LOC111192944



Basic Information


Item Value
gene id LOC111192944
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8253845 ~ 8263749 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022671298.1
TCACTGAACTCCCACAACACTTGAAATGAAGCTACATTTAAAGACCAGAGTCTCCGGTCTGCTGTGGAGTTTAGAGGAGCGGCAGCGGGAGAGAGAATGGCGGATCTCCGTGTGGATATTCAGACTGTACAAGAGGCCAATGGACACACTCAGACAGTTACTGAAGACAGCTTTGAGTACAGACTCCTTCAAACCTACACAAAGAAGAAAGGACCCACTTACACGCCCCTATTACAAAGCAATGGGACAACAGAAAACAAGCCTGCATCACCCGTGCCATCAGCTGAGTGCAACAAAGCAAAGAAAAATAGAAGGAAAATAATtgcttttaataagcttttagCTTGCATTCGGCCACAGAAGGAACACAGTATTCCTGTGATTAGTAACATCTCCAGAAGTCGGGCATCATCATTTGAGGctggCCCAGACACGGAAGTAGACGACATTGTCAACAAGTTGACCAAGATCTCTGATTCTGTGCATTTCCAGCCTTCTGATCTTGAAACTGACAGTGATGATGTAGTTGATAAAATAGTGGAGATCCTCAGAGAGCATGGAGACAAACTCGATGAGGAGATAAAAAACAACCGTGAGTTGATGCAGCAGCTGCAGGGAATTCTCTCGTACAGTTTCTTTAAGAAACTGACCAGGTTCTTTATTCAGAGAGTAACCCCAGAAGAGGCACCTCCTGTAAAACACCCAAAGGAAGCCCACATCGCTCTTATCTGTGAACTCACCAGCCGTCTGACAGTCATGGACCGCCACCCAATGAACAGAGTGCTGGGATTCGGTGCCAAATACCTCCAGGAAAATTACACTGCCTGGGTCAACCAACAGGGGGGCTATGGTAAAGTTTTTAGCTCAGACGATGAGAAGGAGGACGAGTGAACCAGAAGAACTGTGGACTTTCACTCTCTGCCTGTGATTCATTCAAGCTTTAATTTCATCAGCAAGTCTTAAAATTAATCTCAGGGATTACGTCACTTTAGAAAATCAATGTATGCCTGTTTATACTTCTTTGAAGAGCTGCTGGTATCATTATGTGTCAAATATGTTGCAGGTTTGCACACaaattaaactatatttttttttttttgcaaattacaTACACCAAGTTCTGTCTTCAgggtttttttaatcataggACAAAAATTGTGTTGCTGAATTATATTCCATTATTGTGCAGCCATATGATGTTTTAAACAAGTCAAACAATTTAGACTGTGTACATATAAAGCTTTACACAAAAAGAGTATGTTTGgtacattttactttacaacATACTGAATatgatttatgtttattttaacaacttttgccaaaaaaaaggttttaaaaaactattttggtCTGTCTTTTTATTTAGGTGTTTTCAGGGTAGTGAATACTACTTATTGTAATACtcatacatattaatattgtacagaagaaggtggtttgtgtgtgtgcttattcAAATCTGTCTGATTATATGAAAGTATGTAATGtgtcatttttaatttacaataaatgtaattttacattaaaca

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022671298.1 True 1532 mRNA 0.39 6 8253845 8263749

Neighbor


gene id symbol gene type direction distance location
LOC103043012 NA coding downstream 936 8224651 ~ 8252909 (-)
LOC103036167 rassf3,LOC106576047 coding downstream 39771 8175026 ~ 8214074 (-)
LOC103022071 ntf3 coding downstream 264044 7958030 ~ 7989801 (-)
LOC111192943 NA coding downstream 307198 7934150 ~ 7946647 (-)
LOC103047295 LOC108425379,LOC108280009 coding downstream 452680 7770736 ~ 7801165 (-)
dgki dgki,LOC108425370 coding upstream 5891 8269640 ~ 8361308 (-)
LOC103036771 LOC103036771,LOC108425308 coding upstream 117748 8381497 ~ 8389275 (-)
cct2 cct2,tcpb coding upstream 126031 8389780 ~ 8400903 (-)
terf2 NA coding upstream 152113 8415862 ~ 8444288 (-)
arfgap3 arfgap3,LOC108279714 coding upstream 183561 8447310 ~ 8462554 (-)
G62748 NA non-coding downstream 302411 7949835 ~ 7951434 (-)
G62732 NA non-coding downstream 443063 7810553 ~ 7810782 (-)
G62661 tmem209,LOC107583965,LOC107725925,LOC107658886 non-coding downstream 629800 7620926 ~ 7624045 (-)
G62659 NA non-coding downstream 636450 7616957 ~ 7617395 (-)
G62645 arl1 non-coding downstream 700608 7549129 ~ 7553237 (-)
G62821 NA non-coding upstream 13936 8277685 ~ 8279994 (-)
G62832 NA non-coding upstream 68759 8332508 ~ 8333323 (-)
G62858 NA non-coding upstream 169966 8433715 ~ 8434396 (-)
G62907 NA non-coding upstream 383136 8646885 ~ 8647296 (-)
G62950 NA non-coding upstream 756740 9020489 ~ 9020985 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 80029 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 634413 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 1394175 6787342 ~ 6859670 (-)
G62484 NA other downstream 1515897 6671610 ~ 6737948 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 1354912 9618661 ~ 9622788 (-)
G63217 NA other upstream 2051050 10314799 ~ 10411231 (-)
G63516 NA other upstream 4056806 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 4101719 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 4542222 12805971 ~ 13027498 (-)

Expression



Co-expression Network