-)
wnt7b wnt7b,wnt7ba,LOC103028473,LOC107695867,LOC107725526,LOC107732964 coding downstream 457394 3968846 ~ 3990482 (-)
LOC103023194 dock4b,LOC108425388,LOC108279862,LOC107656358 coding upstream 539425 5000950 ~ 5199612 (-)
LOC103042505 LOC103042505,LOC108425390,LOC108280006 coding upstream 853032 5314557 ~ 5336399 (-)
LOC103037729 LOC108442307,LOC107676911,LOC107583751 coding upstream 995184 5456709 ~ 5494651 (-)
cmas NA coding upstream 1182984 5644509 ~ 5653023 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding upstream 1196923 5658448 ~ 5663281 (-)
LOC111192867 NA non-coding downstream 134137 4312049 ~ 4313739 (-)
G61856 NA non-coding downstream 298059 4149551 ~ 4149817 (-)
G61851 NA non-coding downstream 316912 4130339 ~ 4130964 (-)
G61837 NA non-coding downstream 348495 4083724 ~ 4099381 (-)
G61833 ppara non-coding downstream 371904 4073769 ~ 4075972 (-)
G61907 NA non-coding upstream 61634 4523159 ~ 4523371 (-)
G61930 NA non-coding upstream 135041 4596566 ~ 4596986 (-)
G61940 NA non-coding upstream 159197 4620722 ~ 4621086 (-)
G61941 NA non-coding upstream 160086 4621611 ~ 4621826 (-)
G61943 NA non-coding upstream 162362 4623887 ~ 4624210 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 21720 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 601407 3840601 ~ 3846469 (-)
G61676 NA other downstream 789608 3650845 ~ 3658268 (-)
mdm1 NA other downstream 899174 3529520 ~ 3548702 (-)
G61587 NA other downstream 1132637 3314153 ~ 3315239 (-)
G61942 NA other upstream 160688 4622213 ~ 4622577 (-)
G62377 NA other upstream 1912944 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 2171485 6633010 ~ 6695389 (-)
G62484 NA other upstream 2210085 6671610 ~ 6737948 (-)
LOC111192938 NA other upstream 2266349 6727874 ~ 6733125 (-)

Expression


Co-expression Network