ifrd1 (ifrd1,LOC108425389,LOC107726045,LOC107580056)


Basic Information

Item Value
gene id ifrd1
gene name ifrd1,LOC108425389,LOC107726045,LOC107580056
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5251133 ~ 5261551 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671258.1
AGAGACCACGTGAGCTGCGGGCGGTATAAAAGCTTTTGGCGGCGGTTCCGCGGCGCAGCCCTAGTTTTATATGGGAAAATGTATCGCTTTCGTTCACAGGCTCTCATCGGAATCGCTTTTAACTCCCTTCTTTTCACTGTGCCACTGGACGACATTCAATTTAAGAGACGCTATAGTAAAAACTGGTCGTGTATTGGCTGattttaggtttatatttgctgtgtTTATACAAGAAGGATGCCCAAGTCTAAGAAGAGGAACGGCAGGGGGGGACAGCATGCAGCTGTGCAGCCTTTCAGTGATGAGGATGCTTCCATTGAGACGCTCAGCCACTGCAGCAGCTTCAGTGATTCAGTCAGCGTGGCAGACGAAGGCGGCGAGGCTGAGGATACTGCGCAGGAGGATTTCCAGTACAAGTTGAACGTTTATATTGACTGCACGGTTGATAAAAGTGCAAAAACCCGGCAAGGAGCACTTGATGGACTAAAGACTGCAATGGCAACCAGAATACTGTATGAGTTCCTGCTAGAGAGAAGAATGACCATCACAGACAGCATTGAGCGCTGTTTGAAAAAAGGAAAAGGAGAGGAGCAGCGTGCGGCAGCCTCCCTGGCTTGCCTCTTGTGCATCCAGTTAGGTTCTGGGATTGAAAGCGAAGAGGTGTTCAAGACCCTGAAACCCATATTCAAGACCATTCTCAATGATGGAACAGCAAACATTCAGGCCAGACAGGCTtgtgcGACAAGTCTGGGCCTCTGCACTCTGGTAGCAGAAGATGATATCTTGGATGTGTACGCCACCATGGAATGCTTTGAGACTCTCTTCACCCGCTCATACGTACGAGAGGATGGCAGCAGGCCTTCACTGAACCCTCAGACCACTCAGCTCCACACTAACGCACTGCTCTCCTGGGCTCTGCTGCTCACCATCTGCAGCGCCAGTCACGTCACAGCCATCATTCACAAACATCTATCCAAGCTTCCAAGGCTACTGGAGAGTGAGGATGTCAACATGCGAATTGCAGCCGGAGAGACCATCGCTCTGCTGTTTGAGCTTGCAAGAGACGTCGACCCAGACTTTAACTCTGAGGACTGGGAGCCACTGTGTGACAAGCTGAATGCCCTGGCCACTGATTGCAACAAACATCGTGCCAAGACTGACAAGAGGAAGCAGCGGTCTGTCTTCAGGGATGTGCTGAAAGCTGTGGAGGATGGGGACTTTCAGACTGAGGCGATCCGCTTTGGCACAGAGCGGATGGTCATTGACAGCTGGGTGAGGAAGAGGACCTACGATGCTTTCAGAGAGTTTGTTGGCTCTGGAATGAACTACCATCTACAGGCAAACGAGTTCATCAGGGACGTGTTTGGACTGGGACCACCAATGCTTATTGATTCAGCTGCTCTAAAAGCTATGAAGAGCTCCCGACTGGAGAGGCATCTGTACAATGCTGCTGCATTCAAGGCTCGCACCAAGGCCAGAAACAAGTTTCGTGACAAGAGGGTGGATGTGGGTGAATTTTAGCATCCAGttttctattaattattcattttcccTGTCGTACTTATTTGGGTCCAATGTGTGTTCCTCTttgtgtgtagaatgtagtaCTGcacattgtttcttttttttttctttcttttttttttaaataacaaattaatatttagtatttatatGGTGTAACATGTAATgtgttgttgttctttttttggtGGTAATATGAATTAAacgtaaaatatgtatatgaaaTGTATGTGCACTTGCTCCCCCCAGTGGTTAGtgttgataaaataaataaatgtggaagctca

Function

symbol description
ifrd1 Predicted to be active in nucleus. Orthologous to human IFRD1 (interferon related developmental regulator 1).

NR:

description
PREDICTED: interferon-related developmental regulator 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671258.1 True 1811 mRNA 0.47 12 5251133 5261551

Neighbor

gene id symbol gene type direction distance location
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 549698 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 1151744 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 1176570 4048242 ~ 4074563 (+)
atxn10 atxn10 coding upstream 1282177 3956662 ~ 3968956 (+)
LOC103029111 NA coding upstream 1301399 3937491 ~ 3949734 (+)
LOC107197570 LOC108442310 coding downstream 160217 5421768 ~ 5423304 (+)
LOC111192904 NA coding downstream 751295 6012846 ~ 6015114 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 955260 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 1148366 6409917 ~ 6426277 (+)
pus7l NA coding downstream 1166455 6428006 ~ 6441574 (+)
G62036 dock4,LOC108425388 non-coding upstream 248229 4999241 ~ 5002904 (+)
G62030 NA non-coding upstream 263415 4987422 ~ 4987718 (+)
G62004 NA non-coding upstream 415661 4835272 ~ 4835472 (+)
G61999 NA non-coding upstream 455122 4795722 ~ 4796011 (+)
G61996 NA non-coding upstream 480960 4769937 ~ 4770173 (+)
G62069 LOC103042505,LOC108425390,LOC108280006 non-coding downstream 50354 5311905 ~ 5315202 (+)
G62086 NA non-coding downstream 98994 5360545 ~ 5360785 (+)
G62098 NA non-coding downstream 170525 5432076 ~ 5432368 (+)
G62103 NA non-coding downstream 186277 5447828 ~ 5454163 (+)
G62146 NA non-coding downstream 264227 5525778 ~ 5527065 (+)
G61575 NA other upstream 1947135 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 3315634 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 3442203 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 3769715 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 4207817 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 479004 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 520540 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 720685 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 1589679 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 3140289 8401840 ~ 8415039 (+)

Expression


Co-expression Network