sapcd1


Basic Information

Item Value
gene id sapcd1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8567297 ~ 8572672 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671305.1
cacacacacacacacactcctcatacacacacagtgtaagCTGCTCTTCCTGTCATActgctctttcactctctctgtatttgcttcttctgttcttctgttctgtgtgtatttatggcGGGTGATGGCTCCTACACTGTGGTTATCGTTCCACTACAGAACAGTCTGTACAGCCTGGACGCACTGCGATTCTTCCACTGGCTTAAGCACCTGAGGGCTCtggagagggagaaagacagTCTATGGATGGGGCTGCAGGTTGTGGAACAGACTCGCCTCTGGTATCAACATCACCTGGAGAACGTCTCAGAAAGGCATTCCAGAATCTGCTCAAAAGATCAGGACAAGGAGgaaGGCTGGACGTGTGCTCTTCGTTCTCGAGTGCAGCGTGTGAACGGCAGTCTGGGCAGTTTGCTGAGTGATGTGGGTATGTGGACTGGTTTTGCTCCTGATGAGAGAGGGGGCTCAGACTGGGAGCTCCGCTGGAACAACGCCACTCTCACACAgGAGGTGAACAAAAGAAATCATCGGATCTCACTGCTGGAGCTACAGAAAGAGAGTCTCGCTCAAAAGCACTGTGGCATGTACTACATCTGACTAAGCCTTTCTagtaaacacatacacacacacacacacacactgaaaaatcAATATTCCATCACTACACCAGCTAAATTATGTAAAGCCTGAGATTGCACATAAGAGTCTTACTTTGATTTCTTTGACGTGCCGGCACAGAATAGGACTGCAGCCTATTCACTGGAGCTAGTGGACAGTGAAACGCTTCTGAAAACTGAACCAAAGCTATGTAATGTTTTATCTGCTTATTTCACTTTATTCCGTTTAtttacatccattcctgcatttcaggcctgtaaCACACTCCTAAAAAGTTGAAACGGGGCTAGTAATGAGGTTTAAAAACTTAATAATGATGGGATTTTAAATAGCTGATTGTGTCATGATTTTGTACATGATTTTAAGGAGCAAACCAGGGAATATAATCTTTAATTTGATACCaagtggtaaatgctttactgttGCAACTTTTTtgtggaatgtgttgcagacctgaaatgcaggaaaggatataataaataaatataataaatacaactgaaaaaaaaaagtttgagcaGACAAAACAGATGAAAAATCTTGGGTTCATATATTCTGTTATTACCTCAAAGTAATAAGTCaaagtttttgcatttttaataatGTCTCAACTTTCTTCTGATTTATGGTTGTAAATGTTAAAGTATAATGCTATTGATGTTGAATGCACACATTTTGAAAAGTGTAAATAAGAGGGATTTAttatataaagatgttttattaatatttgtttggTTACTGAATGTGAAATGCCCCAATAATCCTACAACACTAAGAAATGATAAGCTAAATCTCTTTagttgtgcgtgtgtgtagaAGCTGTTGCTATACAAAACTACACAAGCCAACCACATATATTTAGAGGTGTAACGTaactaaatacaaattaaaaattaagtaaattactTTACTTAAgcagaaatgttggttatctgtactttactggagtGATTATTTTGACttctacattttcacacaattatctgaactttctgctccttaaaatattaaaaatacacttgttactctta

Function

NR:

description
PREDICTED: suppressor APC domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671305.1 True 1649 mRNA 0.39 4 8567297 8572672

Neighbor

gene id symbol gene type direction distance location
LOC103044524 NA coding upstream 42260 8517980 ~ 8525037 (+)
LOC107197608 LOC107197608,LOC108425361 coding upstream 50763 8510515 ~ 8516534 (+)
ckap4 NA coding upstream 135307 8428552 ~ 8431990 (+)
LOC103021322 LOC108425378,LOC108279462 coding upstream 646073 7820355 ~ 7921224 (+)
smkr1 NA coding upstream 797054 7766846 ~ 7770243 (+)
LOC103045143 LOC108425356,LOC108425352,LOC108280014,LOC103363517,LOC107719870,LOC104927640,LOC107699203 coding downstream 216683 8789355 ~ 8882696 (+)
LOC103042395 LOC108425352,LOC108425356,LOC103363517,LOC107719870,LOC107699203,LOC104927640 coding downstream 483751 9056423 ~ 9168847 (+)
kiaa0930 kiaa0930,zgc:172139,LOC102798964 coding downstream 623460 9196132 ~ 9246664 (+)
phf21b phf21b coding downstream 721148 9293820 ~ 9423281 (+)
LOC103035489 LOC108425317,LOC107562148,LOC107741714,LOC107687569 coding downstream 1045994 9618666 ~ 9639280 (+)
G62873 NA non-coding upstream 41530 8525568 ~ 8525767 (+)
G62805 pacsin2,LOC103038884,LOC108279716 non-coding upstream 71008 8464127 ~ 8496289 (+)
G62810 arfgap3 non-coding upstream 111386 8451492 ~ 8455911 (+)
G62807 NA non-coding upstream 132915 8433736 ~ 8434382 (+)
LOC107197604 NA non-coding upstream 192602 8370763 ~ 8374695 (+)
G62902 NA non-coding downstream 41546 8614218 ~ 8614523 (+)
G62945 NA non-coding downstream 384079 8956751 ~ 8956951 (+)
G62947 NA non-coding downstream 423996 8996668 ~ 8998907 (+)
G62949 NA non-coding downstream 441027 9013699 ~ 9013925 (+)
G62951 NA non-coding downstream 460131 9032803 ~ 9033574 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 27174 8526218 ~ 8540123 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 152258 8401840 ~ 8415039 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 1711535 6851230 ~ 6855762 (+)
c7h12orf75 NA other upstream 2573303 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 2599562 5782091 ~ 5967735 (+)
LOC111192948 NA other downstream 858827 9431499 ~ 9440564 (+)
G63051 NA other downstream 1073907 9646579 ~ 9650087 (+)
G63432 NA other downstream 3895378 12468050 ~ 12468902 (+)
LOC111192955 NA other downstream 4583554 13156226 ~ 13161367 (+)
gata3 gata3,LOC107555822 other downstream 5594557 14167229 ~ 14242234 (+)

Expression


Co-expression Network