nup50 (nup50,LOC107699201,LOC107719874,LOC107562145,LOC107601009)


Basic Information

Item Value
gene id nup50
gene name nup50,LOC107699201,LOC107719874,LOC107562145,LOC107601009
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9252337 ~ 9266879 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671314.1
TTGACGCGCGAATATCCCGTTTTGTAAGATGGTGGCGTGGTGAGAGTGTGAAGCTGCCGGTGTTGTTGTATTAGGAGCCGTTTTATCACAGTGTAGCAGTTTGGTACCGTGTGGTGCTCTTCAGAAAGGTCTGTGATGGCAAAGCGGATTGCGGAGAAGGAGTTGACAGACAGGAACTGGGATCAGGAAGATGAAGGGGAAGAGGCAGGGACATTTTCAACTGCGAGTGAGGATGTGATGAAAAACCGAGCCATCAAGAAAGCCAAGCGTAGAAATTTTGGAGCTGAGGGTGAGAGTGGAGGagcttttaaaagctttaaggGTTTCTCTCTGACCGCGTCGGCTCCggcagctggaggaggaggaggattcaCAGGCTTTGGTAATGGAACTGGATTCAAACCCCTCTCTGGTCTGACCAACGGCAGCATGTCATCTGTAACCCCATCTTTTGGAGGCTTCAGTTCCTCTGCTACCCCCAAGCCAATCACCGGCTCCTTGTCATTCAACGGCCCCGCCTCATCCAAGCCTGCAGACTCTGACATCACGTCTAACGGTTCCGCCCCCAGCTTGGCCGTGAGCTCTGGCGGCAGCAGTGGcagtagcagtaatagcagcTGCAGCAGTAAGGAGTACAACCGGCAGCTCACAGCTCTCAACTGTTCTGTCCGTGACTGGATCACCAAGCATGTCAACGACAACCCTCTGTGCGACCTCAACCCCATCTTCCGCGACTACGAGCGGCACCTGGCCAGCATCGAGAAGAAATACGGCAGCTGCTCCACTGCTGCAGACAGCAAGCATGAGAAGCcggtggcagcagcagcagcagaggatgCGCAAAAAAGGCTCCAGGcaggcggcagcagcagcagctccaccaCAACCACCCTGTCCTCCTTCTCTTCCACTTCTACTTCCTCCAGCATCAGCAGCGGCATAACACCCTCTCCAGCCAGCATCGGCACCACAGCTCCGGCTTTGTTCTCCTTCACCAAGGACAAGGACAACGCTGCCCAGGAGAAAAGCTCCGCTCCTGCCTCGGCTCCCGTGCCAGCTCCAGTCCCTGCAGGAGTTACCTTTAACTTTGGCAAGAAGCTGGATAGCTCCATGCTGGGCTCTCTCACCTCTGGAGGTACATCCGGCTTCTCCCcgttttcctcttcttcttcctcctcctcttcttccacaTCCCTGTTTGGAGGCGCGGCCAGCACTGGCACCTCTTCGTCCACCTTCTCCTTCACTGCAGCCAAGACAGAGACAGCCAGCAACAGCCAGACTGCAGATGAGAACGGTGGGGCTGAAGAAGAATCGGACGAGCCGCCAGTACCTGTGGTTAAAGAGATCAAGGAGAAAGATGCCTTCTACTCTAAAAAGTGCAAACTGTTCTACAAAAAGGAAAGCGAGTTTAAGGAGAAAGGCGTTGGTACACTGCATTTGAAAATGGTTTCAGAGGGCAAGCTGCAGCTACTGGTCCGGGCTGACACTAACCTGGGAAACAttctgctgaacatcatggttCCTTCCACCATGCCCTGCACACGAACAGGGAAGAACAACGTTATGGTGGTGTGCGTGCCAAACCCCCCTGTCGACGACAAGAACCCCACCACACCCGTTCCGATGCTCATCCGTGTCAAAACGGCAGAGGACGCCGATGAACTGCACAAAACTCTGCTGGAGAAAAAAGCGTGAGCCAGCACGTCCACCAACCCCCCCGTCCCCATCCAGACTTTCTCCAGCTCAGATTTTAAAAACACCCCCTCCCTCCCACTTACGTCAACTATTGCCTGAATGTGGTTTGCACGGCTGTATGTGAAAACACCCTGGTTGCGTCATTAGACACATACCGGACTCTTGCTTGCTGTGGTCCGTCTACAACAGTTCTTACATGCATGCCAACGCACATCCTTCATGAGCAGTGGCAACAAATCGGTTCGTATACTGTGAAAAACTAGCTGCGGTCCTACTTTCAGGCTTCTGTGAGGATCAGTTGCGTAAATGCTGGTTTAATTATtctgaaataaaacagtttaagGAACACAGCAGTGCGTTTAATGCAGTGAATGATACAGGCTGTCAGATAGCCTTGGTTCTTGAACATTCCGTTGGGTTTTAATTTTGCTGCTATTTAAAGAAAACGGAAAATGGAAAGGGTGTAGCAGagcatatttcttttttttttatgtggataAAATGCgaaattgtttttattcagcTATGAATGTGTGCagattaaataaattagttcTACACAAGAATGGATTGGAGTTTAGCCTGAATGCTTTGTACTTACGCCTTTCTCATAAAAGGGGAAGTTAACTTTGAAGGCAATTCACACGTCTTCGTATATTAGGAAAGCTTTTAAATTGCTTAATACCCCTCTGAAAGAGGATAAACTTGCATACGAAACTCTATAAACAGAGTAAACTATAAATCATTTgaagtttagtttattaaagtatttgATTGGATAAACTGAAGACATCAATCTCATCATTAAACTGCTTTGAGACATaatagagtatttttttttgttttgtttttctgtctgtgaTCTGTTTTGCTTCAGGTGTTTGCTGTAATTGATATTTATTCAGAATGAGGGTCCTCTAGTGTGCTTTGTGTAAATGAATCCTACAGTGAAACATCTGTCATTCTGCATCATTACTGAGACTGCTAGTGAACTCTACTGCACCCTACCTGCTGGCTCCATGGCAATCTGTCTTAAAGTGGATCTTGGagaaagttttgtttttctcgtcttttttttttttttcttttcattttccaaGTGACCTTTGTAACGCCTTAGATAACGAGGCATGCATTTAACAGCACCAGATACCTTTTTGTAGATTCGTTAATTGGCAAATAAATCAAATCGAcctgaaaaa
>XM_022671315.1
TTGACGCGCGAATATCCCGTTTTGTAAGATGGTGGCGTGGTGAGAGTGTGAAGCTGCCGGTGTTGTTGTATTAGGAGCCGTTTTATCACAGTGTAGCAGTTTGGTACCGTGTGGTGCTCTTCAGAAAGCAGGTCTGTGATGGCAAAGCGGATTGCGGAGAAGGAGTTGACAGACAGGAACTGGGATCAGGAAGATGAAGGGGAAGAGGCAGGGACATTTTCAACTGCGAGTGAGGATGTGATGAAAAACCGAGCCATCAAGAAAGCCAAGCGTAGAAATTTTGGAGCTGAGGGTGAGAGTGGAGGagcttttaaaagctttaaggGTTTCTCTCTGACCGCGTCGGCTCCggcagctggaggaggaggaggattcaCAGGCTTTGGTAATGGAACTGGATTCAAACCCCTCTCTGGTCTGACCAACGGCAGCATGTCATCTGTAACCCCATCTTTTGGAGGCTTCAGTTCCTCTGCTACCCCCAAGCCAATCACCGGCTCCTTGTCATTCAACGGCCCCGCCTCATCCAAGCCTGCAGACTCTGACATCACGTCTAACGGTTCCGCCCCCAGCTTGGCCGTGAGCTCTGGCGGCAGCAGTGGcagtagcagtaatagcagcTGCAGCAGTAAGGAGTACAACCGGCAGCTCACAGCTCTCAACTGTTCTGTCCGTGACTGGATCACCAAGCATGTCAACGACAACCCTCTGTGCGACCTCAACCCCATCTTCCGCGACTACGAGCGGCACCTGGCCAGCATCGAGAAGAAATACGGCAGCTGCTCCACTGCTGCAGACAGCAAGCATGAGAAGCcggtggcagcagcagcagcagaggatgCGCAAAAAAGGCTCCAGGcaggcggcagcagcagcagctccaccaCAACCACCCTGTCCTCCTTCTCTTCCACTTCTACTTCCTCCAGCATCAGCAGCGGCATAACACCCTCTCCAGCCAGCATCGGCACCACAGCTCCGGCTTTGTTCTCCTTCACCAAGGACAAGGACAACGCTGCCCAGGAGAAAAGCTCCGCTCCTGCCTCGGCTCCCGTGCCAGCTCCAGTCCCTGCAGGAGTTACCTTTAACTTTGGCAAGAAGCTGGATAGCTCCATGCTGGGCTCTCTCACCTCTGGAGGTACATCCGGCTTCTCCCcgttttcctcttcttcttcctcctcctcttcttccacaTCCCTGTTTGGAGGCGCGGCCAGCACTGGCACCTCTTCGTCCACCTTCTCCTTCACTGCAGCCAAGACAGAGACAGCCAGCAACAGCCAGACTGCAGATGAGAACGGTGGGGCTGAAGAAGAATCGGACGAGCCGCCAGTACCTGTGGTTAAAGAGATCAAGGAGAAAGATGCCTTCTACTCTAAAAAGTGCAAACTGTTCTACAAAAAGGAAAGCGAGTTTAAGGAGAAAGGCGTTGGTACACTGCATTTGAAAATGGTTTCAGAGGGCAAGCTGCAGCTACTGGTCCGGGCTGACACTAACCTGGGAAACAttctgctgaacatcatggttCCTTCCACCATGCCCTGCACACGAACAGGGAAGAACAACGTTATGGTGGTGTGCGTGCCAAACCCCCCTGTCGACGACAAGAACCCCACCACACCCGTTCCGATGCTCATCCGTGTCAAAACGGCAGAGGACGCCGATGAACTGCACAAAACTCTGCTGGAGAAAAAAGCGTGAGCCAGCACGTCCACCAACCCCCCCGTCCCCATCCAGACTTTCTCCAGCTCAGATTTTAAAAACACCCCCTCCCTCCCACTTACGTCAACTATTGCCTGAATGTGGTTTGCACGGCTGTATGTGAAAACACCCTGGTTGCGTCATTAGACACATACCGGACTCTTGCTTGCTGTGGTCCGTCTACAACAGTTCTTACATGCATGCCAACGCACATCCTTCATGAGCAGTGGCAACAAATCGGTTCGTATACTGTGAAAAACTAGCTGCGGTCCTACTTTCAGGCTTCTGTGAGGATCAGTTGCGTAAATGCTGGTTTAATTATtctgaaataaaacagtttaagGAACACAGCAGTGCGTTTAATGCAGTGAATGATACAGGCTGTCAGATAGCCTTGGTTCTTGAACATTCCGTTGGGTTTTAATTTTGCTGCTATTTAAAGAAAACGGAAAATGGAAAGGGTGTAGCAGagcatatttcttttttttttatgtggataAAATGCgaaattgtttttattcagcTATGAATGTGTGCagattaaataaattagttcTACACAAGAATGGATTGGAGTTTAGCCTGAATGCTTTGTACTTACGCCTTTCTCATAAAAGGGGAAGTTAACTTTGAAGGCAATTCACACGTCTTCGTATATTAGGAAAGCTTTTAAATTGCTTAATACCCCTCTGAAAGAGGATAAACTTGCATACGAAACTCTATAAACAGAGTAAACTATAAATCATTTgaagtttagtttattaaagtatttgATTGGATAAACTGAAGACATCAATCTCATCATTAAACTGCTTTGAGACATaatagagtatttttttttgttttgtttttctgtctgtgaTCTGTTTTGCTTCAGGTGTTTGCTGTAATTGATATTTATTCAGAATGAGGGTCCTCTAGTGTGCTTTGTGTAAATGAATCCTACAGTGAAACATCTGTCATTCTGCATCATTACTGAGACTGCTAGTGAACTCTACTGCACCCTACCTGCTGGCTCCATGGCAATCTGTCTTAAAGTGGATCTTGGagaaagttttgtttttctcgtcttttttttttttttcttttcattttccaaGTGACCTTTGTAACGCCTTAGATAACGAGGCATGCATTTAACAGCACCAGATACCTTTTTGTAGATTCGTTAATTGGCAAATAAATCAAATCGAcctgaaaaa

Function

symbol description
nup50 Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular transport; mRNA transport; and protein transport. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Orthologous to human NUP50 (nucleoporin 50).

NR:

description
PREDICTED: nuclear pore complex protein Nup50

GO: NA

KEGG:

id description
K14295 NUP50, NPAP60; nuclear pore complex protein Nup50

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671314.1 False 2900 mRNA 0.48 8 9252337 9266879
XM_022671315.1 True 2903 mRNA 0.48 8 9252337 9266879

Neighbor

gene id symbol gene type direction distance location
LOC103042700 LOC108425355,LOC108279935 coding downstream 25089 9223714 ~ 9227248 (-)
LOC103045460 NA coding downstream 59772 9170991 ~ 9192565 (-)
LOC103042080 LOC108425318 coding downstream 662021 8587268 ~ 8590316 (-)
LOC103041774 NA coding downstream 698772 8542470 ~ 8553565 (-)
ttll1 ttll1,LOC102779306 coding downstream 744758 8498224 ~ 8507579 (-)
arhgap8 arhgap8 coding upstream 168235 9435114 ~ 9459694 (-)
fbln1 NA coding upstream 584051 9850930 ~ 9864019 (-)
LOC103036113 LOC108279889 coding upstream 598481 9865360 ~ 9887488 (-)
LOC103042295 LOC108425305,LOC105896948,LOC105020256,LOC108279434,LOC105913407 coding upstream 719425 9986304 ~ 10032671 (-)
creld2 creld2 coding upstream 1128051 10394930 ~ 10405872 (-)
G62950 NA non-coding downstream 231352 9020489 ~ 9020985 (-)
G62907 NA non-coding downstream 605041 8646885 ~ 8647296 (-)
G62858 NA non-coding downstream 817941 8433715 ~ 8434396 (-)
G62832 NA non-coding downstream 919014 8332508 ~ 8333323 (-)
G62821 NA non-coding downstream 972343 8277685 ~ 8279994 (-)
G63034 NA non-coding upstream 139526 9406405 ~ 9409548 (-)
LOC103022044 NA non-coding upstream 148164 9415043 ~ 9418822 (-)
G63041 NA non-coding upstream 215321 9482200 ~ 9482517 (-)
G63042 NA non-coding upstream 219143 9486022 ~ 9486233 (-)
G63105 NA non-coding upstream 370809 9637688 ~ 9642240 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 1078521 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 1632905 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 2392667 6787342 ~ 6859670 (-)
G62484 NA other downstream 2514389 6671610 ~ 6737948 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 351782 9618661 ~ 9622788 (-)
G63217 NA other upstream 1047920 10314799 ~ 10411231 (-)
G63516 NA other upstream 3053676 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 3098589 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 3539092 12805971 ~ 13027498 (-)

Expression


Co-expression Network