foxp2 (foxp2)


Basic Information

Item Value
gene id foxp2
gene name foxp2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6953016 ~ 7094083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671286.1
CCAAATACTCGGCGGAATACATCTTGATGTAGTGAATCGTaacgccaaaaaaaaaaaaaacaagctgctGCCTCGTATTGCGCCTCGTGCGAGAGCATTGTAACAGGACTCAGTGTACTCGGCgtgctttttttctgtgttgcaTTAGTAATAACAGCAGCGCGCTGACTGAAGACAGGAGGCAACGCGTGTGCATCTCCGAGCGGAGGGATACCTCGGCGTTTTATTTACTCTGCGGCttgttgttcatttttttttaagaaagaaaaaaaagctgcttTTATGATTATTAGCTTGTGCGCTCACGTGCGCGTTTCCCTCACGGCGCCGACAACAGCGTTTCCACGCAGagctttctgtgttttttgttgctgcTACCCACGGAGGAAATAAGCGCGTGTTTTGATCCTTTGCATACCCGGACTGACTCTTCAAAGACGGACATCTTTTGAAAGTTTTTCTCCCCTCAGGGATGAGATCTGGTATGGCAGTTGCACACTGCACAGCCCGAGCACTCTGAAGCCAAGGCAGAAGTGGTATTAAGTCATGATGCAGGAGTCGGCCAGTGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCACCCTAAGCAGCCAATTAGATGCTGGCAGTAGAGATGGAAGATCAAGCGGTGACACGAGCAGCGAAGTAAGCACAGTCGAGCTGCTGCATCTGCAACAACAGCAGGCCCTACAAGCAGCAAGGCAATTACTCTTACAGCAACCAGGCAGTGGCCTGAAGTCTCCAAAGAACAACGACAAACAGCGTCCGCTGCAGGTGCCGGTGTCAGTGGCCATGATGAGTCCGCAGGTCATCACTCCCCAGCAGATGCAGCAGATCCTCCAGCAGCAGGTCCTTTCCCCTCAGCAGCTCCAGGCCCTTCTACAGCAACAGCAGGCAGTCATGCTGCAGCAgCAACATTTGCAGGAGTTCTACAAGAAGCAGCAGGAGCAGCTTCACCTCCAGcttctgcagcagcagcatcccaGCAAACAGGCAAAAGAGcaacagcagcagcatcagcagcagttagcgGCACAGCAGCTGGTGTTTCAGCAGCAGCTCCTGCAGatgcagcagctccagcagcagcagcacctgctGAACATGCAGCGGCAGGGCCTGCTCTCTCTGCCCCCAGGCCCAGGACAGCCCACCCTGCAAGGACAGAGTCTACCACCAGCCGGCCTGAGTCCGGCCGAGCTCCAGCAGCTGTGGAAGGATGTGACCAGCAGCCACACCATGGAGGATAACGGCATGAAGCACAGCGGCCTGGACCTCAGCACCACCAACACTTCCTCCACTacctcctccaccacctccaaaGCTTCTCCACCCATCTCCCACCACCCCATCTCCAACGGCCAGTCCCCAGCCCTGAACAACCGCAGAGAGAGctCGTTACATGAAGAGACCGGAGCATCACATTCACATTCCCTTTATGGTCATGGAGTGTGCAAATGGCCTGGCTGTGAAAGTATCTGTGAGGACTTTGGACAGTTTTTGAAgcaccTTAACAATGAGCATGCTCTAGACGACCGGAGCACGGCACAGTGCCGGGTCCAGATGCAGGTGGTACAGCAGCTAGAGATACAGCTTTCTAAAGAACGTGAGCGTCTTCAGGCAATGATGGCCCACTTGCACATGCGGCCCTCGGAGCCCAAGCCATCTCCCAAACCGTTAAATCTAGTCTCCAGCATCACCATGTCGAAGAACCTGCCGTCAGCTTCTCCCCCAAACCTGCCCCAGACCCCCACCACCCCCACGGCCCCTGTCACACCGCTGAGCCAGATGCCCCAGGTGCCCTCCGTCCTGAGCCCTGCCAGCGTCCCCAGCATGGGCGCAATGCGCAGACGCCACTCCGACAAATACTCAATGCCCTTGTCCTCagAGATAGCCCCAAACTATGAATTTTATAAGAACGCTGATGTCCGACCACCATTTACGTATGCAACGCTCATCAGGCAGGCTATCATGGATTCGAAAGACATGCAGTTAACGCTTAATGAAATCTACAGCTGGTTCACGCGTACCTTCGCCTACTTCAGACGCAATGCCGCCACTTGGAAGAATGCAGTGCGCCACAACCTGAGTCTGCACAAGTGTTTTGTGCGGGTGGAAAATGTGAAGggggcagtgtggacagtggaTGAGATGGAGTACCAGAAACGCAGATCACAGAAGATAACAGGGAGCCCGACGCTGGTGAAGAACCTGCCTTCCAGTCTGGGTTATGGAGCAGCTCTTAATGCAAGCTTGCAGgcAGCGCTGGCGGAGACGTCCCTGCCGTTGCTGGGTAATCCGGGGTTGATGAACAGCAGTGCGTCAGGACTGATGGGGGGCAGCCCGCCCGGTCTGCTGGGAGGTAGCCCACCCAGCCTCTTACAATGCAGCCTCCACGACGAGCTCAACGGCGCGCTCGAACACCTCGACACTAACGGCCACAGCAGCCCTGGATACTCCCCACAGACACATGTATCTGCAATTCACGTCAAGGAGGAGCCGCTAAACATGGACGATGACGACTGTCCGATGTCATTGGTGACAACGGCCAATCACAGCCCGGAGCTGGAGGAGGATCGAGAGCTGGAGGAGGGCAACCTATCAGAGGACCTGGAGTgatcgtgttttttttttttcatctccaCCCACACTGGCTGGGACTCCGCCCTGACTGGCCCGCCCCTCTAACCACTCCACAAACCACAGAAAGGCAGCAGATGGAAGCGAGGAGTATTTATTTCGAATGAATCCAGGAGACTGGCCCAAAGAGACTATTATCTCAGCCCTTTGAGGACCACATAAGAGCAGGCATGAGATGTCTGCTTTTTAAAAAGACTacacaaagtaaagaaaaaaaaaacacacacacacgcacacacacacaacggaCGAGATTTCCTTCAGATGGCATGGCCACCTCATACACCGTGAACACCAAGACTCATGGACCGAAAcggaaaacaaaaacactcGAGTCTTTCCTGTAGAAAGTTGTTGGCCACATAtactgccaaaaaaaagttttaagtttgTGAATATCCAACCCACAGTAGTCGCTGATGTTAGATACAAATTGCTGGTTCAATTCGAGTTGTTGCTCTGTTATTATTTGCACAGGAGTAGTATCAGAAATTAGTGTCACTGCCTGTATGTTGCTAAAATacgtaaaacaaacaaacagtatttcttttctttcttttcttttttttttaaattctttttaacaaaggctttttttatttcccGTCATGTTTTGCACCACCACCAACTgtaaatgccatttaaaaaaaaaaagtcacaccaATAACAGAACGTAACATGGTATCAAGACTGTTGCAgctgtccaaaaaaaagtaGGTCTCCAGTGTCTCTTATCTCTGTTTGTGCTGAAAAAAGTGAAATGTGATACTGAGTTGAAACGTAAATGTTTGTGTAAGCACCactctgaggaaaaaaaaaaaacaaaaggaaaaaagatgAATTTCTGCATATTCTTCTACTAGTCTCTTTACCTCCTTGTTCTAAAGCTTTGTCTACCTGCAAAGAGTCACAGGCAACAGCTATAAACCAAAGCCAACACTATCAATGGCCAATAGCTTAGACAGAAGCCGCCAGACTCTTTGGTCAGTCTTCTGTGACTTTAACTAGTACAAagagaagcttttttttccGCTAACTACCTTCGAATAACCTCTGGGATTGTGTCATTTAGCCCTGTACAAAGATTTTAAAGAAGGCGATTTTGATGTTTAATTTGATTCCAGTCGGAGAGAGCTCACGCTGGCGCTGTGCAGCGCTGGGTCTGGTCCGCCCTGCGCCAGAGGACAGACCAGAGAGCCTAGGTACACAGACAGGCGCGTGGGCTGGGCTGGACTGGCTAGAAGTGGTAGAGAGCAGCTATAAGTGGATCATGACCAAAACAACCATTTGTGTATCAGTGgaagtgcagaaaaaaatagtgttgtgaaaaaaaaaaacgttttttagtTCTATATATAGATGAATAtacaagttctttttttttgtttttgtttttttttttttaccttcataATTTGTGTCTCCCATCTTCTGGTTGTTTTCTTTGCTAGTGAAACGTGTTGTTCAGTGGAACTGTCTGAAATGTCATGTCTTCTCTCTGTATGGTTTTCTTCTCGGAGCCGTGTTGAAGccgaaaacttaaaaaaaaaaaaacataggaaCCAAACTTTAAGATATCTAGTGaagccaaaaaacaaaaacacttcatGATTTCAAGTTGATATGAAATGATTATGGCTACTgtagccatttaaaaaaaagaggattTCAAAGTTGAGAAGAAACTTTTCTAGGTGACATTTGCTTTGTtctgtaaaagtttttttttattataataaaaataataaattaatacacaGTACAGTACTCCATTGATCTGTGCTGTAGATTACCAGCCATACACTGaagtgccaaaagtcatgggatagtagTATGTAACTTGATCAGGAGACAGCTTGATAGTGATCGAGTCTCGATAGCGGGTGCCAGACGAATGGGATGTTCCATTTTTGAATGAAagtttaacattccttgatttACTGTGTCACATCATAgcaggcattaccacccacagtggacagtgcagtgggtggtaatgaacGTGACCAGCAGCTTCTGGCTGAAGTGTCTAAGTAAAAGGCGACTAAGCTAAACTCGTACCCACATTCAGTTCAGTGCACCGTTTTTTAAGTATCGTAAAAGTGAAACAAGTACCctttcctgtcccatgacatttggcatatcATTGTATGTATTTGAGATATTCCAAAGGTTTCAAAGCAGGATTTGATCATAGCTAATGTCACCTAGAAAAGTAGCTGTTGCTTTAAAAAGGTCATTTCTGTTTTCAGTCAAACCAAAGCTACACAAAATTCTGCCTCCTCTCTTATGGGATAGAGATGCTAGCACACAAAGCTGTCGTAAGGCTCACTCAGTccagcaatttatttattttttacaatattttacaagttttatttcattttttgtattttgatttCGATTCGTTTGGTCTGCTGACTTTCCTGGTCCTCGTTCTGGGTTCTAGTTGACTACCAATGCAGCAAAAACGGTCCGAAATCAGTCTCGGACCTGAAGCGTCAAAAAGTTCCTTCACTTTTTCGCATGTATGGATACAGACTGTGCAGTTGTTGCTCTCCAGTGTTGTGCCAATTCGAGGGGTTGGCTGCTAGCTTCTTAGTGtagatacaaacacacacacacaaatggacGCACACATGCAGACATAGcctacgcacacacacacacacacaccctcacacccCAACTCTCCACACTCCACTAAGATTCTTATACCAGTTCAGCTCAAAGACGAAGCTGGATCCAGGAACAAAGCTTATCCCTTATCCTTTGCTGGAGTCAGCAAATTGACTTGAAGACGACGTTCATAATAATTTTATCACACCAAATATATACTATAGGGccgcagaagaagaagaagaatagtaagaaaaaaaaaa

Function

symbol description
foxp2 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to ethanol. Predicted to be active in nucleus. Is expressed in head; heart tube; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autism spectrum disorder (multiple); communication disorder (multiple); dyslexia; and major depressive disorder. Orthologous to human FOXP2 (forkhead box P2).

NR:

description
PREDICTED: forkhead box protein P2-like isoform X10

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09409 FOXP2_4; forkhead box protein P2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671286.1 True 5552 mRNA 0.47 19 6953016 7094083

Neighbor

gene id symbol gene type direction distance location
LOC103047680 LOC108439417 coding upstream 159149 6782248 ~ 6793867 (+)
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding upstream 181655 6757554 ~ 6771361 (+)
zcrb1 zcrb1 coding upstream 249122 6695590 ~ 6703894 (+)
LOC103021937 LOC108439409 coding upstream 320211 6601383 ~ 6632805 (+)
pus7l NA coding upstream 511442 6428006 ~ 6441574 (+)
mdfic mdfic coding downstream 45768 7139851 ~ 7170640 (+)
arl1 arl1 coding downstream 455002 7549085 ~ 7553250 (+)
slc5a8 slc5a8 coding downstream 509818 7603901 ~ 7612947 (+)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 coding downstream 526731 7620814 ~ 7631378 (+)
ahcyl2 ahcyl2,LOC106609228,LOC107725924 coding downstream 539310 7633393 ~ 7687547 (+)
LOC111192941 NA non-coding upstream 10231 6924178 ~ 6942785 (+)
G62425 NA non-coding upstream 123007 6798340 ~ 6830009 (+)
G62431 NA non-coding upstream 218188 6734481 ~ 6734828 (+)
G62420 NA non-coding upstream 279558 6665395 ~ 6673458 (+)
G62400 NA non-coding upstream 421193 6430591 ~ 6531823 (+)
G62471 NA non-coding downstream 8197 7102280 ~ 7102659 (+)
G62576 NA non-coding downstream 100693 7194776 ~ 7194982 (+)
G62579 NA non-coding downstream 124400 7218483 ~ 7218703 (+)
G62581 NA non-coding downstream 140041 7234124 ~ 7234439 (+)
G62602 NA non-coding downstream 299620 7393703 ~ 7394496 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 97254 6851230 ~ 6855762 (+)
c7h12orf75 NA other upstream 959022 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 985281 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 1187231 5740555 ~ 5765785 (+)
G61575 NA other upstream 3649018 3296546 ~ 3303998 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 1307757 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 1432135 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 2337416 9431499 ~ 9440564 (+)
G63051 NA other downstream 2552496 9646579 ~ 9650087 (+)
G63432 NA other downstream 5373967 12468050 ~ 12468902 (+)

Expression


Co-expression Network