LOC111192957


Basic Information

Item Value
gene id LOC111192957
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14721032 ~ 14727355 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671389.1
aaagcgCGCCTATTCTTACTTTAAAACAAACAGAGCTTAAAACAGTACCGTGATTAGGTGGCTACAGAAGCAATGAGTATTTTACGAAGAttaatgaaaaatgtttatgtaagaaaaaacaaaaaaacatcttataACCTGATCAGATGGatgcaaaatgaaaaattacTAAAACGCAAACTAAAATGCAAGAGGTGTAACAAGAGGATGAGGATGGTACATTCCCACTGTGCTGACAATTTTATATGGGAGTGTCGAAGGCGGCATTGTGGAAGGTTGAAGAGAAGTGTGAGAGCCGAGTCGCTCTTCTCAGGTTCCCACAGTGACCTTTTTACATGGATGAAATACATACATAGgtTCTCACAAGGCTTACAAATGCGACAGGTGGACATGATCCAAGATGGAATAACAAAGAGCACCAGGACCCTCTCTATGATGTCCAACAAACTCAAGCAAATGTGCGTCAAAAGTCTGCGAAAGTTTCGCAAAAAGAAAGGACAGAAAGTGGGGGGAGCTGACATCATTGTTCAGATTGATGAGAGCAAGTTCTGCCACAAGCGAAAGTATGGCAAAGGTCGCTATGGAAACActtggaggaggaagagaacGTGGGTATTTGGAATGCTTGAAATAAGGCCACACCTCAAGCGTCCCATACTCCGCCTGgtcaaaaaaagagacaaaaacacactgatcCCGATCATCAGAAAACATGTTAAGCCTACGACTCTTGTAGTAAGCGATGACTGGAGAGCTTACTCAAGCCTAAAAGAGGAAGGATATCGGCATGTAAGGGTTAACCACAGTCAAAACTACATCGACCCGATTTCAGGTCTGCACACACAAAACATCGAGAGGGCATGGCAGACATACAAAAAGGAGGTTTGGCATATGAGAGCCAACAGGTCTGAGAAATCTTTAAGAAAGCATCTCTGCTTCATAGAGTGGACATACTGGTTGGGCAGAATGCACAAATATGGGGTGCTTGGTAGACTTTTTAAAGACATCAGATGTGCATAGAGCAAAAAGGTAATTCAGTATActgtttttgatatttcagtaatgtgtatgttttgttttattggctGTTTGACCTGTAATTctgaaatggtttaaaaatgactgtagtaatgtgattatatatatatatgtttttttgtttgttttttttttggtgtgtgtttataatctttattcagaactttatacccctctagcccacacctggcattaaatGGTTCCAATAGCTTTGTTTATTAATCTGCCCTAGGGAGATATATATTGTTGGCATTACTTCTCTAAGGGGACTAAACAAgttaatgttaaagttaaagttaatgaCCTGTTAAACGGTCACTTCTTTCAGACATTTTTATTCACAATTACCTGGAAAAATGTTTCATATAACATTTGTGTTTATgtgaaaaaatgtgtaataaaaccTCTTCTTTTTCAAATCCCTTGTACTTATTCCTCATTGCATATCTATGGTAATGTAATGGACATGAAGCTGAGAGTCAACTGACATGCAGTTGACACAAAGAAGTTATTTAACTTAGTTAAAGTTGACCATCATGGTTttactttacttggatggtccaaatgatgattaaaatacatgtaaaaggTGAGTCCTTGACTTTCAACATATATTCAGCATATACGCAACTTAGTGAAATATAAACTAAGTTGAGAGTCAACTGACATGCAGTTGACACAAAGAAGTTATTTAGCTTAGTTAAAGTTGACCATCATGGTTttactttacttggatggtccaaatgatgattaaaatacatttaaaaggtGAGTCCTTGACTTTCAACATATATTCAGCATATACGCAACATAGTGTTCAAACAAACTCAATTGAGGGTCAACTGACATGCAGTTGACAGTCTATGTTTTAATTGCACTAATTGTTGTTGGGTGGTGCAAAACATAGAGATGTCATGTTACACTAAGGTGCCTATCAGTAGATAAATCTTTGCTAGATGTAGTTGAgaatttactttttatgttgttGATATGCAGTTGACACGTTGTTGAGATGCAGATGACACTCACCTGATCATCTATATGATATAATGTGATGCCACTATTGACAGAGGAACTTGATATTCATGGAACAGTTCAGTGAC
>XM_022671390.1
CATCATTGCATTCAGTTTTTATTCACAATTTGTTtagtgtcccaacttttttggaatccggtttgtgtatatatatatttttcctgaaACACAGAACTGCATACCCTACTCCATACGGTACTCTAATATGATAGGACATAAATTTTTCTACCTTTTGCAACAATTTGTTTGCCAGGGAGTGTCGAAGGCGGCATTGTGGAAGGTTGAAGAGAAGTGTGAGAGCCGAGTCGCTCTTCTCAGGTTCCCACAGTGACCTTTTTACATGGATGAAATACATACATAGgtTCTCACAAGGCTTACAAATGCGACAGGTGGACATGATCCAAGATGGAATAACAAAGAGCACCAGGACCCTCTCTATGATGTCCAACAAACTCAAGCAAATGTGCGTCAAAAGTCTGCGAAAGTTTCGCAAAAAGAAAGGACAGAAAGTGGGGGGAGCTGACATCATTGTTCAGATTGATGAGAGCAAGTTCTGCCACAAGCGAAAGTATGGCAAAGGTCGCTATGGAAACActtggaggaggaagagaacGTGGGTATTTGGAATGCTTGAAATAAGGCCACACCTCAAGCGTCCCATACTCCGCCTGgtcaaaaaaagagacaaaaacacactgatcCCGATCATCAGAAAACATGTTAAGCCTACGACTCTTGTAGTAAGCGATGACTGGAGAGCTTACTCAAGCCTAAAAGAGGAAGGATATCGGCATGTAAGGGTTAACCACAGTCAAAACTACATCGACCCGATTTCAGGTCTGCACACACAAAACATCGAGAGGGCATGGCAGACATACAAAAAGGAGGTTTGGCATATGAGAGCCAACAGGTCTGAGAAATCTTTAAGAAAGCATCTCTGCTTCATAGAGTGGACATACTGGTTGGGCAGAATGCACAAATATGGGGTGCTTGGTAGACTTTTTAAAGACATCAGATGTGCATAGAGCAAAAAGGTAATTCAGTATActgtttttgatatttcagtaatgtgtatgttttgttttattggctGTTTGACCTGTAATTctgaaatggtttaaaaatgactgtagtaatgtgattatatatatatatgtttttttgtttgttttttttttggtgtgtgtttataatctttattcagaactttatacccctctagcccacacctggcattaaatGGTTCCAATAGCTTTGTTTATTAATCTGCCCTAGGGAGATATATATTGTTGGCATTACTTCTCTAAGGGGACTAAACAAgttaatgttaaagttaaagttaatgaCCTGTTAAACGGTCACTTCTTTCAGACATTTTTATTCACAATTACCTGGAAAAATGTTTCATATAACATTTGTGTTTATgtgaaaaaatgtgtaataaaaccTCTTCTTTTTCAAATCCCTTGTACTTATTCCTCATTGCATATCTATGGTAATGTAATGGACATGAAGCTGAGAGTCAACTGACATGCAGTTGACACAAAGAAGTTATTTAACTTAGTTAAAGTTGACCATCATGGTTttactttacttggatggtccaaatgatgattaaaatacatgtaaaaggTGAGTCCTTGACTTTCAACATATATTCAGCATATACGCAACTTAGTGAAATATAAACTAAGTTGAGAGTCAACTGACATGCAGTTGACACAAAGAAGTTATTTAGCTTAGTTAAAGTTGACCATCATGGTTttactttacttggatggtccaaatgatgattaaaatacatttaaaaggtGAGTCCTTGACTTTCAACATATATTCAGCATATACGCAACATAGTGTTCAAACAAACTCAATTGAGGGTCAACTGACATGCAGTTGACAGTCTATGTTTTAATTGCACTAATTGTTGTTGGGTGGTGCAAAACATAGAGATGTCATGTTACACTAAGGTGCCTATCAGTAGATAAATCTTTGCTAGATGTAGTTGAgaatttactttttatgttgttGATATGCAGTTGACACGTTGTTGAGATGCAGATGACACTCACCTGATCATCTATATGATATAATGTGATGCCACTATTGACAGAGGAACTTGATATTCATGGAACAGTTCAGTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671389.1 True 2141 mRNA 0.37 4 14721032 14727355
XM_022671390.1 False 2068 mRNA 0.37 3 14722914 14727355

Neighbor

gene id symbol gene type direction distance location
taf3 taf3,LOC107748456,LOC107555823,LOC107675973 coding upstream 524486 14102939 ~ 14196546 (+)
atp5c1 atp5c1,LOC107728502,LOC107748457 coding upstream 622486 14090332 ~ 14098546 (+)
itih2 itih2,LOC107748478,LOC107666937 coding upstream 639919 14056785 ~ 14081113 (+)
itih5 itih5 coding upstream 678230 14015116 ~ 14042802 (+)
pfkfb3 pfkfb3 coding upstream 914078 13786246 ~ 13806954 (+)
fam200b NA coding downstream 269763 14997118 ~ 15000582 (+)
LOC103045633 lrrc4.1,LOC108432552,LOC107699068,LOC107557314,LOC107732976,LOC105904105 coding downstream 694646 15422001 ~ 15426787 (+)
LOC111192874 NA coding downstream 836662 15564017 ~ 15571205 (+)
ccdc87 NA coding downstream 1176987 15904342 ~ 15923062 (+)
LOC103046551 LOC108432559 coding downstream 1196371 15923726 ~ 15953932 (+)
G63992 NA non-coding upstream 246633 14474026 ~ 14474399 (+)
G63979 NA non-coding upstream 287245 14432971 ~ 14433787 (+)
G63978 NA non-coding upstream 337882 14382882 ~ 14383150 (+)
G63827 NA non-coding upstream 965662 13754865 ~ 13755370 (+)
G63813 NA non-coding upstream 1007592 13711909 ~ 13713440 (+)
G64022 NA non-coding downstream 57554 14784909 ~ 14859165 (+)
G64047 NA non-coding downstream 225380 14952735 ~ 14958268 (+)
G64057 NA non-coding downstream 263848 14991203 ~ 14992008 (+)
G64067 NA non-coding downstream 277657 15005012 ~ 15035836 (+)
G64083 NA non-coding downstream 329776 15057131 ~ 15057391 (+)
gata3 gata3,LOC107555822 other upstream 478798 14167229 ~ 14242234 (+)
LOC111192955 NA other upstream 1559665 13156226 ~ 13161367 (+)
G63432 NA other upstream 2252130 12468050 ~ 12468902 (+)
G63051 NA other upstream 5070945 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 5280468 9431499 ~ 9440564 (+)
G64015 NA other downstream 17380 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 1667971 16395326 ~ 16426623 (+)
G64289 NA other downstream 1711865 16439220 ~ 16442449 (+)
G64431 NA other downstream 2025688 16753043 ~ 16753560 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other downstream 2105935 16833290 ~ 16888195 (+)

Expression


Co-expression Network