LOC103022071 (ntf3)


Basic Information

Item Value
gene id LOC103022071
gene name ntf3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7958030 ~ 7989801 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671295.1
gtgtgtgtgacagagagagagtgggagctCCGCGCGCTCTACTCGCTCCATAAGCCTGTTGAGGCAGCggcagtagtagcagcagctcGTGCGCACGGTGCGCTCTCGGACGCACGGACTTTTTTTCCACACGGATAAAGGATAAAAAGGCGCTCGGGATAAAACACGCAGGAATAACACGCGCACACACGTCACCGGATCTTTCCTTCACGAGCTCCTTCATGTCGGGACTGCTGCACTCCCCCCACCGATGCTATGGTTACCTTCATTACGATCTTACAGGTGAATCTAGTGATGTCCATCCTGCTGTACGTGATGTTCCTCGCGTACCTCTACGGCATCTCGGCCACCATGGCCAACAACAGGCAGCGGCCCACGCAGGACCCCATCAACACGCTGATATTAAAGCTTCTGCAGGCTGACATCGTCCGTGCTCGCCAGCGGCAAGATGAGGGGCCTCCAGAGGCGGCGCTGCCCACCGCTCCTTCGGAGACAGAGTACCCGCAGAGACCCACGGCCAAGAAGCCCGTCGCCGATGAGCTTCTCCGCCAGCACAAGCGCTACAGCTCACCTCGCGTGCTACTGAGCGAGCGGCCGCCCCTGCAGCCCCCGCCTCTTTACCTCACCGACGACTTCGTGGGCAGCGCAGAGGGCGGCAACAAAACGCGGCAGAAGCGCTACGGGCACAAGAGCTACCGAGGAGAGTTCTCAGTGTGCGAGAGTGAGAGTCGCTGGGTGACGGACAAGAGGTCTGCAGTGGACACGCACGGCTTTGACGTCTCAGTGCTTACTGAAATCAAAACCATCAAGTCGACGGTGAAGCAGTACTTTTACGAGACGAGCTGCAAGCACAACAGGCCCTTCAAGAGTGGCTGCCAGGGCATCGACGACAAGCACTGGAACTCACAGTGCAAAACGTCGCAGACGTTCGTACGCGCCCTCACCGAGTACGAAAACATGCAGCGCTGGCGCTGGATACGGATAGACACCGCATGCGTCTGCGCACTTTCGCGCAAACGACGCAGGACGTAAAAGAAATAAGAACA

Function

symbol description
ntf3 Predicted to enable growth factor activity and nerve growth factor receptor binding activity. Acts upstream of or within negative regulation of programmed cell death and peripheral nervous system development. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; dendrite; and synaptic vesicle. Is expressed in several structures, including brain; cardiovascular system; otic placode; pancreas primordium; and retina. Human ortholog(s) of this gene implicated in Alzheimer's disease and asthma. Orthologous to human NTF3 (neurotrophin 3).

NR:

description
PREDICTED: neurotrophin-3 isoform X1

GO:

id name namespace
GO:0043069 negative regulation of programmed cell death biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K04356 NTF3; neurotrophin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671295.1 True 1046 mRNA 0.58 3 7958030 7989801

Neighbor

gene id symbol gene type direction distance location
LOC111192943 NA coding downstream 11383 7934150 ~ 7946647 (-)
LOC103047295 LOC108425379,LOC108280009 coding downstream 156865 7770736 ~ 7801165 (-)
utp20 utp20,LOC107583990,LOC107576235,LOC107735256 coding downstream 355742 7553265 ~ 7602288 (-)
tfec tfec coding downstream 424619 7461827 ~ 7533411 (-)
LOC103043330 NA coding downstream 1002805 6931163 ~ 6955225 (-)
LOC103036167 rassf3,LOC106576047 coding upstream 185225 8175026 ~ 8214074 (-)
LOC103043012 NA coding upstream 234850 8224651 ~ 8252909 (-)
LOC111192944 NA coding upstream 264044 8253845 ~ 8263749 (-)
dgki dgki,LOC108425370 coding upstream 279839 8269640 ~ 8361308 (-)
LOC103036771 LOC103036771,LOC108425308 coding upstream 391696 8381497 ~ 8389275 (-)
G62748 NA non-coding downstream 6596 7949835 ~ 7951434 (-)
G62732 NA non-coding downstream 147248 7810553 ~ 7810782 (-)
G62661 tmem209,LOC107583965,LOC107725925,LOC107658886 non-coding downstream 333985 7620926 ~ 7624045 (-)
G62659 NA non-coding downstream 340635 7616957 ~ 7617395 (-)
G62645 arl1 non-coding downstream 404793 7549129 ~ 7553237 (-)
G62821 NA non-coding upstream 287884 8277685 ~ 8279994 (-)
G62832 NA non-coding upstream 342707 8332508 ~ 8333323 (-)
G62858 NA non-coding upstream 443914 8433715 ~ 8434396 (-)
G62907 NA non-coding upstream 657084 8646885 ~ 8647296 (-)
G62950 NA non-coding upstream 1030688 9020489 ~ 9020985 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 338598 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 1098360 6787342 ~ 6859670 (-)
G62484 NA other downstream 1220082 6671610 ~ 6737948 (-)
LOC111192938 NA other downstream 1224905 6727874 ~ 6733125 (-)
pphln1 pphln1,LOC108279830 other downstream 1262641 6633010 ~ 6695389 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 176684 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 1628860 9618661 ~ 9622788 (-)
G63217 NA other upstream 2324998 10314799 ~ 10411231 (-)
G63516 NA other upstream 4330754 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 4375667 12365468 ~ 12500663 (-)

Expression


Co-expression Network