snd1 (snd1,LOC107738807,LOC107732977)


Basic Information

Item Value
gene id snd1
gene name snd1,LOC107738807,LOC107732977
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15270863 ~ 15554632 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671391.1
GCTGTGACCCGGGAAGAGCTTCTCTGTGACTCGTACATCCCTCGCATGGTTCCGGTTAAGCGAGCGTGATCCGCCGTGCTCAGACTCTTTTCTCTCGTTTTACCAAAACAGCCGCAGCAGACCCGCGCGCCCCTCCTGATTCAGCAGCCCCTGAACGGACACCTTCAACCCCGCGGACATGGCGACTCCCGTCTCTGGCTCAGTTCAGTCCAACCCGGCTCCAGCTCCGGCGCTGCAGAGAGGAATAGTGAAGATGGTCTTATCCGGATGTGCCATCATTGTAAGAGGCCAGCCACGAGGTGGTCCTCCCCCAGAGCGACAGATCAACCTCAGCAATGTCCGTGCTGGTGCCCTCGCCCGCCGTGCCATCCAGAACCAGCCTGAGACTAAGGACACACCTGATGAGCCCTGGGCTTTCCAGGCTCGAGAGTTCCTACGCAAAAAGATGATTGGAAAAGAGGTGTGCTTCACTGTGGAGATCAAAACCCAGCAGGGCAGAGAGTATGGCATGGTGTATCTGGGAAAAgATACATCAGGAGAGAACATTGCTGAGTCGTTGGTTTCTGAGGGACTTGCCACAGTCCGCAGAGAGGGTATCAGAGGCAACAAtCCTGATCAGGCCAGACTGTGTGATTTGGAAGACCAGGCAAAGTCCTCAAAGAAGGGTATGTGGTCCGAGGGTGGAGGGTCGCACACAATTCGGGACCTGAAGTACAGTATCGAGAACCCCCGCAACTTTGTGGACTCCTTGCATCAAAAACCGGTCAACGCTATTATCGAGCATGTTCGAGATGGCAGTGTTGTGCGAGCACTCTTGTTACCCGACTACTACCTGGTCACAGTGATGCTGTCTGGAATAAAGTGCCCAACATTTAAACGGGAAGCTGATGGGGCAGAAACTCCTGAGCCGTTTGCAGCAGAGGCAAAGTTCTTCACTGAGTCCCGGCTACTTCAGAGAGACGTGCAGATCATTCTGGAGTCTTGTCCCAACCAAATTATCCTGGGCACCATCCTCCACCCGAATGGAAACATCACAGAGCTGTTGCTGAAGGATGGCTTTGCACGCTGTGTTGACTGGTCTATGGCAGTGTACACCCAGGGGGCAGAGAAACTGCGGGCAGCAGAACGCTCAGCAAAAGAGCGTAAAGTAAGGATCTGGAAAGACTATGTTGCTCCCACTGCTAACCTGGACCAGAAGGACAGACAGTTTGTGGCAAAGgtGATGCAGGTGGTGAATGCAGATGCCATTGTTGTGAAGCTGAACTCTGGCGAATACAAGACCATCCACCTATCCAGCATCCGGCCCCCGAGGAATGAGGGCGAGGAGAAGAACAAGGACAAGGACAAGCGCTTCCGTCCACTGTACGACATTCCTTACATGTTCGAGGCCAGAGAATTCCTGAGAAAGAAGCTGATTGGAAAGAAGGTCAACGTCACTGTAGATTACATCAGAGCTGCCACCACTGCTGCAGAAACTGGCCCCGTCCCTGCTTTCCCAGAGCGCACCTGTGCCACGGTCACCATCGGAGGAATaaATATTGCTGAAGCTCTGGTCAGTAAAGGCCTTGCTACATGCATCAGATATCGGCAGGATGATGATCAGAGGTCCTCTCACTATGATGAGCTGCTGGCTGCAGAGGCACGGGCCATCAAGAACGGGAAAGGACTTCACAGCAAGAAGGAGGTCCCCATTCACAGAGTTGCCGACATCTCTGGgGAGACCCAGAAAGCCAAGCAGTTCCTGCCGTTCCTGCAGAGAGCAGGCCGTTCGGAGGCGGTGGTCGAGTACGTGTTCAGCGGCTCCAGACTGAAGCTGTACATGCCCAAAGAGACGTGCCTAATCACCTTCCTCCTCGCCGgaATCGAGTGTCCACGAGGCTCCCGAAACATTCCCGGTGGAACGGCGGAGCCCTTCAGTGAGGAGGCCACACTGTTCACCAAGGAGCTGGTACTGCAGAGAGAGgtggaggtggaggtagAGAGCATGGATAAAGCAGGGAACTTCATAGGCTGGCTTCACATCGAGGGAGTGAATCTGTCTGTGGCTCTGGTGGAGAACTCCCTCTCTAAGGTCCACTTCACAGCCGAGCGCAGCTCCTACTACAAGACCCTGCAGTCGGCCGAGGAGGTGGCCAGGCAGAGGAAAGAcaagCTCTGGGCCAATTATGAGGAGAAGCCAACAGAAGAGGTGGCCCAGGTATCAGAAGAGAAGGAGCGCGTGGCCAACTACAGGGCTGTGTACGTCACCGAGATCACAGACGGACTGCACTTCTACACACAGGATGTGGAAACAGGAGCCCAGCTGGAGAACCTGATGGAGACCATGCGGGCAGAGATCGCAGCTCAGCCACCTGTGGAGGGGTCTTTCACCCCGCACAGAGGAGACTACTGCATGGCCAAGTTTGCTGACGGAGAATGGTACAGAGCTCGTGTGGAGAAGGTTGAATCCCCAGCAAAGGTTCATGTGTTCTACATCGACTATGGCAACAGAGAAGTGTTGTCTTCGGTGCGTCTCGCCACTCTTCCTCCTGCCTTCAGCACTCGGGCCCTGCCTGCTCAGGCCACAGAGTATGCCTTTGCCTTCATCCAGGTCTCGCAGGATGAGGATGCCCGGGCTGATGCAGTGGACTGCATTGTGAAGGACATTCAGAACACACAGTGTCTGCTGAACGTAGAGTACAGCGGCGCTTCCTGCCCACACGTCACCCTGCAGTTCACAGACTCCAAAGACGATGTGGGTCTGGGCCTGGTCAAAGAGGGGCTTGTGATGGTAGATGTCCGCAAGGAGAAACACCTGCAGAAAATGGTGACCGAGTATCTAAATGGCCAGGAGTCTGCGAAGAGTGCCAGACTCAACATTTGGCGCTACGGAGACTTCCGTGCCGATGACGCAGATGAGTTTGGCTACAGGCGCTGAGTTCCTGCCATTCCAAAGACCTTGTGGAAGATAAGATGCATccgcagagagaaagaggaaaaagaatCTAAACATCACAAGCAAGCGTTAATATggctctcttttattttttggtaatATCGCAACATTCATCTCTCTCGGTCTTCTTTGACACTCTGTGCATTTCCCCTCTTCTCCCCAAggttttttcccccattttttttttcctttccttttttttctttttaaaaagagaGCAGGGCTACAGGTGAATTCACTTGTAGATACTTAAAATAGGACCAACGTACCGTGACATTTTAGCCAATCATCGTTTCCATTTTCATTTTAGCCAAACAAACTGTTTaaccaaacacaccaaacagcCAAACTCTTTGTAGTTCTGCTCCAGCCTGAGCTCCACTTCAGAGGGCGGAGCTTTCAGAAGGGTGGGGTCTGCACAGAGGACTCATGAACTCGACAGCTTCCTGAGAAAACGCTTCCTTAATCATGAGAAAAGttctatatttaaatgtatatggaTATTATTTTGATGCTAGATAAGTGCACTCGAAGTGAAACTAAcgagtgtgttttttaaatgtatgagtGTTTGACCTTTCTGGACTTTTGTGCAAGGAGTGTGttttttctcgctctctctctctttgtggcACAAAGAAAAGCTGCCAACGCCTTGACAAGCATTCATTCTACTCCTCTGGGATGTTTACATATAACGGTCATTTCTTTGTCTTctcctctctgtctcgctctcctGCCATAGCAGAAACAACAGTGTTTGAATTATTTTCCTTCCAAGGTAGACCCTGTCATTGTATTTAAATCTGCTGAATAAAAATGAGCAAAGTCTTCGTT

Function

symbol description
snd1 Predicted to enable RNA binding activity and nuclease activity. Predicted to be involved in RNA catabolic process. Predicted to act upstream of or within gene silencing by RNA. Located in cytoplasm. Orthologous to human SND1 (staphylococcal nuclease and tudor domain containing 1).

NR:

description
PREDICTED: staphylococcal nuclease domain-containing protein 1

GO:

id name namespace
GO:0031047 gene silencing by RNA biological_process
GO:0016442 RISC complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004518 nuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15979 SND1; staphylococcal nuclease domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671391.1 True 3772 mRNA 0.51 24 15270863 15554632

Neighbor

gene id symbol gene type direction distance location
kin kin coding downstream 1181311 14080289 ~ 14089552 (-)
sfmbt2 sfmbt2 coding downstream 1273370 13922539 ~ 13997493 (-)
LOC103038708 NA coding downstream 1515381 13712234 ~ 13755482 (-)
LOC103026945 LOC108427039 coding downstream 1578013 13646396 ~ 13692850 (-)
vezt vezt coding downstream 1763569 13474323 ~ 13507294 (-)
LOC103045938 LOC108432519 coding upstream 24242 15578874 ~ 15624348 (-)
akap14 NA coding upstream 370914 15925546 ~ 15927271 (-)
LOC111192960 NA coding upstream 792927 16347559 ~ 16351713 (-)
scaf11 NA coding upstream 876668 16431300 ~ 16450766 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding upstream 905108 16459740 ~ 16469357 (-)
G64085 NA non-coding downstream 211220 15058374 ~ 15059643 (-)
G64064 NA non-coding downstream 266986 15003669 ~ 15003877 (-)
G64063 NA non-coding downstream 270838 14999809 ~ 15000025 (-)
G64054 NA non-coding downstream 290906 14979722 ~ 14979957 (-)
G64048 NA non-coding downstream 313456 14884012 ~ 14957407 (-)
G64156 NA non-coding upstream 110544 15665176 ~ 15668027 (-)
LOC111192959 NA non-coding upstream 335790 15890422 ~ 15907327 (-)
G64214 NA non-coding upstream 406306 15960938 ~ 15961286 (-)
G64247 nrcam non-coding upstream 545791 16100423 ~ 16105219 (-)
G64273 NA non-coding upstream 586024 16140656 ~ 16141428 (-)
G64060 NA other downstream 276031 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 278133 14990229 ~ 14992730 (-)
G64034 NA other downstream 484714 14785321 ~ 14786149 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other downstream 1382995 13841193 ~ 13887868 (-)
LOC103025415 iqsec3,LOC107689235 other downstream 2243365 12805971 ~ 13027498 (-)
LOC103027187 NA other upstream 116674 15671306 ~ 15867795 (-)
G64387 NA other upstream 1030433 16585065 ~ 16585647 (-)
G64492 NA other upstream 1327703 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 1980664 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 2124182 17678814 ~ 17689312 (-)

Expression


Co-expression Network