LOC103023466 (twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122)


Basic Information

Item Value
gene id LOC103023466
gene name twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6409917 ~ 6426277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671272.1
CACGCCGCAGGGCGGGGCCTGGGCGCTGCGCTCCGTTTCCgtgtttctgcagctcctccggTCGACGAGAGCGAAGAGCCGCGATGTCTCACCAAACCGGCATCCAAGcCACGGCTGAAGTGAAAGACATATTTGCCAAAGCACGGAATGGAGAGTATCGTCTGATCAAAGTCGTGATTGAAAATGAACAGCTTGTGCTGGGAGGAACCAAACCAGCAGCCAAGAAGTGGGACCAGGAATGGGACAGTTACGTTCTCCCTCTGCTGCAGGATGACTTGCCCTCCTACCTCCTCTACAGGCTAGACACCACCAATAACCAGGGCTATGAGTGGATCTTCCTGGCATGGTCACCAGACCACTCCCCTGTCCGGCAAAAGATGCTGTATGCTGCTACCAGGGCAACACTAAAGAAAGAATTTGGTGGTGGGCACATAAAAGAGGAGATCTTTGGCACGGCTAAGGATGATGTTTCTCTCAATGGATATAAAAGGTACTTGACCTCCCAGGCTGCTCCACTCCCACTGACGGCTGCTGAGGAGGAACTGAGGCAAATCAAACTCAGTGAGgTGCAGACAGACATCCACATAGACACTAAGCAGCAGACTCTGCAGGGTGTAGCTTTTCCAATGCAGAGAGATGCTATTCAGGCCCTGGAGCAGttcagagagaagagagtaaaCTATGTTCAACTtGAAATAGATTTTCCGAATGAGTCCATCAAGTTGTCCAGCACAGCTCCCACAGAGTTGAAGGACCTGCAAAGAATCCCTAAAGATGCTGCACGCTACCACTTCTTCCTctacaaacacacccatgaagGAGACTACTTGGAGTCCACAGtgtttatcTACTCGATGCCTGGTTATAAGTGCAGCATTCGGGAGAGGATGTTGTACTCCAGCTGCAAAAATCCCCTCATAGACACAGTGGAAAAAAACCTACGCATTGAAGTTGCCAAAAAgctggaGATTGATAATGGCGATGAACTCACCAGTGATTACATGTATGAAGAGGTGCACCCCAAGCAGCATGCGCACAAGCAAGCCTTTGCCAAGCCCAAGGGGCCAACCGGGAAGAGAGGTGGACGCAGAATCACACGTCCACCGGGGGATggggatgatgatgattaatGCCTAACTTGTCTCCATTTTTTAGCCTATCAGTGGTACAACACACCTCCAGTGATGAGCCCTTGTTATAACTTACCTCCCAGTTTACCTGCAGCCCACATCCCCATAGCTTTATCTATGCACAAAAAAGAACACTAATCTAGGACCATCTGAAGAGCATTTGGATGCATCTGTGATTAATATGGTGACACTCCTTAACACTACATTACACATTTTAGCTGGAATACGGACAAGCTTCTCAGATGCATACTACAACCCAGCTTTGGAATGAAAGCCAGGACTATTCTGTAGCCCTATGCAATTGTTTGACCCTCAGGAAGGCTGAAAGGTCAGCTGTTTTTTCCCTTCGTTTGTCTGGGTCTTATTGATTAACTTTCTCTGCATTTTAGCAGGATGTCAGCAGTTGATTGCTTTTTACCTAAACAGAGACCTTATGACTCAGAGAGTGAGTTAATCAATAGCACACCGGACATTTGACATGTCTGAGCTTTGTAGCCCTTTTGTTTGGAGTCAGATCATTTTAATGAAGGAGTTGCTCAGTGCAACCAACCCATGAAGAAATTCTACCATTTTTATAATGCATTGAATGTAGGTATTAACTCTTTTGTGATTTGTAATGTGTAGAGGACTTTAATAATAGAGAGGATGCCTTTTCTAAAGGACCCATTTTGTCTGAGAAATCTGAATGATTGATTGATGCTCTCTGCattgaaaaatgtttttcacattCTTCAAGTGAAATATAAGCTTGTAGAAACACTATTTTTCTAAACCTGAACAGCTGGTATGTCCACATCAAGTTTGTTCTGTCACAGTGGCTATCCTGTTTGTCTCGGAGAATGTTTGCTTCCAGGAAATTGCATGGCATTCACTTCCTTTTAACATGCATTAAGTTTACACAGCATCTCTACGGAGAAAACAACACTAAAGGAACAGTACAATAGTTGATCCTCAAAGAACATTTTTGCCCAGTTTTCTGGGCAAACTCTACAGGGGAAGTGTGTGCTTTCATGTACAAAACACAGCTTACCATCTGTAGGCCCCCAAACTAGGACTACAACCATGTAACCATTGTCCTTATATGTCCTTACATAATTGTCATATTTTACCCAACCTTTTTgccaaaaaacatttacaaaatcaGGCAAATAACCATTTAAGAatccagtaaaaaaatataaaaaaaaaacacagaggaaCAACATCAGACTACTCCTTTAAAACCTCTCAGAAGGGAAAAGGACTTCAGTGAAGAGATCCGTCTACTGAACAGGCAAACCACTATAAGCATTTCTCTTGAGTGTTATGAAGTCTTGAATGTCAGCGTCATTGTTCAGTGTAATgtctcaaatgtttttttaacaaatcaaAATGTATGAGATAgggaaattaaaaatatttaaatcaca

Function

symbol description
twf1b Predicted to enable actin filament binding activity and actin monomer binding activity. Predicted to be involved in actin filament depolymerization; negative regulation of actin filament polymerization; and regulation of plasma membrane bounded cell projection organization. Predicted to act upstream of or within negative regulation of actin filament polymerization. Predicted to be located in cytoskeleton. Predicted to be active in actin filament and myofibril. Is expressed in gut and nervous system. Orthologous to human TWF1 (twinfilin actin binding protein 1).
twf1 Enables ATP binding activity and actin binding activity. Involved in regulation of actin phosphorylation. Located in cytosol and nucleolus.

NR:

description
PREDICTED: twinfilin-1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K08870 TWF; twinfilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671272.1 True 2539 mRNA 0.44 10 6409917 6426277

Neighbor

gene id symbol gene type direction distance location
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding upstream 75577 6216811 ~ 6334340 (+)
LOC111192904 NA coding upstream 394803 6012846 ~ 6015114 (+)
LOC107197570 LOC108442310 coding upstream 986613 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 1148366 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 1708482 4675359 ~ 4701435 (+)
pus7l NA coding downstream 1729 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 175106 6601383 ~ 6632805 (+)
zcrb1 zcrb1 coding downstream 269313 6695590 ~ 6703894 (+)
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding downstream 331277 6757554 ~ 6771361 (+)
LOC103047680 LOC108439417 coding downstream 355971 6782248 ~ 6793867 (+)
G62386 NA non-coding upstream 13364 6396286 ~ 6396553 (+)
G62367 NA non-coding upstream 45291 6364337 ~ 6364626 (+)
G62311 NA non-coding upstream 223787 6182851 ~ 6186130 (+)
G62309 NA non-coding upstream 232412 6177224 ~ 6177505 (+)
G62287 NA non-coding upstream 237749 6171213 ~ 6172168 (+)
G62400 NA non-coding downstream 4314 6430591 ~ 6531823 (+)
G62420 NA non-coding downstream 239118 6665395 ~ 6673458 (+)
G62431 NA non-coding downstream 308204 6734481 ~ 6734828 (+)
G62425 NA non-coding downstream 372063 6798340 ~ 6830009 (+)
LOC111192941 NA non-coding downstream 497901 6924178 ~ 6942785 (+)
c7h12orf75 NA other upstream 415923 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 442182 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 644132 5740555 ~ 5765785 (+)
G61575 NA other upstream 3105919 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4474418 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 424953 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 1975563 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 2099941 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 3005222 9431499 ~ 9440564 (+)
G63051 NA other downstream 3220302 9646579 ~ 9650087 (+)

Expression


Co-expression Network