LOC103034510 (tnni1d,LOC108280151,LOC108427054,LOC107597014,LOC103374597)


Basic Information

Item Value
gene id LOC103034510
gene name tnni1d,LOC108280151,LOC108427054,LOC107597014,LOC103374597
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13249652 ~ 13260256 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671365.1
CAGCCAGGAGATAAAAGCAGCCATTGTCTCAGCGCTCTGTTGTTCTGGCATCAGTCAGTTCTCAGCTACTCCACAGCACTCAGCTGCCACCATGTCGATAGAGGGACGTCCAAAAGGGAACCCAAAGGCATTTGACAAGCCAAAATGCAAGATTTCTGCATCCCGAAAACTCTCCCTGAAGATGCTGCTCCTGAACAGAGCGATGGAGGACCTGGAGAGGGAGAAGCAGGACAGAGATGAGGAGAAGATCCGTTATCTGGATGAGAAGATGCCTCCTCTACAGCTTGCTGGGCTCTCGCTGGCAGACTTACAGAATCTGTGCAGAGAGCTCTATGAAAAGATTGATGTTGTGGACGAAGAGCGATACGACTGCGAGAATAAAGTCATCAAGCACAATAAAGATATTCATGAGCTGAAGCTGAAGGTTCAGGACCTGGGGGGTAAATTTAAGAAGCCGGCTCTGAGGAAGGTGCGGGTCTCTGCTGATGAGATGATGCGAGCTCTGCTGGGCTCCAAACACAAGGGCTCCATGGACCTCCGAGCCAACCTGAAGTCAGTCAAGAAGGAGGATATCAAACAGGAGAAGgTCCTGACTAGTGAGGTAGGCGACTGGCGTAAGAACGTGGAGGCCATGTCTGGTATGGAGGGCAGGAAGAAGATGTTCgatgctgctggaggaggacaGTAAACCCCATCATCCCCCTGACGTGACACTGTGGAGGGAGAGCCCAGTCTTAGACCCCGTTTACACCTGATTAAATCATGTGAATaatatctagattgtattcTGATTAGATTTGagccacatgcatttacacttggtagTCAAATGTGATTCAGTTGTTTTGGAAGGTGTTTGGTTTGGGCTGCTTAAAGTGTCTTGGAGTGACAGACATGTTTACACTGTAATAACATGACTTAAATGTGTCTCTGACaatctcctgaagtggtttgagtgattggatttgtatctgttttaaatgcatctcagatcacctcctgaagtggtttgagtaatgggaattgtatctgttttaaatgcatctcagatcacctcctgaagtggtttgagtgatgggatttttatctgttttaaatgtgtatcaTATCACCTCCTGAAATGGTTTAAGAAattggatttgtatctggtttaaatgtgtctcagatcacctcctaaagtggtttgagtaatcgggtttgtatttggtttaaatgcgtctcagatcACCCCAGAAGTATTTTAAGTAATGGGAATTGTATCTGgtttaaatgcatctcagatctcctcctgaagtggtttgagtgatgggatttttatctgttttaagtgcgtctcagaccacctccagAAATGGTTTTAGAAattggatttgtatctggtttaaatgtgtctaggaccatctcctgaagtggtttgagcgatcggatttgtatctgttttaaatgcgtctcagaccacctccagAAGTGGTTTGAGGAATTGGATTTGtacctgttttaaatgtgtctcagatcacccctgaagtattttaaatgaTGGGAATTGTATCTGGTTTTAATGCATCTCGTTccatctcctgaagtggtttgagtgatcatatttgaatctgttttaaatgcgtctcagaccacctcctgaagtggtttgagtgactGGATATGTATCTGGTCTTGCAAGTGTTTAGACTAGCAGTTTAATGTGGCTTGGTCTTGTCCAGATATAATCCCAATACTTAAGTCGCATGatgtgaccaggtgtaaacgggGTCTAAATGgaacagagagaagaaaggaaagaaaggagtTGGAACTACCTGTACTTTACTTACTGAAATGTCGTGgcatacacttttaaaaaataaatgagaaggAAGAAAAGGGTTCTTCAAAACAATGGCAAAGTTTTCTAAAGACTAAAAACTTTctagtgtgaagaaccttttaaaagACCTAACATGTAAAGTTCCTACCTTACAATACTAGTCAAGCATGTGGAACCTTCCCATtcaatgatttttctttattattatttttttttgatgtatTCGATTAATGCTGAAGACATTAGAACTGTAAgagaacacaaaaaaactctACTCTTGAAACAAGGTGAGATATTGTTGGGCATGAAGGTATCTAGCTTCTCTATggcatttaaaatttaaatatttattctttattggaCAGCATCAAtaagtgttccttcatagttttgatgtcttaaaaatttactaaaaatgtagaaaataataaaaataaagaaacatttgATAAAGAATGTTTGATTGGTACAGTATACATCAAAATACAATACTACAAGAACATAATTTTGTTAAACGATATGGTGCACACTAAACTATagttattaacattaaaataataaagataatgACTAGTTGTGTCTAATATATAAATCCAGGCACTGCAGTAAGTGTGTAGCTATTAGTAATAAACGTGATAATAAACTTCACTACAAGTTTAAGGGCTTGGTTCTTAACAAAGACCTGGGCGGGGTTGTGCCGCACATGCTggaatgtgtgtaatgtgtgtgtgtgtgtgtgtgtgctgtatggATGTCTTAAAGATGTTGAGATAGTGAAAGATTAAACATTGCTCAATCA

Function

symbol description
tnni1d Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex.

NR:

description
PREDICTED: troponin I, slow skeletal muscle-like

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671365.1 True 2621 mRNA 0.40 9 13249652 13260256

Neighbor

gene id symbol gene type direction distance location
LOC103024791 parp11,LOC108280019,LOC107726831,LOC107597042,LOC107689238,LOC105020367,LOC102790985,LOC107748476 coding downstream 550170 12691590 ~ 12699482 (-)
LOC103033667 NA coding downstream 560617 12684226 ~ 12689035 (-)
LOC103029428 abcd2,LOC108427069,LOC107689723,LOC107566844,LOC107689245,LOC106575983 coding downstream 889911 12330033 ~ 12359741 (-)
LOC103029962 LOC108427070,LOC108279892 coding downstream 929327 12255305 ~ 12320325 (-)
LOC103023221 cpne8,LOC108427072,LOC108279828,LOC104935575 coding downstream 1003093 12029314 ~ 12246559 (-)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding upstream 136229 13396485 ~ 13422065 (-)
depdc4 LOC108427048 coding upstream 163382 13423638 ~ 13432932 (-)
LOC103026355 metap2,metap2a,LOC107755160,LOC107689230,LOC107597011 coding upstream 192700 13452956 ~ 13469076 (-)
vezt vezt coding upstream 214067 13474323 ~ 13507294 (-)
LOC103026945 LOC108427039 coding upstream 386140 13646396 ~ 13692850 (-)
G63692 NA non-coding downstream 12163 13232151 ~ 13237489 (-)
G63669 NA non-coding downstream 50817 13173367 ~ 13198835 (-)
G63664 NA non-coding downstream 82978 13159519 ~ 13166674 (-)
G63662 NA non-coding downstream 87290 13158372 ~ 13162362 (-)
G63617 NA non-coding downstream 395291 12852274 ~ 12854361 (-)
G63701 NA non-coding upstream 64300 13324556 ~ 13324875 (-)
G63704 NA non-coding upstream 84894 13345150 ~ 13345421 (-)
G63766 NA non-coding upstream 184511 13444767 ~ 13447799 (-)
G63773 NA non-coding upstream 282370 13542626 ~ 13543568 (-)
G63830 NA non-coding upstream 301103 13561359 ~ 13562094 (-)
LOC103025415 iqsec3,LOC107689235 other downstream 222154 12805971 ~ 13027498 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other downstream 748989 12365468 ~ 12500663 (-)
G63516 NA other downstream 869096 12320555 ~ 12380556 (-)
G63217 NA other downstream 2838421 10314799 ~ 10411231 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other downstream 3626864 9618661 ~ 9622788 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other upstream 580937 13841193 ~ 13887868 (-)
G64034 NA other upstream 1525065 14785321 ~ 14786149 (-)
LOC111192906 NA other upstream 1729973 14990229 ~ 14992730 (-)
G64060 NA other upstream 1733908 14994164 ~ 14994832 (-)
LOC103027187 NA other upstream 2411050 15671306 ~ 15867795 (-)

Expression


Co-expression Network