LOC103030426 (nr2c1,LOC107689225,LOC107755159)


Basic Information

Item Value
gene id LOC103030426
gene name nr2c1,LOC107689225,LOC107755159
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13544952 ~ 13557590 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671371.1
ggttTAAGATTGTACTTGCACTTTGATGTTTTTGCTAGGGCAGAGTTGTTTCAGTGGTTAGGATGTTAGGATCATCACAGGGATGTCGATTTAAACCccagttttattaaataaggCAGAGATATTGGTTAAATCAGTTTATTCTACAGTTAGGGTTGTGGGTCCAAACtttagactggtactgtacatttgaCCATggtaaatttaaaaaacatcagCATTAGAAGCACGATTTTACCACCCAGCACTATTAAATGCACACATGGGGGAATACAAAGGTTTAATCAGTCCTAAAGTTTCATTACAGCACCCCAACTCTTACAGCTACTACTGGCTATTTCTCCTGGCCGCTTCTGCGCATGATCGCTCCCCAGCGTGTTGGGCAGATCCAGGTCGCGAACTCTGACCTGAGCCGAACTGATTTcggtttaataaaacactaaaatcacAGCCGCTGTGCGGATAAATCACCGTGACACGgtgtgtggaagtgtgtgcgtgcatgcatCACATGGGGAGTAGTATTTGAGCCAAAGAAGGGTGGGATCAGTACCATGGCAGGAGAAAGTCCCAGAATTCAGTTGGTGTCAGCAGATGGAGGCCTACAGatTGTGACAGATCAGCAGTTGGGCCAGAAGGTACAGATAGTAACGGCGTATGACCAGACGGGCACCGGCAAGCAGCAGTTCATATTAGCCAACGTAGATTATCCCAGTCAGGATAAACTGCTCCTGAAGCACGAGCCTTCACCTGGAAAAGTCATCCTTACTTCTGCTGATGGCTCAGCTGTCAATCAACTGCTTTTTGCATCACCTGAACTAGCTGGTCAGCAGATACAGTTTGTCACAGAGGGTCCAGACCAAAGTCCTCTTAAACCAGTAGTAGagtattgtgttgtgtgtggagACAAGGCCTCTGGTCGTCACTATGGGGCAGTTAGCTGTGAAGGCTGTAAAGGCTTCTTTAAACGGAGCATCCGTAAGAATCTTGTGTACACGTGCCGTGGATCGGGCGAGTGTGTGATCAATAAGCATCATCGTAACCGCTGCCAGTACTGCAGACTGCAGCGCTGCATGGCGCTCGGCATGAAACAGGACTCTGTGCAGTGTGAAAGGAAGCCAGTAGAAGTGTCCAGAGAGAAGCCAGCGAACTGCGCCCCCTCTATTGAGAAAATCTACATCCGCAAGAACCTCTGCAGCCCTCTGGCAGCCATGCCTACCTTCGTCAGTGACAAAGAGAcagccagGTCTGCCAACCTGCTAGACACTAACATGCTCCTGAACATTCAGCAGTCTCTCTCCAAACTAGACAACACAATCTTCATCCCCTCCTCACCTGACCAGAATGATCCCTGTCAGGGTGATCTGAGCACTCTGGCCAATGTGGTCACATCTCTTGCCCAAATAAGCAAAAACCGTGAGGTGACGGACAGCAGCACTGACCTATCAGGAATGGAAACCATGAGCAATGAAGACAGTTCCATGACTGATGTCCAACCAGATGAGCAGAATTCAGGCGAGGTCACTCAGGATTACGACTCGCTGACAAAGGTGCTCCATCCAGATGAGGTCAGTGGAGAGGCTGTGGAGGGCAGTGTTGTAGAGGAGCAGAATGCAGCCCTGCTGGACCTAGACGGGCCACTGCTGTCTGAAATGCATGTACCTTTTAAGCTGATGATGCCCTTGcccatcccggaatttctgaaTCTAAACTACATCTGTGAGTCAGCATCTCGCCTGCTGTTTCTCTCCATGCACTGGGCACGCTCTATACCTGCCTTTCAGGCTCTCGGGCCAGAGAACGGGATCACACTAATAAAGGCTTGCTGGAACGAGCTGTTTGCTCTGGGCCTGGCTCAGTGTGCCCAAGTCATGAACGTGGAGACCATTCTCACAGCCATCGTCGGCCACCTACAGAGCAGTCTGGAGGAAGaAAAACTCTCTGCGGAGCGAGTGAAGCAGGTGATGGAGCACATCTGGAGAATGCAGGAGTTTTGCAACAGCATGAGTCGCGTGAACCCTGATGCCTATGAGTACGCCTACCTCAAAGCTGCTGTCCTCTTTAGCCCAGATTATGCTGGGATGGACAGTAGTCTTCAGATTGACCGATTTCAGGAGAAAGCCTACATGGAACTGCAGGACTATGTCAGCAGGGTGTATCCGGAGGACACATATCGTCTGTCTAAGCTGCTGCTACGCTTGCCTGCACTGCGTCTAATGAGCGCAGCTATAACCGAGGAGCTGTTCTTCGCTGGGTTAATTGGGAACGTCCAAATAGACAGCATTATTCCCTATATCCTAAAAATGGACTCCACTGACTACAACAGCCAGTCTGTCAGCATCACAGAGTGACTCCAGCCCTGGACACTCTTCATTAACAGCAACAGCAGTGCCCAAGCTATAGGACAGGACATTGCTGCCCTACATGTGACCTTTTGACCCTCAAAGgaccctcaaaaaaaaaaaaaaaaaagaagcagcagCTGGTGTGCACTTGGTCGTTTTAACGAGCGTGCTGTAAACGGGGCAGTGGGACTTTGTAATTagaactgttttttattttccattgctATAGGTATTTACTGCTCTTCATATTGGACGATGGATATTGTGAACTTCAGTTTGCTCATGATTTGGACTCTTGTTTTTATTAGCATTCCTCTGCTTATGAGTTGAAGACAAGAACCTGTAAAGGTGTGAGTGTAAAAGGATGACTATGGTGGCTTAAAGAGCATTGGAATGAATGCTGACTCCTTAATGTATGTACAGGaattatgtatataaatataataaatgtcaaCTCTCATGGAGAGAAGCGTAAA
>XM_022671372.1
ttctaaacttgTTCAAATGCTCCATATGAACCCATTCGTCATTGACTCTCTCTGGAGCGCCCTCTGGCGGTGTAACAGACCCGGAAAAGACTCCTGAGTTGGTGTTCTCCTCTCTGGAGataatctgtgtgtgtattttagcttagcttagctgacATTTAGCTAACACGATTATCCTTTCTGCTGAATAAACAATCAAATATAGCCTGCTAGTTTTATCTATGGTTCGTTTATAAGAAACCCCCTCGACTATATACAAGTATGAACGTATCGATGCGCTTTTAGTAGTTAGCTAATATTAGACCCGTGGTGTTAGacgctaagctagctaaaactGGCTAGGTTAGATAGCTTGCTAACTAAGCTAACTGACGGCTAACGAGTGTCTGCGGATCTCCGCGTCCCAACACTAACCGCAGCGTTCTTTTAGCTAATTTTCTCATAAAAACGAAAACTAACAAACCAACACAGATTCGGGTGGTGTAGgtgtgtggaagtgtgtgcgtgcatgcatCACATGGGGAGTAGTATTTGAGCCAAAGAAGGGTGGGATCAGTACCATGGCAGGAGAAAGTCCCAGAATTCAGTTGGTGTCAGCAGATGGAGGCCTACAGatTGTGACAGATCAGCAGTTGGGCCAGAAGGTACAGATAGTAACGGCGTATGACCAGACGGGCACCGGCAAGCAGCAGTTCATATTAGCCAACGTAGATTATCCCAGTCAGGATAAACTGCTCCTGAAGCACGAGCCTTCACCTGGAAAAGTCATCCTTACTTCTGCTGATGGCTCAGCTGTCAATCAACTGCTTTTTGCATCACCTGAACTAGCTGGTCAGCAGATACAGTTTGTCACAGAGGGTCCAGACCAAAGTCCTCTTAAACCAGTAGTAGagtattgtgttgtgtgtggagACAAGGCCTCTGGTCGTCACTATGGGGCAGTTAGCTGTGAAGGCTGTAAAGGCTTCTTTAAACGGAGCATCCGTAAGAATCTTGTGTACACGTGCCGTGGATCGGGCGAGTGTGTGATCAATAAGCATCATCGTAACCGCTGCCAGTACTGCAGACTGCAGCGCTGCATGGCGCTCGGCATGAAACAGGACTCTGTGCAGTGTGAAAGGAAGCCAGTAGAAGTGTCCAGAGAGAAGCCAGCGAACTGCGCCCCCTCTATTGAGAAAATCTACATCCGCAAGAACCTCTGCAGCCCTCTGGCAGCCATGCCTACCTTCGTCAGTGACAAAGAGAcagccagGTCTGCCAACCTGCTAGACACTAACATGCTCCTGAACATTCAGCAGTCTCTCTCCAAACTAGACAACACAATCTTCATCCCCTCCTCACCTGACCAGAATGATCCCTGTCAGGGTGATCTGAGCACTCTGGCCAATGTGGTCACATCTCTTGCCCAAATAAGCAAAAACCGTGAGGTGACGGACAGCAGCACTGACCTATCAGGAATGGAAACCATGAGCAATGAAGACAGTTCCATGACTGATGTCCAACCAGATGAGCAGAATTCAGGCGAGGTCACTCAGGATTACGACTCGCTGACAAAGGTGCTCCATCCAGATGAGGTCAGTGGAGAGGCTGTGGAGGGCAGTGTTGTAGAGGAGCAGAATGCAGCCCTGCTGGACCTAGACGGGCCACTGCTGTCTGAAATGCATGTACCTTTTAAGCTGATGATGCCCTTGcccatcccggaatttctgaaTCTAAACTACATCTGTGAGTCAGCATCTCGCCTGCTGTTTCTCTCCATGCACTGGGCACGCTCTATACCTGCCTTTCAGGCTCTCGGGCCAGAGAACGGGATCACACTAATAAAGGCTTGCTGGAACGAGCTGTTTGCTCTGGGCCTGGCTCAGTGTGCCCAAGTCATGAACGTGGAGACCATTCTCACAGCCATCGTCGGCCACCTACAGAGCAGTCTGGAGGAAGaAAAACTCTCTGCGGAGCGAGTGAAGCAGGTGATGGAGCACATCTGGAGAATGCAGGAGTTTTGCAACAGCATGAGTCGCGTGAACCCTGATGCCTATGAGTACGCCTACCTCAAAGCTGCTGTCCTCTTTAGCCCAGATTATGCTGGGATGGACAGTAGTCTTCAGATTGACCGATTTCAGGAGAAAGCCTACATGGAACTGCAGGACTATGTCAGCAGGGTGTATCCGGAGGACACATATCGTCTGTCTAAGCTGCTGCTACGCTTGCCTGCACTGCGTCTAATGAGCGCAGCTATAACCGAGGAGCTGTTCTTCGCTGGGTTAATTGGGAACGTCCAAATAGACAGCATTATTCCCTATATCCTAAAAATGGACTCCACTGACTACAACAGCCAGTCTGTCAGCATCACAGAGTGACTCCAGCCCTGGACACTCTTCATTAACAGCAACAGCAGTGCCCAAGCTATAGGACAGGACATTGCTGCCCTACATGTGACCTTTTGACCCTCAAAGgaccctcaaaaaaaaaaaaaaaaaagaagcagcagCTGGTGTGCACTTGGTCGTTTTAACGAGCGTGCTGTAAACGGGGCAGTGGGACTTTGTAATTagaactgttttttattttccattgctATAGGTATTTACTGCTCTTCATATTGGACGATGGATATTGTGAACTTCAGTTTGCTCATGATTTGGACTCTTGTTTTTATTAGCATTCCTCTGCTTATGAGTTGAAGACAAGAACCTGTAAAGGTGTGAGTGTAAAAGGATGACTATGGTGGCTTAAAGAGCATTGGAATGAATGCTGACTCCTTAATGTATGTACAGGaattatgtatataaatataataaatgtcaaCTCTCATGGAGAGAAGCGTAAA
>XM_022671373.1
tttctaaacttgTTCAAATGCTCCATATGAACCCATTCGTCATTGACTCTCTCTGGAGCGCCCTCTGGCGGTGTAACAGACCCGGAAAAGACTCCTGAGTTGGTGTTCTCCTCTCTGGAGataatctgtgtgtgtattttagcttagcttagctgacATTTAGCTAACACGATTATCCTTTCTGCTGAATAAACAATCAAATATAGCCTGCTAGTTTTATCTATGGTTCGTTTATAAGAAACCCCCTCGACTATATACAAGTATGAACGTATCGATGCGCTTTTAGTAGTTAGCTAATATTAGACCCGTGGTGTTAGacgctaagctagctaaaactGGCTAGGTTAGATAGCTTGCTAACTAAGCTAACTGACGGCTAACGAGTGTCTGCGGATCTCCGCGTCCCAACACTAACCGCAGCGTTCTTTTAGCTAATTTTCTCATAAAAACGAAAACTAACAAACCAACACAGATTCGGGTGGTGTAGgaccgcctcaGGAAACGAAGACCAGGAGTTAGACCCTGTAGCTcgatacactatattgccaaaagtgtgtggaagtgtgtgcgtgcatgcatCACATGGGGAGTAGTATTTGAGCCAAAGAAGGGTGGGATCAGTACCATGGCAGGAGAAAGTCCCAGAATTCAGTTGGTGTCAGCAGATGGAGGCCTACAGatTGTGACAGATCAGCAGTTGGGCCAGAAGGTACAGATAGTAACGGCGTATGACCAGACGGGCACCGGCAAGCAGCAGTTCATATTAGCCAACGTAGATTATCCCAGTCAGGATAAACTGCTCCTGAAGCACGAGCCTTCACCTGGAAAAGTCATCCTTACTTCTGCTGATGGCTCAGCTGTCAATCAACTGCTTTTTGCATCACCTGAACTAGCTGGTCAGCAGATACAGTTTGTCACAGAGGGTCCAGACCAAAGTCCTCTTAAACCAGTAGTAGagtattgtgttgtgtgtggagACAAGGCCTCTGGTCGTCACTATGGGGCAGTTAGCTGTGAAGGCTGTAAAGGCTTCTTTAAACGGAGCATCCGTAAGAATCTTGTGTACACGTGCCGTGGATCGGGCGAGTGTGTGATCAATAAGCATCATCGTAACCGCTGCCAGTACTGCAGACTGCAGCGCTGCATGGCGCTCGGCATGAAACAGGACTCTGTGCAGTGTGAAAGGAAGCCAGTAGAAGTGTCCAGAGAGAAGCCAGCGAACTGCGCCCCCTCTATTGAGAAAATCTACATCCGCAAGAACCTCTGCAGCCCTCTGGCAGCCATGCCTACCTTCGTCAGTGACAAAGAGAcagccagGTCTGCCAACCTGCTAGACACTAACATGCTCCTGAACATTCAGCAGTCTCTCTCCAAACTAGACAACACAATCTTCATCCCCTCCTCACCTGACCAGAATGATCCCTGTCAGGGTGATCTGAGCACTCTGGCCAATGTGGTCACATCTCTTGCCCAAATAAGCAAAAACCGTGAGGTGACGGACAGCAGCACTGACCTATCAGGAATGGAAACCATGAGCAATGAAGACAGTTCCATGACTGATGTCCAACCAGATGAGCAGAATTCAGGCGAGGTCACTCAGGATTACGACTCGCTGACAAAGGTGCTCCATCCAGATGAGGTCAGTGGAGAGGCTGTGGAGGGCAGTGTTGTAGAGGAGCAGAATGCAGCCCTGCTGGACCTAGACGGGCCACTGCTGTCTGAAATGCATGTACCTTTTAAGCTGATGATGCCCTTGcccatcccggaatttctgaaTCTAAACTACATCTGTGAGTCAGCATCTCGCCTGCTGTTTCTCTCCATGCACTGGGCACGCTCTATACCTGCCTTTCAGGCTCTCGGGCCAGAGAACGGGATCACACTAATAAAGGCTTGCTGGAACGAGCTGTTTGCTCTGGGCCTGGCTCAGTGTGCCCAAGTCATGAACGTGGAGACCATTCTCACAGCCATCGTCGGCCACCTACAGAGCAGTCTGGAGGAAGaAAAACTCTCTGCGGAGCGAGTGAAGCAGGTGATGGAGCACATCTGGAGAATGCAGGAGTTTTGCAACAGCATGAGTCGCGTGAACCCTGATGCCTATGAGTACGCCTACCTCAAAGCTGCTGTCCTCTTTAGCCCAGATTATGCTGGGATGGACAGTAGTCTTCAGATTGACCGATTTCAGGAGAAAGCCTACATGGAACTGCAGGACTATGTCAGCAGGGTGTATCCGGAGGACACATATCGTCTGTCTAAGCTGCTGCTACGCTTGCCTGCACTGCGTCTAATGAGCGCAGCTATAACCGAGGAGCTGTTCTTCGCTGGGTTAATTGGGAACGTCCAAATAGACAGCATTATTCCCTATATCCTAAAAATGGACTCCACTGACTACAACAGCCAGTCTGTCAGCATCACAGAGTGACTCCAGCCCTGGACACTCTTCATTAACAGCAACAGCAGTGCCCAAGCTATAGGACAGGACATTGCTGCCCTACATGTGACCTTTTGACCCTCAAAGgaccctcaaaaaaaaaaaaaaaaaagaagcagcagCTGGTGTGCACTTGGTCGTTTTAACGAGCGTGCTGTAAACGGGGCAGTGGGACTTTGTAATTagaactgttttttattttccattgctATAGGTATTTACTGCTCTTCATATTGGACGATGGATATTGTGAACTTCAGTTTGCTCATGATTTGGACTCTTGTTTTTATTAGCATTCCTCTGCTTATGAGTTGAAGACAAGAACCTGTAAAGGTGTGAGTGTAAAAGGATGACTATGGTGGCTTAAAGAGCATTGGAATGAATGCTGACTCCTTAATGTATGTACAGGaattatgtatataaatataataaatgtcaaCTCTCATGGAGAGAAGCGTAAA

Function

symbol description
nr2c1 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human NR2C1 (nuclear receptor subfamily 2 group C member 1).

NR:

description
PREDICTED: nuclear receptor subfamily 2 group C member 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08543 NR2C1, TR2; testicular receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671371.1 False 2821 mRNA 0.48 14 13544952 13557590
XM_022671372.1 False 2827 mRNA 0.48 14 13546940 13557590
XM_022671373.1 True 2892 mRNA 0.48 15 13546939 13557590

Neighbor

gene id symbol gene type direction distance location
fgd6 NA coding upstream 5902 13507378 ~ 13539050 (+)
usp44 usp44,LOC107755158,LOC107748469,LOC107667716,LOC107597009 coding upstream 99280 13433569 ~ 13445672 (+)
LOC103026035 NA coding upstream 148689 13386538 ~ 13396263 (+)
LOC103036201 NA coding upstream 163037 13369680 ~ 13381915 (+)
st8sia1 st8sia1,LOC107755164,LOC107748471,LOC107567669,LOC108279455,LOC108279490 coding upstream 241840 13271177 ~ 13303112 (+)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding downstream 3846 13561436 ~ 13565100 (+)
tmcc3 tmcc3 coding downstream 34022 13591612 ~ 13633235 (+)
rbm17 rbm17,LOC107748463,LOC107755150,LOC107663450 coding downstream 200738 13758328 ~ 13773588 (+)
pfkfb3 pfkfb3 coding downstream 228656 13786246 ~ 13806954 (+)
itih5 itih5 coding downstream 457526 14015116 ~ 14042802 (+)
G63755 NA non-coding upstream 1441 13542613 ~ 13543511 (+)
G63756 NA non-coding upstream 2951 13541161 ~ 13542001 (+)
G63738 NA non-coding upstream 35355 13451746 ~ 13509597 (+)
G63749 vezt,LOC107567659,LOC107667718 non-coding upstream 57334 13486399 ~ 13487618 (+)
G63743 NA non-coding upstream 69532 13472434 ~ 13475420 (+)
G63791 NA non-coding downstream 16130 13573720 ~ 13677259 (+)
G63813 NA non-coding downstream 154319 13711909 ~ 13713440 (+)
G63827 NA non-coding downstream 197275 13754865 ~ 13755370 (+)
G63978 NA non-coding downstream 825292 14382882 ~ 14383150 (+)
G63979 NA non-coding downstream 875381 14432971 ~ 14433787 (+)
LOC111192955 NA other upstream 383585 13156226 ~ 13161367 (+)
G63432 NA other upstream 1076050 12468050 ~ 12468902 (+)
G63051 NA other upstream 3894865 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 4104388 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 5004829 8526218 ~ 8540123 (+)
gata3 gata3,LOC107555822 other downstream 609639 14167229 ~ 14242234 (+)
G64015 NA other downstream 1187145 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 2837736 16395326 ~ 16426623 (+)
G64289 NA other downstream 2881630 16439220 ~ 16442449 (+)
G64431 NA other downstream 3195453 16753043 ~ 16753560 (+)

Expression


Co-expression Network