tfec (tfec)


Basic Information

Item Value
gene id tfec
gene name tfec
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7461827 ~ 7533411 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671287.1
GTAGAAACTTCCCTTTGCACTCAGTTCCATAgacagagaaaagaggaaaCAGATAAAGCTTTATATCTGACGTCTTACTGGCAAACGCTGAGACCAGGAGAACCAGGATCCGTCAGTGAGCAGAGACGAGCGCTAGCCTTCAGTCCTATCTATCACCACACACAGtGCACCACAATGTTCCAGACCCACTCCAGCATGCCCGTTTCTGTTATGAGAAATGGAGTGATCCAGCAGActgagctggaagccggcccgTGGCACGCCTCCCATACCTACCCTTCCAGTTCCCCGTATGGCTCCTACCATCAACTCCAGCCTCCAGCCTGGACACAACCCTACCCCACCTGGAAGGTTCAGAACCACCTGGAGAACTCTAAGTACCACATCCACCAAGCCCAAGCCCAGCAGGTCAAGCAGTACCTCACCCTAGGCAGCAAGCTTGCCAGCCAGGCCCACCCGCACCCTGGCCAGGCCCTGGGCAGCATGCCGGTCATGCGCAACGGACACATGCCGCCCGTCAGCGATAGCAGCACACCCGGCAGCCCCGTCACCCTGCTAACACTCGCCAACAGCCACGACAGTGAGtttccGATGGACGAGGTTATTGATGATCTCATTAGCCTTGAGTCCAGTGGCTTGGATTGTATGGAGCCTGGCATCATAATGCAAAAACAACGTAATAatATGTCTCTGAACAGTGGCATGCTGGACATGTACGGCGGTGACCAAGGTATGACCGCCCCTCATGGTGGACTGACACCCCCCTCATGCCCCACAAAGCTCTCTGTTAAAAGGGAAGTCACAGAACACGACACAAGAGTTTTGGCAAAGGAGAGACAGAAGAAAGACAACCACAATCTGATTGAAAGACGACGGCGATACAACATCAACTACAGAATCAAGGAGCTTGGAACTCTCATACCAAAGTCCAACGACCCTGATATGCGCTGGAACAAAGGGACCATCCTCAAGGCCTCGGTAGAGTACATTAAGTGGCTACAGAAGGAGCAGCAGCACGCCCGCGAGCTGGAGAGCCGACAGAAGAAGCTGGAGCAGGCCAACAGGAGACTGCTGCTGAGAATCCAGGAGCTGGAGATCCAGGCTCGGGCTCATGGCCTGCCGAGTGCCCTGGGGGCTGTGGAGCTCTCCTCTCATCTCCtaaaacagcaacagcagcaacaacaacaacaacaacagcagcagcaggtggcCCAAACTGTTCCAGGACCACAGGCCCCTCAGGCCTCTCAGCCTGCCTTGTACCCTCAGGAGGATCTCAGCGCACCCGAGTACCTCCAGAGGAATCCCCTGCCTGCGGTCATCTCCCTGGCAGGAGGCGGAGGAGCCGCTGAGCAGGTCGACGCCTCCACCACGTTCTCGGACCCCCTCTCGCACTTCACGGACTTCTTCAGTGCCACGCTGAAAGAGGAGCACCGCCTTGATGAGATCCTCATGGAGGACGCGCTCTCGCCGTTCGGCGCTGACCCCCTGCTGTCCGCCACCTCCCCCGCCGCCTCCAAAGAGAGCAGCCGCAGGAGCAGCTTCAGTACAGACGACAACGATGACCTCTAACCGGCCAGCCTCTGACCTCTGACTGACTGAGGTCGACCTCTGCGGTCGGGCCGCTCCACTGCTCCCTCTAGaggagaaaaactgaaaaacggGCACTTGCACActtgcgtatgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtaactgaaCTCCCGCTTTAAGCCCACATTGGAATACAGGGGGTCTTGTCTGGTCCTGGAGATCTTCAAGCTTCGAGAGTTTAGTTGTGAAAGGCTTAGCCCTTCTCTGATGGcctttttaaaatttacttataaAAAGGGTTATGGTTGTTATTTAGCTTACTTGATACAAAGATGTATatacattctgtaaaacaatatTTCCCAGTTAAAAAGAaagccaaaagttttttttatgttaaatcataaaaaaagcaGTAAATTAAGATTTGaatttcatatttaatatttaatgcacAGAATATTAACAGCCTCCCTTTCATTTATATAGATGGCCTAATCATCTTAGTGTATAGCTTAGTGGATagctgctttttaaaattatttaaattgaataaataatacaaataaatccaAACAGTAATGTGTGGATTATTGAGGAAAGTAAGTAAACCAAAAGACACAGGAAAAACCCTAATTTATACATTTAGAAAACGTATCATTATAAGAAATGTGTAACTAACCAAAGCAAAGTGTTAGCCCAGGGCCGGCGTGTGAGCTTAAGGGTTAAACTAAACAGAATGTTAGAGATCCAGGCCCAGAGCTGGCTGATCCTGGACTACACAGACGAGGAGTGAGACTTTCCTCCACGTCTTGCACCAATGTTGAATCAGACACATCAAAAGAAAAAGGGAGACTGACTGAAGTGCTGATGCTTATCTACTGTCCAACCAAACTTACACTTACACTTTCATAACACTGGTCACTCACATCCACTGGAACTCAAAAACTCTCTACCTGTTCCTGAACTGTAACATAATGGCATTGTATATTTGGACCAGTAACAACAGGAGAAGACGAtagagaagatgaagaagaagaaggggaGAGAAGAGGAGTGTTATTTCTCTCATACTTTATCCAAAAACTGGTTAACTTTATAACCACTGTAAAGAGGAAGCAAtgcaaatgtaattgtaattactAGCCAAGAAAAACCTAACAtgcctttttattgtttttatttttattgttctgttgtttataaagtatttttaaaggaAGATatctgtttatgtatttatatgtctTAATCTCTGTATTGTTACAAGAAAATTTGTAGACAATCTAACATGTTTCATTTTTATAACTTTGGGGGTGGGGGAAATACATTAAACCCCTTTTTGA

Function

symbol description
tfec Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within definitive hemopoiesis; hematopoietic stem cell homeostasis; and hematopoietic stem cell proliferation. Predicted to be active in nucleus. Is expressed in several structures, including extension; eye; immature eye; intermediate cell mass of mesoderm; and neural crest. Orthologous to human TFEC (transcription factor EC).

NR:

description
PREDICTED: transcription factor EC isoform X5

GO: NA

KEGG:

id description
K15591 TFEC; transcription factor EC

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671287.1 True 2911 mRNA 0.47 10 7461827 7533411

Neighbor

gene id symbol gene type direction distance location
LOC103043330 NA coding downstream 506602 6931163 ~ 6955225 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding downstream 606085 6851168 ~ 6855742 (-)
LOC111192905 NA coding downstream 725253 6735157 ~ 6736574 (-)
LOC111192868 NA coding downstream 738297 6722102 ~ 6723530 (-)
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding downstream 1317619 6139962 ~ 6144208 (-)
utp20 utp20,LOC107583990,LOC107576235,LOC107735256 coding upstream 19854 7553265 ~ 7602288 (-)
LOC103047295 LOC108425379,LOC108280009 coding upstream 237325 7770736 ~ 7801165 (-)
LOC111192943 NA coding upstream 400739 7934150 ~ 7946647 (-)
LOC103022071 ntf3 coding upstream 424619 7958030 ~ 7989801 (-)
LOC103036167 rassf3,LOC106576047 coding upstream 641615 8175026 ~ 8214074 (-)
G62606 NA non-coding downstream 57280 7403799 ~ 7404547 (-)
LOC111192869 NA non-coding downstream 90162 7344924 ~ 7371665 (-)
G62592 NA non-coding downstream 118328 7343265 ~ 7343499 (-)
G62584 NA non-coding downstream 221528 7237191 ~ 7240299 (-)
G62582 NA non-coding downstream 227388 7234203 ~ 7234439 (-)
G62624 NA non-coding upstream 11847 7545258 ~ 7545751 (-)
G62645 arl1 non-coding upstream 15718 7549129 ~ 7553237 (-)
G62659 NA non-coding upstream 83546 7616957 ~ 7617395 (-)
G62661 tmem209,LOC107583965,LOC107725925,LOC107658886 non-coding upstream 87515 7620926 ~ 7624045 (-)
G62732 NA non-coding upstream 277142 7810553 ~ 7810782 (-)
LOC111192940 NA other downstream 602157 6787342 ~ 6859670 (-)
G62484 NA other downstream 723879 6671610 ~ 6737948 (-)
LOC111192938 NA other downstream 728702 6727874 ~ 6733125 (-)
pphln1 pphln1,LOC108279830 other downstream 766438 6633010 ~ 6695389 (-)
G62377 NA other downstream 1086847 6374469 ~ 6374980 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other upstream 84124 7617535 ~ 7619432 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 633074 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 2085250 9618661 ~ 9622788 (-)
G63217 NA other upstream 2781388 10314799 ~ 10411231 (-)
G63516 NA other upstream 4787144 12320555 ~ 12380556 (-)

Expression


Co-expression Network