LOC103028484 (srr,LOC108427077,LOC108279919,LOC106575990)


Basic Information

Item Value
gene id LOC103028484
gene name srr,LOC108427077,LOC108279919,LOC106575990
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11980371 ~ 11986784 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671343.1
ACCGATGGGTAgtataactcgacagaacaccggtccaAAGTCAAAGTCTTCTGTTTAGGTTTTCTGCTAAAGTCTCTGACTTTCCCTACGATGGAGAACACCACAGCAGACAGTATCACTCTTCAGGTGCTGAAGGAAGCGCGGGAGACGGTGATGTCCAGCCCTCTGGAGGTGATCAACACCCCCATGATCCCGTGAGAGACCACACTGCCTCTCCACGAGTCCTGCAGCATCCACCTGAAGCTGGAGAACATGCAGAGGACAGGTTCATTTAAAATCAGAGGTGTAGCAAATCAGTATGCTCGAAAAGCCAAAGGAGGTCATTTTGTCACAATGTCAGCAGGGAACTATGGAAAATCATTTGCCTTTGCCTCTAAACACTACGGAACCAAAGGCAAAGTGGTGATGCCTGAAACCGCCCCCATCTCCAGATCCCTGCTAATACAGAGTTTTGGTATAGAAGTTGAGCGAGTGCCGACGCCACGTCTCTTGGATGTAGTCAATCACTGTGTTCAAGAGGAAAACATGACCTTCATGCATTCTTTCAATGATCCAGATCTCATAACAGGACACGCCAGTCTAGGCTTTGAGGTTCTGGAGGTGGTTCCTAATCCTGATATAGTGGTGGTGTGCTGTGGTGGAGGGGGGTTACTGGCTGGAGTGGCCGCTGCCATTAAATTGTCAGGATGTGATGAAACTAAAATCTATGGAGTGGAGCCAGAAGGAGCATGCACAATGTACAAAAGCTTCATTGATAACAAACCTGTCGGCATGGACAGCAAAAGCATCGCTTCTGGTCTTGCACCTCCCTTTGCAGGTGCTCTACCGTTTGCGCTGTGTCAGAAGTACGTGGAGGAGATAGTGCTGGTAACAGATGAGGAAATCAAGTCCGCTGTGTCCACACTCTACAGAGCTGGTCTGGTAGTAGAACCATCAGGTTCTGCTGCTTTTGCTGCTGTCATTAACGGCAGAATACCCAACATCACCGGCAAAACTGTGGTGGTCATTCTGAGTGGAGGAAACATTGGGAAAGATGAGCTCACCAATTTCCCTGACTGAGATAGgagtttaaaacatgcattaatgcatcatcctaaaatgtgatttatatgatattaattatagtatatgtataaatattcatgagcaaaagccTAAATTCTATCGTTTCTTCTaacccactcctccactggactaaagcagcgttataccggatcaccaaagcatcttttttttttcataaaaaacagGTCCcagggcattcattcatactagagacctcaactagacattttaaaatgaatgaaaaatatgAGACCTTTAAGGCAGAAATACAGTATGCTCGTAATTTAAGTCACTCCTGTGAAAATGCTGCTATAGAAAATAAAGATGTAGCATAAATTATCTGACCTTTGTGTGAGAGCTGCTGTGATGAGCGACAGATGTAGCCGCCACTCAGCAGGAGATCTACTTCTCCtctcattaaaaatgaatggagCAGAAAGATGAGGGCTGTTTAACCAGAGATACATATAAAAGCTACAAGTTGTAGCTACTGTATTAATACTAGGAAATTTGATGTAGACTGAGTTGTATTTAGAACCTCTTTGCAGTAGAAAGTTGTTTGTGCTACAGTGGGTACCCATACAAAAAAGGAACGATGTAAAATTTATTCATAAAACACATCTGAAATTGgccaaaaa

Function

symbol description
srr Predicted to enable L-serine ammonia-lyase activity and L-threonine ammonia-lyase activity. Predicted to be involved in L-serine catabolic process and threonine catabolic process. Predicted to act upstream of or within cellular amino acid metabolic process. Orthologous to human SRR (serine racemase).

NR:

description
PREDICTED: phenylserine dehydratase-like isoform X2

GO: NA

KEGG:

id description
K01754 E4.3.1.19, ilvA, tdcB; threonine dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671343.1 True 1703 mRNA 0.43 9 11980371 11986784

Neighbor

gene id symbol gene type direction distance location
brd1 brd1 coding upstream 1515653 10440014 ~ 10464718 (+)
alg12 alg12 coding upstream 1559562 10409021 ~ 10420809 (+)
pim3 pim3 coding upstream 1663950 10310441 ~ 10316421 (+)
il17rel NA coding upstream 1909489 10042203 ~ 10070882 (+)
usp15 usp15 coding upstream 2013080 9929508 ~ 9967291 (+)
alg10 LOC108427075 coding downstream 3816 11990600 ~ 11997857 (+)
c7h12orf40 NA coding downstream 374400 12361184 ~ 12373369 (+)
LOC103032294 NA coding downstream 524104 12510888 ~ 12556587 (+)
LOC103032798 NA coding downstream 571876 12558660 ~ 12595497 (+)
LOC103033113 LOC108427023 coding downstream 617326 12604110 ~ 12626928 (+)
G63303 NA non-coding upstream 4818 11956885 ~ 11975553 (+)
G63285 NA non-coding upstream 168781 11811156 ~ 11811590 (+)
G63269 NA non-coding upstream 261829 11718022 ~ 11718542 (+)
G63268 NA non-coding upstream 278665 11701418 ~ 11701706 (+)
G63260 NA non-coding upstream 344825 11630642 ~ 11635546 (+)
G63328 NA non-coding downstream 214 11986998 ~ 11990396 (+)
G63329 NA non-coding downstream 20501 12007285 ~ 12007519 (+)
G63410 NA non-coding downstream 390362 12377146 ~ 12378927 (+)
LOC111192954 NA non-coding downstream 702535 12689319 ~ 12696748 (+)
G63460 NA non-coding downstream 712264 12699048 ~ 12746828 (+)
G63051 NA other upstream 2330284 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 2539807 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 3440248 8526218 ~ 8540123 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 3565332 8401840 ~ 8415039 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 5124609 6851230 ~ 6855762 (+)
G63432 NA other downstream 481266 12468050 ~ 12468902 (+)
LOC111192955 NA other downstream 1169442 13156226 ~ 13161367 (+)
gata3 gata3,LOC107555822 other downstream 2180445 14167229 ~ 14242234 (+)
G64015 NA other downstream 2757951 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 4408542 16395326 ~ 16426623 (+)

Expression


Co-expression Network