LOC103037729 (LOC108442307,LOC107676911,LOC107583751)


Basic Information

Item Value
gene id LOC103037729
gene name LOC108442307,LOC107676911,LOC107583751
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5456709 ~ 5494651 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671259.1
CTGAATCATATGGAGCCTACAGCGTGCATTATGCTTTACAGATGTCTCATACTGAATCCATCATTGTCTTCCAGGAGCATGGTGAAGAAGATCTCCTCAAGATGTTTCCCATCAAACGCACTTGCAGAATGAGGAGcgtaaacagaaaaaagcaaaCCATGTGCAGTCACTGACTCGAGGCACTCTTCCCTCTCTCCTACACCCACATTTTCTTCATGAGGACAGAGAGATGACCATGCGTGGCCACTGGTCCTTCAACACCTTGGCCATCATCTTTCTACTGCTGTCGACTGCAGCCCTTTCTGCTCACTTCAGAGTGTGTGAGCCCTACTCCGACCACAAGGGGCGTTATCACTTTGGCTTCCATTGCCCACGTCTCTCTGACAACAAGACCTACATGTTCTGCTGTCACCATAACAACACCGCCTTCAAGTACTGCTGCAATGAGACAGAGTTTCAGACCATCATGCAGCTCAACATCACCACCAACTCTGACGGCTTAACTCACAATAATTACACCGCTCTTATTGGTGTGTGGATTTATGGCTTCTTCGTCATGGTCCTGCTCGCACTGGACTTCCTGTACTACTCAGCCATGAACTATGAGCTGTGTCGAGTGTACCTGGAGAAGTGGGGGCTGGGTGGTCGGTGGTTAAAACAGGCCAGGATTCAGTGGCATGGAGTAGCTGTGGTTCAGGAAGGAGAGGTGAACCCTGGGACGGTAACAAGCCACGCCCCACATCAACATCATCACCCCAGACACAGCCTGACAGGCGAAGCACAGAGCCCAACCCTTATGACCTTCCAGACCTCCACAGCCTGTTGTCTGGCCCTGCTCTTACTACCCCGGACTACCGTtctcaacacacacaatcacacATGTTTGAAGCTTCAATCATTAGGACATACTGTGCTTAGAGTACAGGAGAAGCTGCAGAGTTACAGTACAGCCACGGCCAACTGGAAACTCACCGGTTTCCCTCCAAGGCCTTATCTACCTTTAAAACGGACAGTCCGCTCCAGTGAGGAAGACAACAATGGACACTGAGGAAATGAAATTCAGCTGCTCCGTATTCTGTCCTGCAGAAGAAGCACTTTCTTCATCGTTTTGACTGCAACTTGTCCTACTGTAAACAGCTGTGGTTTAGGAACCTTAAGTCCTCTTAAGCTTAAGGAAACAGAGTTCAGGTCAGTAAGACCAGACTTTCTCGTAACGATAAGACGGATTCTGTATTCTGATTCTGTATTTTTCTGGCCTGACTTTCCTAAAGCAAGGAAGGATTATTTATAATGGCTGCAACTATCATACCAGCTCTGTAGTGCTTTCAACCAGAAAGAACGATGGACAGAATGAAATGATTCAATTCTGGCTTTAACTGACTAAGTCTAACAAGTGCGTTCAATATTCATCATACAGTTTGTCAAAAAAGATACTTCCTTTTTGCTTCACCTTCATACTTAAGgcaggaaaatgtattaatgcCTGGATATACAAATGTGTAATGCTATCCAAGCATTAAcatcattcatttaaaagaacATTTGTACTCTTGCAATATGGTGAAGTACTTTAAACTACTGAAGTCACATAGCATCAGACAAAGCAATATGTAATGGCAGAACTTGATGAAAATGTGTCGGTCTTTACTTGTGTGTTTCTTAATTAATTGATCATGTGATGCTCCCTCATAGAgctttgtttttactttaagCAAAGCCATAGGAATAAATGGACCCCTTAGCTGGCAGTAGTTTTATTTTCACTGTGGAAAATGTGCACTGACTTCAGGTACGTATTTAGAAATAGGTAAAGCCAGTGGCTATTTAGACCATAGACATCTTCCCGCACTAATGCACAGTGTTGTGTTGCATTAGATGGTATTAGAACGAGATCTCTGTGTgatcatgctgttttttttaattgttttaggtGAATCTAATTTCTCCTCCTGACAGACAGAAGAGAGACATGCTCAGTGTTGAAGTAATGGGTTCTGGTGATAGTATAGTTGCCTTACAGTAAGTCTGTAGTGCACACCTTGCATCATTGTGTTAGGTATTTCAGTCCAGGTGAAGTACAGCAGTGCACTTGTCATTTCTGTGGGTTTTATGACTGCGTGGAGTGTGTGGACGCAGTCCGGTTGTAATTGCACTTGTTAACTTTTTACTGTCGCAAACTGCGAGAATAAAGATCTATCTTTtgcagtgtg
>XM_022671260.1
CATATGGAGCCTACAGCGTGCATTATGCTTTACAGATGTCTCATACTGAATCCATCATTGTCTTCCAGGAGCATGGTGAAGAAGATCTCCTCAAGATGTTTCCCATCAAACGCACTTGCAGAATGAGGAGcgtaaacagaaaaaagcaaaCCATGTGCAGTCACTGACTCGAGGCACTCTTCCCTCTCTCCTACACCCACATTTTCTTCATGAGGACAGAGAGATGACCATGCGTGGCCACTGGTCCTTCAACACCTTGGCCATCATCTTTCTACTGCTGTCGACTGCAGCCCTTTCTGCTCACTTCAGAGTGTGTGAGCCCTACTCCGACCACAAGGGGCGTTATCACTTTGGCTTCCATTGCCCACGTCTCTCTGACAACAAGACCTACATGTTCTGCTGTCACCATAACAACACCGCCTTCAAGTACTGCTGCAATGAGACAGAGTTTCAGACCATCATGCAGCTCAACATCACCACCAACTCTGACGGCTTAACTCACAATAATTACACCGCTCTTATTGGTGTGTGGATTTATGGCTTCTTCGTCATGGTCCTGCTCGCACTGGACTTCCTGTACTACTCAGCCATGAACTATGAGCTGTGTCGAGTGTACCTGGAGAAGTGGGGGCTGGGTGGTCGGTGGTTAAAACAGGCCAGGATTCAGTGGCATGGAGTAGCTGTGGTTCAGGAAGGAGAGGTGAACCCTGGGACGGTAACAAGCCACGCCCCACATCAACATCATCACCCCAGACACAGCCTGACAGGCGAAGCACAGAGCCCAACCCTTATGACCTTCCAGACCTCCACAGCCTGATGTTTGAAGCTTCAATCATTAGGACATACTGTGCTTAGAGTACAGGAGAAGCTGCAGAGTTACAGTACAGCCACGGCCAACTGGAAACTCACCGGTTTCCCTCCAAGGCCTTATCTACCTTTAAAACGGACAGTCCGCTCCAGTGAGGAAGACAACAATGGACACTGAGGAAATGAAATTCAGCTGCTCCGTATTCTGTCCTGCAGAAGAAGCACTTTCTTCATCGTTTTGACTGCAACTTGTCCTACTGTAAACAGCTGTGGTTTAGGAACCTTAAGTCCTCTTAAGCTTAAGGAAACAGAGTTCAGGTCAGTAAGACCAGACTTTCTCGTAACGATAAGACGGATTCTGTATTCTGATTCTGTATTTTTCTGGCCTGACTTTCCTAAAGCAAGGAAGGATTATTTATAATGGCTGCAACTATCATACCAGCTCTGTAGTGCTTTCAACCAGAAAGAACGATGGACAGAATGAAATGATTCAATTCTGGCTTTAACTGACTAAGTCTAACAAGTGCGTTCAATATTCATCATACAGTTTGTCAAAAAAGATACTTCCTTTTTGCTTCACCTTCATACTTAAGgcaggaaaatgtattaatgcCTGGATATACAAATGTGTAATGCTATCCAAGCATTAAcatcattcatttaaaagaacATTTGTACTCTTGCAATATGGTGAAGTACTTTAAACTACTGAAGTCACATAGCATCAGACAAAGCAATATGTAATGGCAGAACTTGATGAAAATGTGTCGGTCTTTACTTGTGTGTTTCTTAATTAATTGATCATGTGATGCTCCCTCATAGAgctttgtttttactttaagCAAAGCCATAGGAATAAATGGACCCCTTAGCTGGCAGTAGTTTTATTTTCACTGTGGAAAATGTGCACTGACTTCAGGTACGTATTTAGAAATAGGTAAAGCCAGTGGCTATTTAGACCATAGACATCTTCCCGCACTAATGCACAGTGTTGTGTTGCATTAGATGGTATTAGAACGAGATCTCTGTGTgatcatgctgttttttttaattgttttaggtGAATCTAATTTCTCCTCCTGACAGACAGAAGAGAGACATGCTCAGTGTTGAAGTAATGGGTTCTGGTGATAGTATAGTTGCCTTACAGTAAGTCTGTAGTGCACACCTTGCATCATTGTGTTAGGTATTTCAGTCCAGGTGAAGTACAGCAGTGCACTTGTCATTTCTGTGGGTTTTATGACTGCGTGGAGTGTGTGGACGCAGTCCGGTTGTAATTGCACTTGTTAACTTTTTACTGTCGCAAACTGCGAGAATAAAGATCTATCTTTtgcagtgtg

Function

NR:

description
PREDICTED: uncharacterized protein KIAA1644 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671259.1 True 2210 mRNA 0.44 6 5456709 5494651
XM_022671260.1 False 2147 mRNA 0.44 5 5456709 5494645

Neighbor

gene id symbol gene type direction distance location
LOC103042505 LOC103042505,LOC108425390,LOC108280006 coding downstream 120310 5314557 ~ 5336399 (-)
LOC103023194 dock4b,LOC108425388,LOC108279862,LOC107656358 coding downstream 257097 5000950 ~ 5199612 (-)
LOC107197701 zgc:101560,LOC108425328,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC107658770,LOC107584059 coding downstream 995184 4447876 ~ 4461525 (-)
LOC103040249 tnnt2e,LOC108425385,LOC108279691,LOC107658902 coding downstream 1122697 4318440 ~ 4334012 (-)
LOC111192866 NA coding downstream 1329401 4124790 ~ 4127308 (-)
cmas NA coding upstream 149858 5644509 ~ 5653023 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding upstream 163797 5658448 ~ 5663281 (-)
abcc9 abcc9,LOC108439416 coding upstream 170250 5664901 ~ 5726283 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding upstream 601689 6096340 ~ 6119766 (-)
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding upstream 645311 6139962 ~ 6144208 (-)
G62127 NA non-coding downstream 4452 5445563 ~ 5452257 (-)
G62125 NA non-coding downstream 6432 5443582 ~ 5450277 (-)
G62121 NA non-coding downstream 24321 5432090 ~ 5432388 (-)
G62089 NA non-coding downstream 57520 5398954 ~ 5399189 (-)
G62087 NA non-coding downstream 95915 5360545 ~ 5360794 (-)
G62147 NA non-coding upstream 31142 5525793 ~ 5526860 (-)
G62150 NA non-coding upstream 34045 5528696 ~ 5530196 (-)
G62210 NA non-coding upstream 236377 5731028 ~ 5732187 (-)
G62217 NA non-coding upstream 264812 5759463 ~ 5761833 (-)
G62237 NA non-coding upstream 433841 5928492 ~ 5967717 (-)
G61942 NA other downstream 834132 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 1030553 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 1610240 3840601 ~ 3846469 (-)
G61676 NA other downstream 1798441 3650845 ~ 3658268 (-)
mdm1 NA other downstream 1908007 3529520 ~ 3548702 (-)
G62377 NA other upstream 879818 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 1138359 6633010 ~ 6695389 (-)
G62484 NA other upstream 1176959 6671610 ~ 6737948 (-)
LOC111192938 NA other upstream 1233223 6727874 ~ 6733125 (-)
LOC111192940 NA other upstream 1292691 6787342 ~ 6859670 (-)

Expression


Co-expression Network