nell2 (nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859)


Basic Information

Item Value
gene id nell2
gene name nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6216811 ~ 6334340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671271.1
ATGTGGAGGAGTGTGCGAGCCTCAGCAGGCGTTTCCGAGCGGATGATGCAGAAGCTCAGAGGAAGGGTGGAATTCACCCTCCTGCTGACCCTCAAACAGGACAAATTCAACTCCGGGGTGATGCTGTCCATACATCATGGAGAGCAGAGGTATTTGGAGCTGGAAAGCAGCGGGCAGCGCAGTGAGGTGCGGCTGCACTACTGGACGGCAGAGCGGCAGATCCACACCGAGGTGTTTCCCTACAGTCTGGCAGATGGCCGCTGGCACAGAGTGGCCCTGTCACTGAGTGCCACACAGCTGGTGCTGTACGTGGACTGCAGCAGAATCTATGAGAGGGTTGTGGGAACGCCGTCTATGGAGGTTCCTGCAGGGTCAACTGTCTGGCTAGGACAGAGAAATAATGCACACGGTTTCTACAAGGGTGTGATGCAGGATGTTCAGTTGCTTCTCATGCCTCAGGGATACATTTCTCAATGTCCAGACCTCAACCGCACTTGTCCCACCTGCAATGATTTCCACGGTCTGGTGCAGAAAATCATGGAGCTTCAGGACATTTTGGCCAAAACATCTGGAAAGCTTGCACGGGCTGAGGAGAGGATGAGGGCTTTAGATGGCTGCTACTGTGAGAGAACCTGCTCTATGAATGGAGAGCTCTATAGAGATGAGGAAGTGTGGATAGACGGCTGCAGGAACTGCACATGTTCGAACGGCACTGTTGAATGTGAGAGCATCTTCTGTCCTGTACCTCAGTGTCCTCCAGACACTGCAGCAGCCTACATTCCTGCAGCCTGCTGTAAAGAATGCCAGCctgtgTGTCTTTTCAGGGGGCGGGTGTATGTGGAGGGTGATCGTAGGAGTGTGCGTGACTCTACAGGGAACTGTCTGCTCTTTGAGTGCAGGGATCGTAGCATGCGAAGAGCTGAGAGCACACCATGTCCAGAGCTGACCTGCCCCGAGTCAGAGCAGATAACCCTCACAGACCGCTGCTGCAAAGTGTGTCGAGGACATGATTTCTGCGCAGAGggctacagcagcagctgtgtggaGAACTCCGAGTGTGTGAATCTGGAGGCAGGAGCCTGCTGCAACTGTAGGGACGGCTACCAAGCGCTGCGGGATGACAGCGCTTACTGTCAAGACGTTGATGAGTGTGCGGAGGGGAAGCACTACTGCAGGgagaacactgtgtgtgtgaacacacCGGGATCCTTCATGTGTGTCTGCCAAACCGGCTACATCCGGATTGATGACTACTCTTGCACTGAGCATGATGAGTGTGGAAGTGGGCTACACAGCTGTGATGAGAATGCGCTCTGCTTCAATACAGTGGGAGGACACAGCTGCACCTGCAAGCCAGGATACATGGGTAATGGCACGGTCTGCAGAGCACATTGTGATGGGCTGTGTCATAATGGAGGCACCTGTGTAGCTCCAGACACGTGCATCTGCCAGCAGGGCTTCACCGGGAGGAGATGTGAAACAGACATTGACGAGTGCTCAGATGGCTTTGTGGAGTGTGACAGTCGAGCCACCTGTGTGAACCTGCCTGGCTGGTATCATTGCGAATGCCGCGATGGCTACCACGACAACGGGATGTTTTCAGCCAATGGGGAGTCATGTGAAGATATTGACGAGTGTGAGACGGGGAGACACAGCTGCGCTAATGACACACTGTGTTTTAATATGGACGGAGGATACGACTGCCGCTGCCCTCATGGGAAGAACTGCTCAGGAGACTGCGTTCACGATGGGAAAGTCAAACACAACAGGCAGATCTGGGTGCTGGATGACGACAGGTGCTCTGTCTGCTCCTGCCAGTCTGGTCTGGTGATGTGTAGGCGGATGGTGTGTGACTGCGAGAACCCGACGGTGGACGTGTCTTGCTGTCCAGAGTGTGACCCTCGTCTCACCTCTCAGTGTTTGCAGCAGAACGGTCTTCTGACGTACAACAACGGAGACACCTGGGTGGAGAACTGCCAGCAGTGTCAGTGCATGCGTGGGGAGGTGGACTGCTGGCCGGTGCCGTGCACTCCTGTGCTGAATTGTGAGTTCTTGGTGGTCCCTGAAGGCGAGTGCTGCCCCCGCTGCATTTCTGACCCCTGCCAGGCCGACACGGTGCGAAACGACATCACCAAAACCTGCGTGGATGAGTACGGTGTCACACGCTTTAGCGGCTCGGCCTGGACCAAACACAGCACTGAATGCTCTCTCTGCCAGTGCAAGaACGGCCACGTCTGTTGCTCTGTGGATCCTCTGTGCCTTTAGTGCCATTCAAAAGGCAACTCTATTGCTTTACTGCCCttgtttctttctgtcttttttttcttcctctctctctctctctctctctcctcttatcGTGCTGTACAGTCTCATTTCACatcagaaaatgtgtttttctttttatttactggGTGTGCAGTACAGGAACACACACAATGCAGCTGTCGCTCAGCAGTGGGTCACATGCATCAGACTTTTTCACTTCTCGTTGTGAACAGACTGGCCTGAGAGCAGCTTTAGCTTTTGATACTCTTATCAGATTTAATCATTTGGACTAAAGAAAGATGTTTGATGCAGATGAATCTCAGAAAGAACAGCATAGAGGAAAATCTAATTAACATGCTTAGTCATTTGCTCCAGATGAACTCAGTCAGCCCTGTTATATTTGGTTATATCTTATCTTAATATTCAGTTTGAAACATAACGTTAATAAGAAACACTGGACTTGGACTGTGACCAATCCCATCTCTGTAAATACATTCcataattacaaaatatttgCACTGGTGTAACTTAAGGAACAGCTGTGATGATGGTGTTCATTGCTTTGGCTGGTTGATTGCATCTGGAGTACACTagatatgaacaaaagtattgggggGGGGTTCTATTCCACTCTAGCCCACTTCAGACATCCGGCATTAGGCATGGTCCCATCCGATTTAGGGGTTccactttaaatatataaggctcctttataaagggtgtaTAGATATAGTTTATAACGGAGTTTATtgatgttattaattaggttgtaaatgctttataaaccattaataagcagttacaacacatacatagCAAGGAGAAcagtgacctgttgtttgccaaatagtgattccacattcatttatactgtcaaacctTGCTTTGTCTGCTCCATCAGTCAGCAGTTAGCAGTCATAAACATGTCTGTTAATAACATCTGTTATTACCGTTAACTACCCAGATTAATAATTTATCCAATAATCATAACTTGATGTATGTTAgcataaaataacagtaataaactgAATTGATTTTCCATATTATTTAATTAGGTATGTTAATGCTggctgatg

Function

symbol description
nell2b Predicted to enable heparin binding activity and protein kinase C binding activity. Predicted to be active in cytoplasm. Orthologous to human NELL2 (neural EGFL like 2).

NR:

description
PREDICTED: protein kinase C-binding protein NELL2-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24342 NELL; protein kinase C-binding protein NELL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671271.1 True 3344 mRNA 0.49 18 6216811 6334340

Neighbor

gene id symbol gene type direction distance location
LOC111192904 NA coding upstream 201697 6012846 ~ 6015114 (+)
LOC107197570 LOC108442310 coding upstream 793507 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 955260 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 1515376 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 2117422 4083683 ~ 4099389 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 75577 6409917 ~ 6426277 (+)
pus7l NA coding downstream 93666 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 267043 6601383 ~ 6632805 (+)
zcrb1 zcrb1 coding downstream 361250 6695590 ~ 6703894 (+)
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding downstream 423214 6757554 ~ 6771361 (+)
G62311 NA non-coding upstream 30681 6182851 ~ 6186130 (+)
G62309 NA non-coding upstream 39306 6177224 ~ 6177505 (+)
G62287 NA non-coding upstream 44643 6171213 ~ 6172168 (+)
G62284 NA non-coding upstream 142185 6074289 ~ 6074626 (+)
G62280 NA non-coding upstream 171386 6045174 ~ 6045425 (+)
G62367 NA non-coding downstream 29997 6364337 ~ 6364626 (+)
G62386 NA non-coding downstream 61946 6396286 ~ 6396553 (+)
G62400 NA non-coding downstream 96251 6430591 ~ 6531823 (+)
G62420 NA non-coding downstream 331055 6665395 ~ 6673458 (+)
G62431 NA non-coding downstream 400141 6734481 ~ 6734828 (+)
c7h12orf75 NA other upstream 222817 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 249076 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 451026 5740555 ~ 5765785 (+)
G61575 NA other upstream 2912813 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4281312 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 516890 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 2067500 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 2191878 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 3097159 9431499 ~ 9440564 (+)
G63051 NA other downstream 3312239 9646579 ~ 9650087 (+)

Expression


Co-expression Network