LOC103023221 (cpne8,LOC108427072,LOC108279828,LOC104935575)


Basic Information

Item Value
gene id LOC103023221
gene name cpne8,LOC108427072,LOC108279828,LOC104935575
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12029314 ~ 12246559 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671344.1
cacacacacacgcgcgcgcgcgcaTACTAGCTCACTCACAcgctccctcactcactcacgcgCACGCACGCACATGCTCTGGCCGGGGCGCGGGAGCTGCTCGCGCTGCGGTTCCTGGAAGGGCTCGGACTCCAGCGCGCGGGGTGTGTTTATCTCATGCCCTCAGCCGCGatgaacagcagcagcttcCTGAATATGGCGGCGATCGGAGACTTCGACCCGCTGAGCGCCGCCATCCCCGCCACCAAAGTTGAGATCACGGTCTCCTGCAGaaACCTGCTCGACAGGGACACGTTCTCCAAATCAGATCCAATCTGCGTGCTGTACACCCAGGGCATCGGCAACAAGGAATGGAGagagttCGGCAGGACAGAGGTGATCGACAACACCCTGAACCCAGAGTTTGTGCGAAAGTTCATCCTGGACTATTTCTTCGAGGAGAGGCAGAACCTGAGGTTTGATCTGTATGACGTGGACTCGAAGAGCAGCAACCTTTCTAAACATGACTTTCTGGGACAGGCGCAATGCACTCTGGGGGAGATCGTGGGCTCTATGGGGAGTCGGTTAGAGAAGCCTCTGGGGGGCATTCCTGGAAAGAAGTGTGGCACCATTATTGTGAAGGCTGAGGAGCTGAACAACTGCAGAGAATCTGTGATGATGCAATTTTGTGGCAACAAGCTGGACAAGAAGGACTTTTTCGGCAAGTCTGACCCTTTCCTCGTCTTCTACCGCAGCAATGAGGACGGAACATTCACTATTTGCCATAAGACAGAAGTGGTGAAGAACACCCTGAACCCTGTGTGGCAGGCCTTCAAGATCCCCGTCAGAGCCTTGTGTAACGGAGACTACGACAGaaCAATCAAGATCGAAGTGTATGACTGGGACAGAGATGGCAGCCATGATTTCATTGGAGAGTTCAGTACGAGCTACAGAGAGTTGTCCAGAGGCCAGTCCCAGTTTAACGTCTACGAGGTGATAAACCCGAAGAAGAAAGGCAAGAAGAAAAAGTACCTGAATTCTGGAACGGTAACACTCCTGTCCTTCCTGGTGGATATTGACGTCACTTTCCTGGACTACATTAAGGGCGGGACTCAGATTAATTTCACTGTGGCGATTGATTTCACCGCCTCGAATGGCAACCCTGCCCAGCCGACCTCTCTGCACTACATGAGTCCATACCAGCTCAACGCCTACGCCATGGCGCTGAAAGCCGTGGGAGAAATTATTCAGGATTATGACAGTGACAAGATGTTTCCCGCACTGGGTTTCGGTGCCAAACTTCCGCCTGACGGGCGAGTGTCCCACGAGTTCGCCCTGAATGGAAACCCTCAGAACCCGTATTGTAATGGAATAGATGGTGTGATGGAGGCGTACTACCAGAGCCTGAAGTCTGTCCAGCTGTACGGCCCCACCAACTTCTCCCCAGTCATAAACCATGTAGCCAGGTATGCTGCCTCAGTAAAGGACGGCTCTCAGTACTTCGTCCTGCTCATCATCACAGACGGAGTCATCTCCGACATGGCCCAGACCAAAGAGTCCATTGTCAATGCTTCCTGTCTTCCCATGTCAATTATCATCGTTGGCGTTGGACCGGCTGAGTTTGATGCGATGGTGGAGCTGGATGGAGATGAAGTGAGGATTTCGTCGAGAGGCAGATATGCAGAAAGAGACATTGTGCAGTTCGTTCCATTCCGAGACTACATCGACCGTACTGGGAACCACATCCTCAGCATGGCCCGGCTGGCGAAGGACGTCCTGGCCGAGATCCCCGACCAGTTCCTGTCCTACATGAAGACCAGGGGCATCAAACCCTCACCCGCGCCCCCTCCCTACACGCCCCCCGGACACCCGCTCCAGACCCAGATCTGATCCGCTAGCGtccgtctctccctctctctctttcggtatatctctatctctctctgaaACACTCAGTGATGTAGAGGGGCTCGCTCGCCcccctctatctgtctctctctcttgttgcaCTATGGGCAGTAGAAGGAAGACAGCAGCGTGGTCGGAGGAGGCCAGTGAGAGCAGATTTACTACAATTCTGTCagggtctctttctctctctctctctctctctctctcccgctctgcCTCGGAACCTGGCTAGCTTATCTGTTGTAGCCTCAGTGTTGGGATGGACAGGAGCCGGATGTTATTCCGGCTCTCTCTCGGACTGATAGTAGGAGATGATGGAGGGATGAGGCAGTGTCTCTTGGACTCAATCGCAGGTTTTTCCAGGAGAACGGGCCGGGGGTCTTCAGCCTCTGGCCGTGAACCCACTCTCTCGACTGTTGTAAATACCTTTGGAAATAGATATTTCCTCTTATTTATGTAtatccttctctctgtctctctccttcccttcttttttactttctcttttttactttctt
>XM_022671345.1
cacacacacacgcgcgcgcgcgcaTACTAGCTCACTCACAcgctccctcactcactcacgcgCACGCACGCACATGCTCTGGCCGGGGCGCGGGAGCTGCTCGCGCTGCGGTTCCTGGAAGGGCTCGGACTCCAGCGCGCGGGGTGTGTTTATCTCATGCCCTCAGCCGCGatgaacagcagcagcttcCTGAATATGGCGGCGATCGGAGACTTCGACCCGCTGAGCGCCGCCATCCCCGCCACCAAAGTTGAGATCACGGTCTCCTGCAGaaACCTGCTCGACAGGGACACGTTCTCCAAATCAGATCCAATCTGCGTGCTGTACACCCAGGGCATCGGCAACAAGGAATGGAGagagttCGGCAGGACAGAGGTGATCGACAACACCCTGAACCCAGAGTTTGTGCGAAAGTTCATCCTGGACTATTTCTTCGAGGAGAGGCAGAACCTGAGGTTTGATCTGTATGACGTGGACTCGAAGAGCAGCAACCTTTCTAAACATGACTTTCTGGGACAGGCGCAATGCACTCTGGGGGAGATCGTGGGCTCTATGGGGAGTCGGTTAGAGAAGCCTCTGGGGGGCATTCCTGGAAAGAAGTGTGGCACCATTATTGTGAAGGCTGAGGAGCTGAACAACTGCAGAGAATCTGTGATGATGCAATTTTGTGGCAACAAGCTGGACAAGAAGGACTTTTTCGGCAAGTCTGACCCTTTCCTCGTCTTCTACCGCAGCAATGAGGACGGAACATTCACTATTTGCCATAAGACAGAAGTGGTGAAGAACACCCTGAACCCTGTGTGGCAGGCCTTCAAGATCCCCGTCAGAGCCTTGTGTAACGGAGACTACGACAGaaCAATCAAGATCGAAGTGTATGACTGGGACAGAGATGGCAGCGTTTTCTCAGATGCCAAGGACACTGTACATCGTTTTAAAAGACTGGCAACCCAGGGCCATGCTAAACAATATCAGGAACATATCAGGTCCAACCATGATTTCATTGGAGAGTTCAGTACGAGCTACAGAGAGTTGTCCAGAGGCCAGTCCCAGTTTAACGTCTACGAGGTGATAAACCCGAAGAAGAAAGGCAAGAAGAAAAAGTACCTGAATTCTGGAACGGTAACACTCCTGTCCTTCCTGGTGGATATTGACGTCACTTTCCTGGACTACATTAAGGGCGGGACTCAGATTAATTTCACTGTGGCGATTGATTTCACCGCCTCGAATGGCAACCCTGCCCAGCCGACCTCTCTGCACTACATGAGTCCATACCAGCTCAACGCCTACGCCATGGCGCTGAAAGCCGTGGGAGAAATTATTCAGGATTATGACAGTGACAAGATGTTTCCCGCACTGGGTTTCGGTGCCAAACTTCCGCCTGACGGGCGAGTGTCCCACGAGTTCGCCCTGAATGGAAACCCTCAGAACCCGTATTGTAATGGAATAGATGGTGTGATGGAGGCGTACTACCAGAGCCTGAAGTCTGTCCAGCTGTACGGCCCCACCAACTTCTCCCCAGTCATAAACCATGTAGCCAGGTATGCTGCCTCAGTAAAGGACGGCTCTCAGTACTTCGTCCTGCTCATCATCACAGACGGAGTCATCTCCGACATGGCCCAGACCAAAGAGTCCATTGTCAATGCTTCCTGTCTTCCCATGTCAATTATCATCGTTGGCGTTGGACCGGCTGAGTTTGATGCGATGGTGGAGCTGGATGGAGATGAAGTGAGGATTTCGTCGAGAGGCAGATATGCAGAAAGAGACATTGTGCAGTTCGTTCCATTCCGAGACTACATCGACCGTACTGGGAACCACATCCTCAGCATGGCCCGGCTGGCGAAGGACGTCCTGGCCGAGATCCCCGACCAGTTCCTGTCCTACATGAAGACCAGGGGCATCAAACCCTCACCCGCGCCCCCTCCCTACACGCCCCCCGGACACCCGCTCCAGACCCAGATCTGATCCGCTAGCGtccgtctctccctctctctctttcggtatatctctatctctctctgaaACACTCAGTGATGTAGAGGGGCTCGCTCGCCcccctctatctgtctctctctcttgttgcaCTATGGGCAGTAGAAGGAAGACAGCAGCGTGGTCGGAGGAGGCCAGTGAGAGCAGATTTACTACAATTCTGTCagggtctctttctctctctctctctctctctctctcccgctctgcCTCGGAACCTGGCTAGCTTATCTGTTGTAGCCTCAGTGTTGGGATGGACAGGAGCCGGATGTTATTCCGGCTCTCTCTCGGACTGATAGTAGGAGATGATGGAGGGATGAGGCAGTGTCTCTTGGACTCAATCGCAGGTTTTTCCAGGAGAACGGGCCGGGGGTCTTCAGCCTCTGGCCGTGAACCCACTCTCTCGACTGTTGTAAATACCTTTGGAAATAGATATTTCCTCTTATTTATGTAtatccttctctctgtctctctccttcccttcttttttactttctcttttttactttctt

Function

symbol description
cpne8 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE8 (copine 8).

NR:

description
PREDICTED: copine-8 isoform X1

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671344.1 False 2408 mRNA 0.53 20 12029314 12246559
XM_022671345.1 True 2501 mRNA 0.53 21 12029314 12246559

Neighbor

gene id symbol gene type direction distance location
tprkb tprkb coding downstream 38809 11986914 ~ 11990505 (-)
trmu trmu,LOC102792203 coding downstream 50555 11970797 ~ 11978759 (-)
LOC103026753 LOC108427079 coding downstream 63507 11824846 ~ 11965807 (-)
LOC111192951 LOC108427081 coding downstream 223737 11780555 ~ 11805577 (-)
LOC103026034 gramd4,gramd4a,LOC108427081,LOC107721158 coding downstream 249465 11724467 ~ 11779849 (-)
LOC103029962 LOC108427070,LOC108279892 coding upstream 8746 12255305 ~ 12320325 (-)
LOC103029428 abcd2,LOC108427069,LOC107689723,LOC107566844,LOC107689245,LOC106575983 coding upstream 83474 12330033 ~ 12359741 (-)
LOC103033667 NA coding upstream 437667 12684226 ~ 12689035 (-)
LOC103024791 parp11,LOC108280019,LOC107726831,LOC107597042,LOC107689238,LOC105020367,LOC102790985,LOC107748476 coding upstream 445031 12691590 ~ 12699482 (-)
LOC103034510 tnni1d,LOC108280151,LOC108427054,LOC107597014,LOC103374597 coding upstream 1003093 13249652 ~ 13260256 (-)
G63384 NA non-coding downstream 45754 11983296 ~ 11983560 (-)
G63320 NA non-coding downstream 206237 11817096 ~ 11823077 (-)
G63265 NA non-coding downstream 393799 11630642 ~ 11635515 (-)
G63259 NA non-coding downstream 1370890 10658204 ~ 10658424 (-)
G63255 NA non-coding downstream 1398854 10630129 ~ 10630460 (-)
G63519 NA non-coding upstream 89060 12335619 ~ 12336210 (-)
G63538 LOC108427067 non-coding upstream 281330 12527889 ~ 12529641 (-)
G63540 NA non-coding upstream 288406 12534965 ~ 12538377 (-)
G63552 NA non-coding upstream 336218 12582777 ~ 12587477 (-)
G63607 NA non-coding upstream 553906 12800465 ~ 12803555 (-)
G63217 NA other downstream 1618083 10314799 ~ 10411231 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other downstream 2406526 9618661 ~ 9622788 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 3855498 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 4409882 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 5169644 6787342 ~ 6859670 (-)
G63516 NA other upstream 73996 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 118909 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 559412 12805971 ~ 13027498 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other upstream 1594634 13841193 ~ 13887868 (-)
G64034 NA other upstream 2538762 14785321 ~ 14786149 (-)

Expression


Co-expression Network