LOC103032798


Basic Information

Item Value
gene id LOC103032798
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12558660 ~ 12595497 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671351.1
tctctctgtctctcgcccaCTCTGCTAGTCTGGAGAAGCTGGGCTGCAGGACAGAGCACCATGAGTGTGGAGAAAAAACAACCACGACAACCATGCTGCTCCAAACTAAAGCTATTTCTGTTCGCCATGTCCTTTATCTACTTCGCCAAAGCGTTCCAGGGCAGTTATATGAAGAGCTCGGTGGTGCAGATCGAGAGACGCTTTGATATCCCCAGCTCTCTGATAGGATTCATCGATGGAAGCTTTGAAATTGGTAATCTGCTGATTATAGCGTTTGTGAGTTACTTCGGGGCGAAGCTCCACCGACCCCGGCTGATTGGCGTGGGCTGTTTGGTTATGGCTGTCAGCTCCTTTATCACCGCTCTGCCCCACTTCTTCCAGGGACCGTACAAATATGCAACTACAATTGCCCACTTCTCTGAGGGTAATACCACCGAGACCATTCTGCCCTGCCTGGGCAACACAACTCATCCACAGGGTGAGGAACCGACTTCACCAGAGAATCAAAAAGAGTGTGAGCAAGTGGCTGGATCATCGTTGTGGGTCTATGTGTTTCTGGGAAACATGCTGAGGGGTATTGGAGAGACGCCGGTCATGCCTTTAGGACTGTCCTATCTGGATGATTTTGCCCGAGAGGAGAACACAGCGTTATATCTGGcGTGTATACAGACGGTGGGGATTCTGGGGCCGATGTTTGGTTATATGCTGGGCTCCTTCTGTGCCAAACTCTACGTGGACATTGGAAGAGTGGACTTAGACACCATCGCCATTGATCATAAAGACACTCGCTGGGTGGGGGCCTGGTGGCTCGGCTTCTTGGTGACCGGAACTGTGATGCTGGTGGCTGGGATCCCATTTTGGTTCCTGCCCAGATCACTGCCCAAAcaaggagaagaagagaagaagagctgTGATGATCAAGAGGGCGAGCAGGATACGTTCATCACCACGGACAGCACCAGCAGCCCAGCACCCGACAAACAAGAGCCCGTCACCATGTCTGCCCTCGCTAAAGATTTTCTACCGTCATTAAGAAAGCTCTTCAGTGATGTCATCTATGTGCTCATCATCCTGACCGGCCTGGTTCAAGTTAACGGCTTCATCGGGATGATCACGTTCAAGCCGAAGTACATGGAGCAGACCTATGGCCAGTCCGCATCGAAGGCCATCTTCCTGATAGGTATTATGAATCTGCCGGCTGTAGCTCTGGGGATTCTCACAGGCGGCTTTGTGATGAAGAGGTTTAAACTGAACATCCTCGCGGCGTCCAAAATCTCCATCGCCACCGCCCTGCTATCCTTCATTCTGCTGCTCAGCCAGTACTTTATGCACTGTGGAAACACACACGTGGCCGGGCTCACCTCGTCCTATCAGGGTAATCTGGAGGTGTCGCATCAGGAGGATAGTCTGTTGTCTCAGTGTAACTCGGGCTGCTCGTGCTCTCTGAAGCACTGGGATCCGGTCTGCTCCAATAATGGTCTGACCTATGCTTCCCCCTGCCTGGCCGGCTGCCAGAGCTCCACTGGACAGGGCAAGGAGATGGTCTTCCACAACTGCAGCTGTGTTGAAGAATCTCTCATGCCGGCTGCAAACATGTCGGTGGTGCTGGGTCAGTGTCCGCGTACGGCAGACTGTGATCACATGTTTAAGATCTACATGGCGGTATCAGTTCTGGGGGCCTATATCTCAGCCTGTGGGGCCACACCTGGATACATGATCCTGCTGAGATCCATCCATCCTGATCTGAAGTCTTTAGCACTGGGGATGCAGACGCTGATAGTCAGGACTCTGGGTGCAATCCCTCCTCCAATATATTTCGGAGCTTTGATCGACAAAACGTGTCTAAAATGGGGAGTGAAGCGATGTGGTGGACGAGGGGCTTGTCGCTTATATGACGCTGATGCTTTCAGAGCTACGTTTCTGGGTCTGATCTACGGTCTGTACACTCTCTCGTATCTGCTGTGCGGGCTGGTCTACAACAGACTGTCTCACCGCCACAAACGGCAGACCGTggagaaacaggccaaagaagCCGAGCAGGAGGGAAAGGGCACCGTCAACGGAGACAAAAACGGCCCTACCGCCATCATCAAGTGCAAGGAGGACCTGGATAAAGAGACCACTATCTGAATTCACCATCTGCACCAAAAAAACAGACCCGTTATTTAGGCCACATTCAgtgatactgtatattaatctgAACCTGTACAGAGATGAATGGGTTTCTGAGCTGAATGTAGTTTTATAGTTTGTATGCAGTCCTGGAGCTGCATGTTACACACGGTTAAAAGCATCCTTTTTCAGTTACTGGACGGAAGTATCAGCATTTTTTCATTCTGTCACTCAAAAACTTTGAATCCACActttctacataatttgaatctgAATTATTTACACTGTGTCCAAATGTCGTAatgaataatgtaattaatgtaaatagAATATAAATGACCCAGAATTAGGATACAGAATAAAATTTTATCCACTAATAGTTAAGATGGCTTACGAATATAGTATTTTTGGAAATTAGGTTAACATATCTCTATGTCTATCGATCGGTATGGGGTCATGGTTTAATGCATGCAGTTATATGGAGAATACACAATATGTGCTATAAAAGGTGTGCACTGACATCATGAGCCAGAACACACCCACTTTTGTATACTTCTGTGTTGAACCTATGCCATAGCCTACGAGTCGCCAAGCACCCTACACCATAGCATATGCTGTACCTCGACGAATAATGTAATgctgcagctgtgattggtccgccgGGCCTTGCACGCCAAAGTATAATACATGTAGGCTACGACTAAATTGGCCTTTCTAGAGTTCTATTGACCTGCAGGTTTTTTGAGTTCATAATATTTATAGCACatctgatccaactaatgaactaattgATGAGCTCTTATTGTAGTAGCGTCTTATTCTGGTCACTAACTGCGTTTTTAAGAGCCTCGATGTCCGCCGTCTGCATTGGGGCGAGGTATTCTGTAACGCGGGACCAGACAGAGGAggacgtaaatgcaggtaaa

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko04610 Complement and coagulation cascades
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671351.1 True 3038 mRNA 0.48 15 12558660 12595497

Neighbor

gene id symbol gene type direction distance location
LOC103032294 NA coding upstream 2073 12510888 ~ 12556587 (+)
c7h12orf40 NA coding upstream 185291 12361184 ~ 12373369 (+)
alg10 LOC108427075 coding upstream 560803 11990600 ~ 11997857 (+)
LOC103028484 srr,LOC108427077,LOC108279919,LOC106575990 coding upstream 571876 11980371 ~ 11986784 (+)
brd1 brd1 coding upstream 2093942 10440014 ~ 10464718 (+)
LOC103033113 LOC108427023 coding downstream 8613 12604110 ~ 12626928 (+)
LOC103023853 NA coding downstream 37782 12633279 ~ 12650099 (+)
iapp iapp coding downstream 57525 12653022 ~ 12658646 (+)
trnag-gcc_1 NA coding downstream 63951 12659448 ~ 12659518 (+)
pyroxd1 pyroxd1,LOC107584714,LOC107597005 coding downstream 71683 12667180 ~ 12681027 (+)
G63410 NA non-coding upstream 179733 12377146 ~ 12378927 (+)
G63329 NA non-coding upstream 551141 12007285 ~ 12007519 (+)
G63328 NA non-coding upstream 568264 11986998 ~ 11990396 (+)
G63303 NA non-coding upstream 583107 11956885 ~ 11975553 (+)
G63285 NA non-coding upstream 747070 11811156 ~ 11811590 (+)
LOC111192954 NA non-coding downstream 93822 12689319 ~ 12696748 (+)
G63460 NA non-coding downstream 103551 12699048 ~ 12746828 (+)
G63465 NA non-coding downstream 212370 12807867 ~ 12811899 (+)
G63488 NA non-coding downstream 562828 13158325 ~ 13163098 (+)
G63490 NA non-coding downstream 575305 13170802 ~ 13193768 (+)
G63432 NA other upstream 89758 12468050 ~ 12468902 (+)
G63051 NA other upstream 2908573 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 3118096 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 4018537 8526218 ~ 8540123 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 4143621 8401840 ~ 8415039 (+)
LOC111192955 NA other downstream 560729 13156226 ~ 13161367 (+)
gata3 gata3,LOC107555822 other downstream 1571732 14167229 ~ 14242234 (+)
G64015 NA other downstream 2149238 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 3799829 16395326 ~ 16426623 (+)
G64289 NA other downstream 3843723 16439220 ~ 16442449 (+)

Expression


Co-expression Network