zcrb1 (zcrb1)


Basic Information

Item Value
gene id zcrb1
gene name zcrb1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6695590 ~ 6703894 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671276.1
TAATTTTGAAAACCTACACTGTTTGATATCTCTGCTTTCACAGTGCATAGGCAGAATCCTTGTAGCATCATTAATCTAGCTTGATTAAATAAGTagctaagttagttagttaaagtGCACTTCATCgtaacacagacatacacacacgttGGCGCAGCGCTGTATTCGTTCTCTGCTTGaaGCAAGATGAGTGGCGGGTTAGCACCGAGCAAGAGCACTGTTTATGTTTCCAATCTGCCGTTTTCTCTGACTAATAACGACCTGCATAAGTTGTGCACCAAATATGGAAAAGTTGTGAAGGTGACTGTTGTTAAAGATAAACACACACGGATGAGCAAAGGTGTTGCATTCGTGCTGTTCCTTGACAGAGAGTCAGCCCACAACTGTTCTCGAGCACTAAACAACAAACAGTTGTTTGGCAGGACAGTGAAGGCCAGCATTGCTATTGATAATGGAAGAGCTGCTGAGTTTATCCGGAGGAGAAACTACTCAGACAAGTCTAGGTGTTATGAGTGTGGTGAAGATGGTCACTTAAGCTACGCCTGCCCAAAGAATTTGCTTGGAGAAAGAGAACCTCcaccaaaaaaggaaaagaaaaagaagaaaaagacaaaacaacctGAAGAAGTTGAGCCTGAAGACAGCGCAGATGAGGGAGAAGACCCTGCACTCGACAGTTTGAGTCAGGCAATCGCTTTCCAGCAAGCTCACatggaagaggaagagaaacgAAGAAAACAAGCCACAGAAGACTCAGCCCAGGCCTCCACATCAGATAACTCGCATAAACCCAGGATCAAAAAGAGCGCCTACTTCAGCGACGAGGAGGAGCTCAGTGACTGATAAATATTCTGAAGTTCTTAAGGCATACCTTATTTGCAAATCAGTGAGCTTTTACATCAAACAACATTTCTGAAGGGCTTCCTCAAAGGCTTATCATCAAGGAAATGGAGGTGaaatttctttacatttaataaagttCCTTTACTTTGCAGCAAAAGTCCTTAGTTACTGATTCCACGTTCAAAACACTTCAACTTGATGTGTGAAGCTGTAAAATGGTATTTAGATAAATTATTGATTTCATCATCACCTGTGtaaggatatatatattttttttttcgttctcTGATATGTTGTAAATATAGTTTAGTTGAATGTGGATTATATGCTGTAATTTGAGTaaataaacctttttattttttagatcttAA

Function

symbol description
zcrb1 Predicted to enable RNA binding activity and zinc ion binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human ZCRB1 (zinc finger CCHC-type and RNA binding motif containing 1).

NR:

description
zinc finger CCHC-type and RNA-binding motif-containing protein 1-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13154 ZCRB1; U11/U12 small nuclear ribonucleoprotein 31 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671276.1 True 1214 mRNA 0.40 8 6695590 6703894

Neighbor

gene id symbol gene type direction distance location
LOC103021937 LOC108439409 coding upstream 62785 6601383 ~ 6632805 (+)
pus7l NA coding upstream 254016 6428006 ~ 6441574 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding upstream 269313 6409917 ~ 6426277 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding upstream 361250 6216811 ~ 6334340 (+)
LOC111192904 NA coding upstream 680476 6012846 ~ 6015114 (+)
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding downstream 53660 6757554 ~ 6771361 (+)
LOC103047680 LOC108439417 coding downstream 78354 6782248 ~ 6793867 (+)
foxp2 foxp2 coding downstream 249122 6953016 ~ 7094083 (+)
mdfic mdfic coding downstream 435957 7139851 ~ 7170640 (+)
arl1 arl1 coding downstream 845191 7549085 ~ 7553250 (+)
G62420 NA non-coding upstream 22132 6665395 ~ 6673458 (+)
G62400 NA non-coding upstream 163767 6430591 ~ 6531823 (+)
G62386 NA non-coding upstream 299037 6396286 ~ 6396553 (+)
G62367 NA non-coding upstream 330964 6364337 ~ 6364626 (+)
G62311 NA non-coding upstream 509460 6182851 ~ 6186130 (+)
G62431 NA non-coding downstream 30587 6734481 ~ 6734828 (+)
G62425 NA non-coding downstream 94446 6798340 ~ 6830009 (+)
LOC111192941 NA non-coding downstream 220284 6924178 ~ 6942785 (+)
G62471 NA non-coding downstream 398386 7102280 ~ 7102659 (+)
G62576 NA non-coding downstream 490882 7194776 ~ 7194982 (+)
c7h12orf75 NA other upstream 701596 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 727855 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 929805 5740555 ~ 5765785 (+)
G61575 NA other upstream 3391592 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4760091 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 147336 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 1697946 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 1822324 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 2727605 9431499 ~ 9440564 (+)
G63051 NA other downstream 2942685 9646579 ~ 9650087 (+)

Expression


Co-expression Network