LOC111192943


Basic Information

Item Value
gene id LOC111192943
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7934150 ~ 7946647 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671294.1
ATAATAACAGTGGGATAGCTCAAGAGaacacagaaaatacagaaaacatcCATCTGAGCGACTTTTGTTCAGCGAGTCTCTGCTTTTAAGGATGGCCCATATAAAGAGGTTTGCTGGAATTCCCATGTCTAAGTGTATGAGAGAAATGTGCAGAGAGGAGGACTACATGTTCCTACAGGACCCGAGAGACCAGGGCAAGACTCCTGAGGGCACCACGCTTCAGGACACTGAGTGGCAGCAAAAGCGGGAGGAAAGGATTCAGCGGAGGGTGGAGAGAGAGCAGCAAGAGCAGGAAAGGCAGCGGCAGCTGGAGGAGCAGCAGAGGaagaaggaggaggagtggaggagtcaTGTGGCGAAACTAGCATCTGAACGCGAGTCTCTACGTGACAGATTACACAGGCTACGTGAATTCAGGGACTTTCAGAAAAAGGTGCTGATACAGGACCTGGGCCTGGATCCAGACTCATCCAATGAGAAGCTGACAAAAATCCTTAGGAGATTGTAATGGTGGTTATTTGAAgagacagaaacactgaatgtaaaatatgctggaggaaaacctttaaaatatgAGATATGTAGTGAACAGCTTTATAGTTAAACATTAAtctattatattttactgtgaAGAAAATCAACGTTTTCAACTTTGCAACACCTGTTTGCCATTCAATGAGATTTTATTGCTGCTTAAAAAATAACACAGTATATACACTGACACGCGAGACTGTAACTAGTGTATCCCTTAATTTTGTCCATGACCATGTCCCATTTTCTTATTAACACCGTACTGGTCTGTGGGATATCTGTGTAGTGgatctcctgcattaaatgtggatgtgatttcatGCCAGAGTCTGTATGTCCCATTCATCTGGCACCATGAAACCACTGGCATTCAACCAGTGTTCAGCTttattcacaagataacaactCACAGTTTAAACTAGTGTCTGCGTTCCCAAGCCATATTATAAAGTAACACATCATGATCAATTTTCATTCTGCTATCTCATGACTTATAAGTGGcataaatgcatattaatttatttaattctgtaATGCATGATGGTGTTATATACTTAAACTTAACTAAAACTTAATTTAACACAATAGTTAATTGTTAGCAGATAATTGCTCATTTATTAACATATACTACTGATGTAGGTGTAAAGCTTGTGTTTGTAAAACTGACCCATAAGAATGTATTTCACAGGAACACAATAACGCGTTTTGGGACCAAGTCCTTTAGTAATGTTTGCAGTGTAGTAGGTTTCAGTTGAactgtatgttttgttttgaacatgctgtaaaatatagattgaagattttgttttaacacaaataaataaagtctgTTGTACGTAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671294.1 True 1374 mRNA 0.39 6 7934150 7946647

Neighbor

gene id symbol gene type direction distance location
LOC103047295 LOC108425379,LOC108280009 coding downstream 132985 7770736 ~ 7801165 (-)
utp20 utp20,LOC107583990,LOC107576235,LOC107735256 coding downstream 331862 7553265 ~ 7602288 (-)
tfec tfec coding downstream 400739 7461827 ~ 7533411 (-)
LOC103043330 NA coding downstream 978925 6931163 ~ 6955225 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding downstream 1078408 6851168 ~ 6855742 (-)
LOC103022071 ntf3 coding upstream 11383 7958030 ~ 7989801 (-)
LOC103036167 rassf3,LOC106576047 coding upstream 228379 8175026 ~ 8214074 (-)
LOC103043012 NA coding upstream 278004 8224651 ~ 8252909 (-)
LOC111192944 NA coding upstream 307198 8253845 ~ 8263749 (-)
dgki dgki,LOC108425370 coding upstream 322993 8269640 ~ 8361308 (-)
G62732 NA non-coding downstream 123368 7810553 ~ 7810782 (-)
G62661 tmem209,LOC107583965,LOC107725925,LOC107658886 non-coding downstream 310105 7620926 ~ 7624045 (-)
G62659 NA non-coding downstream 316755 7616957 ~ 7617395 (-)
G62645 arl1 non-coding downstream 380913 7549129 ~ 7553237 (-)
G62624 NA non-coding downstream 388399 7545258 ~ 7545751 (-)
G62748 NA non-coding upstream 3188 7949835 ~ 7951434 (-)
G62821 NA non-coding upstream 331038 8277685 ~ 8279994 (-)
G62832 NA non-coding upstream 385861 8332508 ~ 8333323 (-)
G62858 NA non-coding upstream 487068 8433715 ~ 8434396 (-)
G62907 NA non-coding upstream 700238 8646885 ~ 8647296 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 314718 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 1074480 6787342 ~ 6859670 (-)
G62484 NA other downstream 1196202 6671610 ~ 6737948 (-)
LOC111192938 NA other downstream 1201025 6727874 ~ 6733125 (-)
pphln1 pphln1,LOC108279830 other downstream 1238761 6633010 ~ 6695389 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 219838 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 1672014 9618661 ~ 9622788 (-)
G63217 NA other upstream 2368152 10314799 ~ 10411231 (-)
G63516 NA other upstream 4373908 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 4418821 12365468 ~ 12500663 (-)

Expression


Co-expression Network