LOC103045460


Basic Information

Item Value
gene id LOC103045460
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9170991 ~ 9192565 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671308.1
ttttttttccaatctagattctgaacagtgaaagtACAAGCCGTGAGACATCTCAACACACTAGTGATTTTGTGTGGCAATCCAAGGAGGCGGTCAGCTTTTTCAGGCGCTATTGTTTTAATGAAGaaattttatgttgttttgttAAAGTGTACGATTTTTGCCTGTGTTCAGTAAAAACCGAAGCTGGAGagaatctgaaataaaattcaAAGGTATGTCTTACACAGGTGTTGTCCACTCCGTCAGgcagaaaaagaagaggaacgCGCATTCTGGACATCAGCTGATGCATGGAATAGGCCTGCATGCATGGCAGCAAGCCAATTTAGCAGAGCTCTTTGAGTCCCTTAAAAATGTAGTATGTCCTTCGACCCAGAAAACCCCCGCCAAGTGGAAGATCCTGGATCATGCCAAAGGATTTCTGCTTGAGAAAGAAGCGTATCTTAGTAAACTTCTTGAACTGAAAGaaaTCTTCCTGCAGGATGATGAAGGACCTAAGAGTTTGGAGGAGGTGCGGGAAAAGTATAGGAGACTGTATTCCAAAAGCTTTGTGTGCACCAGAAAACGCATCCATACAGCTCATGTGCCTGATGTGGATAAGGGACCAGGCAGCAGTGAGGAAGACTTTGCTGATGAGGGAATGGATGCAGCACTGCAGCCCCAGGGTTCGGGACTGTCTGTTTCAAGCATCCAGGAGTTTGAGGGataTCTCTTTTTCTACAGGCAGACTCTGGACCACTTACTGTGCACCGGAGTCCTCGCCCCAGACCAGCCAGTCCTGCCAGTGGTGTCAGAGGCCATCTCAGGCCTGTGGAAGAGCATGCCTCCAGAGCAAAGGGCTGAGGTCCAGCAGTGCACGCTGACGGAAAGCTGCATCACTTGGCTTGGCCCTGCTGATGACACCCCCTGCAGCTCTCTGAACTCATCCCAGCTCACCAGCTTAAACACATCTGGAACTTCTGCCCTGGAGGAGGACCTAATCCAGGATGCCTATGATGTGGTACAGAGAGACATGGATGCCACTACTGTGAACAGtcccacactgctgcctCCACGGAGTGGCGACTGCGAGAGGCTGAGAGAGACCTACAAGGACATTACAAGCTTCATTAGAAGCCACATGTCTGAGGAACAGGAGCTCACCCAGGACATGTGCTTAACTGATGACTATGAAGAGCTCTTCCTGAGGTGTTCTGAAAGCTTTGATGAGGATATTTAATCTCTTCACCGGCCTCTGCAGCTGTCGCTTTTCATCCTGTTacaagtttttgtttttaaggtaCAGTTCAGTGAGTTGTAGATAAAATGTGTTGCTCTTTTAAACTCATAAAGGTGTTCaggtatgttttcagttttttttttttaatggtgttCCTGAAAACCGCTTCTCTATCGCGACCTTCGCTTGTGTTCTCTTGCTAGTCAGgtgttttaactaaataaaaaatgaataaataaagccaGACTAAAGTGAGCAGTCA
>XM_022671309.1
ccaacaagacaatgaccctaagcacgcAGCTACACAGAATTACTACGTATGTCTTACACAGGTGTTGTCCACTCCGTCAGgcagaaaaagaagaggaacgCGCATTCTGGACATCAGCTGATGCATGGAATAGGCCTGCATGCATGGCAGCAAGCCAATTTAGCAGAGCTCTTTGAGTCCCTTAAAAATGTAGTATGTCCTTCGACCCAGAAAACCCCCGCCAAGTGGAAGATCCTGGATCATGCCAAAGGATTTCTGCTTGAGAAAGAAGCGTATCTTAGTAAACTTCTTGAACTGAAAGaaaTCTTCCTGCAGGATGATGAAGGACCTAAGAGTTTGGAGGAGGTGCGGGAAAAGTATAGGAGACTGTATTCCAAAAGCTTTGTGTGCACCAGAAAACGCATCCATACAGCTCATGTGCCTGATGTGGATAAGGGACCAGGCAGCAGTGAGGAAGACTTTGCTGATGAGGGAATGGATGCAGCACTGCAGCCCCAGGGTTCGGGACTGTCTGTTTCAAGCATCCAGGAGTTTGAGGGataTCTCTTTTTCTACAGGCAGACTCTGGACCACTTACTGTGCACCGGAGTCCTCGCCCCAGACCAGCCAGTCCTGCCAGTGGTGTCAGAGGCCATCTCAGGCCTGTGGAAGAGCATGCCTCCAGAGCAAAGGGCTGAGGTCCAGCAGTGCACGCTGACGGAAAGCTGCATCACTTGGCTTGGCCCTGCTGATGACACCCCCTGCAGCTCTCTGAACTCATCCCAGCTCACCAGCTTAAACACATCTGGAACTTCTGCCCTGGAGGAGGACCTAATCCAGGATGCCTATGATGTGGTACAGAGAGACATGGATGCCACTACTGTGAACAGtcccacactgctgcctCCACGGAGTGGCGACTGCGAGAGGCTGAGAGAGACCTACAAGGACATTACAAGCTTCATTAGAAGCCACATGTCTGAGGAACAGGAGCTCACCCAGGACATGTGCTTAACTGATGACTATGAAGAGCTCTTCCTGAGGTGTTCTGAAAGCTTTGATGAGGATATTTAATCTCTTCACCGGCCTCTGCAGCTGTCGCTTTTCATCCTGTTacaagtttttgtttttaaggtaCAGTTCAGTGAGTTGTAGATAAAATGTGTTGCTCTTTTAAACTCATAAAGGTGTTCaggtatgttttcagttttttttttttaatggtgttCCTGAAAACCGCTTCTCTATCGCGACCTTCGCTTGTGTTCTCTTGCTAGTCAGgtgttttaactaaataaaaaatgaataaataaagccaGACTAAAGTGAGCAGTCA
>XM_022671310.1
aaaaaaatatttttttttccaatctagattctgaacagtgaaagtACAAGCCGTGAGACATCTCAACACACTAGTGATTTTGTGTGGCAATCCAAGGAGGCGGTCAGCTTTTTCAGGCGCTATTGTTTTAATGAAGaaattttatgttgttttgttAAAGTGTACGATTTTTGCCTGTGTTCAGTAAAAACCGAAGCTGGAGagaatctgaaataaaattcaAAGGTATGTCTTACACAGGTGTTGTCCACTCCGTCAGgcagaaaaagaagaggaacgCGCATTCTGGACATCAGCTGATGCATGGAATAGGCCTGCATGCATGGCAGCAAGCCAATTTAGCAGAGCTCTTTGAGTCCCTTAAAAATGTAGTATGTCCTTCGACCCAGAAAACCCCCGCCAAGTGGAAGATCCTGGATCATGCCAAAGGATTTCTGCTTGAGAAAGAAGCGTATCTTAGTAAACTTCTTGAACTGAAAGaaaTCTTCCTGCAGGATGATGAAGGACCTAAGAGTTTGGAGGAGGTGCGGGAAAAGTATAGGAGACTGTATTCCAAAAGCTTTGTGTGCACCAGAAAACGCATCCATACAGCTCATGTGCCTGATGTGGATAAGGGACCAGGCAGCAGTGAGGAAGACTTTGCTGATGAGGGAATGGATGCAGCACTGCAGCCCCAGGGTTCGGGACTGTCTGTTTCAAGCATCCAGGAGTTTGAGGGataTCTCTTTTTCTACAGGCAGACTCTGGACCACTTACTGTGCACCGGAGTCCTCGCCCCAGACCAGCCAGTCCTGCCAGTGGTGTCAGAGGCCATCTCAGGCCTGTGGAAGAGCATGCCTCCAGAGCAAAGGGCTGAGGTCCAGCAGTGCACGCTGACGGAAAGCTGCATCACTTGGCTTGGCCCTGCTGATGACACCCCCTGCAGCTCTCTGAACTCATCCCAGCTCACCAGCTTAAACACATCTGGAACTTCTGCCCTGGAGGAGtcccacactgctgcctCCACGGAGTGGCGACTGCGAGAGGCTGAGAGAGACCTACAAGGACATTACAAGCTTCATTAGAAGCCACATGTCTGAGGAACAGGAGCTCACCCAGGACATGTGCTTAACTGATGACTATGAAGAGCTCTTCCTGAGGTGTTCTGAAAGCTTTGATGAGGATATTTAATCTCTTCACCGGCCTCTGCAGCTGTCGCTTTTCATCCTGTTacaagtttttgtttttaaggtaCAGTTCAGTGAGTTGTAGATAAAATGTGTTGCTCTTTTAAACTCATAAAGGTGTTCaggtatgttttcagttttttttttttaatggtgttCCTGAAAACCGCTTCTCTATCGCGACCTTCGCTTGTGTTCTCTTGCTAGTCAGgtgttttaactaaataaaaaatgaataaataaagccaGACTAAAGTGAGCAGTCA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671308.1 True 1484 mRNA 0.46 9 9170991 9192339
XM_022671309.1 False 1315 mRNA 0.48 9 9170991 9192565
XM_022671310.1 False 1432 mRNA 0.46 8 9170991 9192349

Neighbor

gene id symbol gene type direction distance location
LOC103042080 LOC108425318 coding downstream 580675 8587268 ~ 8590316 (-)
LOC103041774 NA coding downstream 617426 8542470 ~ 8553565 (-)
ttll1 ttll1,LOC102779306 coding downstream 663412 8498224 ~ 8507579 (-)
LOC103038884 pacsin2,LOC103038884,LOC108279716 coding downstream 674598 8464126 ~ 8496393 (-)
arfgap3 arfgap3,LOC108279714 coding downstream 708437 8447310 ~ 8462554 (-)
LOC103042700 LOC108425355,LOC108279935 coding upstream 31149 9223714 ~ 9227248 (-)
nup50 nup50,LOC107699201,LOC107719874,LOC107562145,LOC107601009 coding upstream 59772 9252337 ~ 9266879 (-)
arhgap8 arhgap8 coding upstream 242549 9435114 ~ 9459694 (-)
fbln1 NA coding upstream 658365 9850930 ~ 9864019 (-)
LOC103036113 LOC108279889 coding upstream 672795 9865360 ~ 9887488 (-)
G62950 NA non-coding downstream 150006 9020489 ~ 9020985 (-)
G62907 NA non-coding downstream 523695 8646885 ~ 8647296 (-)
G62858 NA non-coding downstream 736595 8433715 ~ 8434396 (-)
G62832 NA non-coding downstream 837668 8332508 ~ 8333323 (-)
G62821 NA non-coding downstream 890997 8277685 ~ 8279994 (-)
G63034 NA non-coding upstream 213840 9406405 ~ 9409548 (-)
LOC103022044 NA non-coding upstream 222478 9415043 ~ 9418822 (-)
G63041 NA non-coding upstream 289635 9482200 ~ 9482517 (-)
G63042 NA non-coding upstream 293457 9486022 ~ 9486233 (-)
G63105 NA non-coding upstream 445123 9637688 ~ 9642240 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 997175 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 1551559 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 2311321 6787342 ~ 6859670 (-)
G62484 NA other downstream 2433043 6671610 ~ 6737948 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 426096 9618661 ~ 9622788 (-)
G63217 NA other upstream 1122234 10314799 ~ 10411231 (-)
G63516 NA other upstream 3127990 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 3172903 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 3613406 12805971 ~ 13027498 (-)

Expression


Co-expression Network