sfmbt2 (sfmbt2)


Basic Information

Item Value
gene id sfmbt2
gene name sfmbt2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13922539 ~ 13997493 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671385.1
aGTGCTGTTAAAGCGCAGCGGCGCGGCACATGCGCACGCGCGGGATGCCATATTGGACGGAGGAGCTGCGCGAGCGGCCCGGTGGGAGCGGAGACCCGGGCAGGCAGCTAACTCACTGTGAGCAGACGCAACTGGAAACTACAGCTTACCAACATAGCAGCCTTTACACCACTGCAAAATGATGACATCAGCAGGTGGGAAGATCCAGAGCCCAACCAATGGCAGAGCAGAACCGGGTCTCTCAGatgtgGAATGTGGAGAGATGGATATGGACTTTAACTGGGATGAGTATTTGGAGGAGTTGGGAGCTACAGCAGCCCCCCACACATCATTCAAACATGTGGAGATCAGTCTTCAGAGCAGCTTCCAGCCCGGAATGAAGCTGGAAGTAGCCAATAAAAGCTGTCCAGACACTTACTGGGTGGCAACCATCATAACCACATGCGGACAGCTGCTGTTATTGCGATACTGTGGTTACGGGGATGATCGAAAAGCAGACTTCTGGTGTGATGTCATGGCTGCTGAGCTTCACCCTGTGGGCTGGTGCACCCAGAACAACAAACGACTGCAGCCGCCTGAAGCTATTAAAGAAAAGCACAGTGACTGGACTGAGTTCCTCATTAAAGAGCTCACTGGATCACGGACAGCACCGGCCAACCTGCTCGaaggaCCCCTGAGGGGTAAGAACACAGTGGATTTGATTGTATCCGGGTGTGTGTTGGAGATTCGTGATGCTAGTGAGCCGTGTGTGTACTGGGCTGCGAGGGTCCTGCGTAATGTCGGTGGGCGACTGTGCCTCAGCTACGTCGGCCTGGATGACCCTGCCCACTGCATCTGGATCTTCTACCTGGACActaggctccgccccctgggctGGACCAAAGAGAATCAGCTCTCAGTGGAGCCCCCTAAAGAGCTGCGGGACCTGAGGAGCGCTGTGGAGTGGAGTGAGGCTTTAGAGAAGGCCACCTCTGAAGCCATGAAGAACCCCCTGCCCCTGGAGGTCTTTAAGGACCACGCTGATTTGCATAAGCACTCCTTCACAACAGGTATGAAGCTGGAGATGGTAACACCTGGAGAACCATTCCACATCTGCCCTGTATCTGTCACTAAaGCCTACAATGAGTACTTCTTCCAGGTCACCGTGGATGACCTCACGCCAGAGGCCACGCCCTGCTCTGTAGTGTGCCATGCTGATTCGCCGGGCATTCTGCCAGTGCAGTGGTGTCTGAAGAACGGGGTCGGGCTGGAGAAACCCAGAGGTTGTCAGTCTGGGGATTTTGACTGGGCTGATTATCTGAAGTATTCTGGTACTGAAGCTGCTCCAGAGGCCTGCTTTCCTAATgcGTCTGTCAGCAGAGGGTTCTGTAAGGATACCTGGTTGGAGGCGGTGAATCCTCTAAACCCAGCAGAACTCTGCGTTGCCCGCATCACTCAGGTCAAAGGTCGCCTGCTCTGGCTCAGATTAGAAGgaCTGTCTAAGCCTCTGTCAGAGTGTATAGTGGATGTGGAGAGTATGGATATATTTCCTGTGGGTTGGTGTGAAGCTAACGGCTATCCGCTGACGGCCATAAAGAAAACCATCTGTCAGTCTCAGAAGAAGATCGCTGTGGTTCAGCCAGAGAAACAGTTGGCTCCTTCACCTGTAGAAAATGGCCCTCCTGACCTTTGCCGGTCTGTTGCAATGGACACAGCCTCTGTGAATGGAAAGTACTGCTGTTCGCACATCTTCGTGAATCATCGTTGTTTTTCTGGCCCGTATCTCAACAAGGGCAGAATCGCTGAGCTGCCTCAGACGGTTGGGCCTGGAAAGTGCACACTCGTCCTTAAAGAGGTCCTGACAATGTTAATAAACTCCGCCTATAAGCCGGGTCGTGTTCTCAGAGAGCTGCAGATGGTGGAAAATCCGAAGTGGAACTGTTTAGAGGAGACGCTAAAAGCCAAGTATAAAGGGAAGAGTTACCGTGCCAGCGTGCGGATCGTGCGATTGGCTGAGCAGGTGTCGGAGTTCTgccggagtgtgtgtgtgaggctgcaGTGCTGCCCAAACCTTTTCGGCCCGACGCTCATCTCCGACCACTGCCCCGAGAACTGCTCCACACACACCAAGACCAAatacacGTATCACTATGGTAAGAGGCGGAGAGTGGGACGTCCCAGTCTGGGGGACACGGTGCAGGACGGAGACTCGGCCAAATCCTCACGCTGCAAGAAAAAACGCAAGACCATCTTTGTCCAGAAGAAACGGCGCTCCTCTGTAGCAGCATACAACGGAGAATCACCACAGGACAGTGATTATTTCTATGATGTTGATGATATTGATGATTCGGTGAGTGAAGAAGGCTCCAGCTCAGAGACGCATGAGGAAGCCCATCACCATTCGTACCTGCATGTATCCAGGAGAGGCAGGCCACGCCGCTCAGTCACCCAGCGCAGGATTACACACCCCGGGACCTCTGAGCACCCACCACTGCGAAGAACCACACGCtcacactcctacacacacaaccagcccaccagacacacacacacaaagactaATCATATAGAAGAGGAAGAGGGTCGGCTGGTTTTGGAGAGGAATCCTCTGGAGTGGAGTGTTTCTGACGTGGTCGACTTCATCACATCCACCGACTGTGCCTCACTTGCTAAGATATTCCAGgagcagGACATTGATGGCCAGGCTCTGTTGCTGTTGACCCTTCCCACCGTCCAGGAGTGTATGGATCTGAAACTGGGTCCTGCCATAAAACTCTGCCACCAGATTGAACGTGTCAAAGTGGCCTTCTATTCCCAGTATGCTAACTAAGGCTAACATGCCTATTCAGGCTAACTGGGCCAGTTCTAATAGAGGCCTTTCTCTCAGTGGACAAAGAAAAACTTGACGAATTCTCCTCAGGGCCTTCATACAGAGCTCCAGACCTTCAGGAAGAGTGGAAAGATTTTCAGCCAACCCGCCTTTTCAGGCTTCTCCTGGACTGATGTTTTATGCTGAAGTACACAATGGATGTTTGCTGAACATTCAAAACtttgtgtttgatgttttgtGGAACTTATTCGATGGGGAAGAAGTGGAGCAGGACTTTTGGACGACATCCAGGGAATATCcagtgcataaaaaaaactttccaggCATCGGAGGGTTAATTATCTTGTCTGTTAAAGGATGATCAGGTTCATCTGTGATTGTTAAAATCCTTGTGACAGAAAAGACACACCTCTACTACTGTGTTAAATGTTCAAAATGTTACTTTTTGTTGTTCAGAGACcaaatgattatatttatagAGATAATTAGATTTGGAGAATCAgtgtataaagtaaaataatatattggaaatatttattttggcctctctctcagactctggaaGCTCTCATGTTAGTTCATGTCTTCAGATTGGCAGGATACTTTCATTCATACAGCAATCGTTATTTCCACCACTTTGTTGCCGGACACTTTTTTAATctatgcaaaaacaaaacaaaggaaaaaaaaacacagaacattcaTGGTGAATTGTTTTCTACTCCTTTGCTGTTAGACCTGATATGATCATTCTGTAAATAGCTTGTGTATAGAATGTATTAACTGATAGTAAAATCTAGTTTTAATACAACCCACACAA

Function

symbol description
sfmbt2 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SFMBT2 (Scm like with four mbt domains 2).

NR:

description
scm-like with four MBT domains protein 2 isoform X5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671385.1 True 3629 mRNA 0.50 21 13922539 13997493

Neighbor

gene id symbol gene type direction distance location
LOC103038708 NA coding downstream 167057 13712234 ~ 13755482 (-)
LOC103026945 LOC108427039 coding downstream 229689 13646396 ~ 13692850 (-)
vezt vezt coding downstream 415245 13474323 ~ 13507294 (-)
LOC103026355 metap2,metap2a,LOC107755160,LOC107689230,LOC107597011 coding downstream 453463 13452956 ~ 13469076 (-)
depdc4 LOC108427048 coding downstream 489607 13423638 ~ 13432932 (-)
kin kin coding upstream 82796 14080289 ~ 14089552 (-)
snd1 snd1,LOC107738807,LOC107732977 coding upstream 1273370 15270863 ~ 15554632 (-)
LOC103045938 LOC108432519 coding upstream 1581381 15578874 ~ 15624348 (-)
akap14 NA coding upstream 1928053 15925546 ~ 15927271 (-)
LOC111192960 NA coding upstream 2350066 16347559 ~ 16351713 (-)
G63852 rbm17,LOC107755150,LOC107748463 non-coding downstream 153488 13764764 ~ 13769051 (-)
G63849 NA non-coding downstream 162536 13758263 ~ 13760003 (-)
G63830 NA non-coding downstream 360445 13561359 ~ 13562094 (-)
G63773 NA non-coding downstream 378971 13542626 ~ 13543568 (-)
G63766 NA non-coding downstream 474740 13444767 ~ 13447799 (-)
G63939 atp5c1,LOC107675979 non-coding upstream 92886 14090379 ~ 14093476 (-)
G63947 taf3,LOC107555823,LOC107748456,LOC107675973 non-coding upstream 194195 14191688 ~ 14196509 (-)
G63955 gata3 non-coding upstream 228772 14226265 ~ 14227320 (-)
G63963 NA non-coding upstream 269912 14267405 ~ 14267758 (-)
G63993 NA non-coding upstream 476532 14474025 ~ 14474408 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other downstream 34671 13841193 ~ 13887868 (-)
LOC103025415 iqsec3,LOC107689235 other downstream 895041 12805971 ~ 13027498 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other downstream 1421876 12365468 ~ 12500663 (-)
G63516 NA other downstream 1541983 12320555 ~ 12380556 (-)
G63217 NA other downstream 3511308 10314799 ~ 10411231 (-)
G64034 NA other upstream 787828 14785321 ~ 14786149 (-)
LOC111192906 NA other upstream 992736 14990229 ~ 14992730 (-)
G64060 NA other upstream 996671 14994164 ~ 14994832 (-)
LOC103027187 NA other upstream 1673813 15671306 ~ 15867795 (-)
G64387 NA other upstream 2587572 16585065 ~ 16585647 (-)

Expression


Co-expression Network