LOC103027800 (LOC108432561)


Basic Information

Item Value
gene id LOC103027800
gene name LOC108432561
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15998201 ~ 16101524 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671398.1
acacacacaccgcacacacgcacacagtgGCAGTATCACAGGATTGTAGAGCCAGAGGGAATGGTTAGAGAGAAACCCACACGCCGGATACACACGCAGACCGCGAGCGGACCCTCATTAACTCAGCTCAGGAGAAGcAGGTGAGTTGAGGACGTCCTGTACATGTGAGTGCTCACTCTGAGTGTGCACAGCAGGGCTACGTTGCGTTGACACGGAGGGGAAGCGTTTCCCTGTGATACACCCACCATGAACTGGAAAAGAAAATCCACACTCTGTGAAGGAGCGgtgatgatgctgctgctgggTCACATGACCACCGCCTTAGATGTGCCTCTGGACCCTAAAGTTCTGGAGGGATTGCCGCAGCCACCCACTATAACCCACCAATCCCCCAAGGATTACATCATTGACCCCCGGGAGAACATTGTCATCCACTGTGAAGCAAAAGGAAAGCCGCATCCCAGCTTTTCCTGGACGCGCAACGGCTCTCATTTTGATGTGGAGAAAGACCCTAAGGTGTTCACCAAGCCCAACTCAGGCACCCTGGTGATAGACATCAGCGAGGAGAAAGCTGAGGCATATGAGGGAGTGTATCAGTGCACAGTGAGGAACGAACACGGAACTGCAGTCTCCAACAACATTGTTATACGCCAGTCCAAGTCCCCCTTGTGGTCAAAGGAGAGAAATGAGCCAGTCACAGTGCAGGTGGgtgtgtctctgattttgcactGCAGACCCCCAATGGGCCTCCCCCCACCTATCATCTTCTGGATGGACAACAATTTTCAGCGGCTGCCTCAGAACAGCCGCGTGTCTCAGGCACTTAATGGAGACCTGTACTTCTCTAATGTGCTGGTGGAGGACACCAGAAACGACTACATCTGCTATGCTCGATTTCCTCACACTCAAACCATCCAGCAGAAGCAGCCCATAACAGTCAATGTTCTGGATGTTGATGCAATGAATGAGACAGTCTTGGCAGCTATTTTGAATGACACAGATATTTTGGGTGATCGCCCGGCAGCAGAGCGGACACCCTCCTTCATGCACCCAACTGGACCCAACAGTACGTCTATGGTCCTGAGAGGTGAAACTCTGGAGCTGGAGTGCATTGCAGATGGTCTACCGACCCCAGAAATCTCCTGGACTAGAGTGAGTGGGGATCTGCCAGGTGACAGGTTCTCCTTCCAGAAGTTCCAGAAAATGCTGAAGATTATTGAGGTGACGGAGGCAGATGCAGGAGACTACCGCTGCCTGGCCAGAAACCGCCTAGGCAGTGCTCAGCACATCATCACTGTGGTGGTCAAAGCGGCTCCATTTTGGATCAGTGCTCCCCGGAACCTCATCCTGGCACCCAAAGAGACAGGGATGCTCATTTGCCATGTGGGGGGCAACCCCAAACCCACCATCACCTGGTCTGTTAACGGTGTTCCCATAGAGAATTCACCCAATGATCCTAGTCGGAAAGTAGAGGACAACAAAATCATCCTGAGTGATGTGCAGGCTGGGTCTAGTGCCGTCTACCAGTGCAATGCATCCAACGAGTTTGGCTACCTGCTAGCCAACGCCTTTGTCAATGTACTTGCTGAGCCTCCGAGGGTGCTGACGCCTCCAAACAATTTGTACCAGGTGATCAGCAATAGGCAAGCCATGCTGGATTGTGCCTCTTTTGGGTCACCTATTCCGAAGATCACTTGGTTTAAAGATGGCCAGACTGCTATACTAGATGGGGATTCCTATGTTCTGCATGAGAACGGGTCCTTACAGATAAACCCAGCACAGCCTCTGAACAGTGGAAAGTACACCTGTGTGGCTACAAATACCTTGGGCAACAAAGAAAACCATGTCTTCCTGGAAGTGAAAGAACCCACACGGATCCTGAAGCAGCCCGAGTATAAAGTGGTGCAGAGGGGCAGCAGAGCTGTGTTTGAGTGTAAAGTGAAGCATGATCCCAGTCTAATACCTACACTCACCTGGCTCAAGGATAACGGGGAGCTGCCTGATGATGAGCGctTTGTGGTGGACTCGGACAGTCTGACTATAATTGATGTAGCAGAGGAGGATGAAGGCACCTACACGTGCATCATGAACACCACTCTGGACAAGGACTCAGCCAGTGCCAGGCTCACTGTAGTCGAAGCCACTCCAACTCCACCTATAGTCTACGAGCGTCCGGACCCTCCAAGAGACCTAGAACTGACTGACCAACGGGAGCAGAGTGTGCAGCTGACCTGGATCCCTGGTGATGAACACAACAGCCCCACTCAGTTGTTTCTGGTCCAGTACGAGGACTCTCTGCATCAGCCAGGGGTGTGGCACAATATGACTGAGGCTCCAGGTACAAGCGCCACGGCCCAGCTGGATCTCTCCCCGTATGTGTACTACTCCTTCAGGGTGTTGGCACTCAATGATGTGGGCATGAGTGAACCCAGTACCCCCTCTAGACAGTACCGCACCAACCCCTCTCAGCCTGATGATAATCCATCAGATGTTGAAGTAGCTGGAACAGAACCGAACAATCTGGTGATATCATGGAAGGAGCTAACAGGGCTGCAGTCTAACGGCCCCGGGCTTCAGTATAAGGTGAGCTGGAGACAGAAGGAGACAGAAGAAGACTGGACGTCTGTCATTGTGGCTAACGTCTCCCAGTATGTGGTAACAGGGGCACCCACTTTCATCCCATACGAGGTCACCGTGCAGGCCTTTAATGACTATGGGCATGGCCCCAAGCCAGGGGTGGTGTTTGGATACTCAGGAGAGGACCGACCCATGGTGGCTCCAGAGAACGTGAAGGTTCTGGTACAGAGCAGCACAATGGCTGAGGTGCACTGGGAGCCCATTCCTCCATCTGCAGTGAGGGGAAGAATGCTGGGATATAAGGTATCCTACTGGAAAGAGAAGAGTTTGCAGAAGGAAGACTCCAGaccaaaagagaaaaaggagcTCACTTTCAGTGGAAATGAGACGGAAGGCCGTCTCCCCGACCTTCACCCCTACAGTCAATACAGCGTTAATGTCAGGGCCTTTAATGGGAAGGGAGATGGACCTGCCAATGACGATCTGAAATTTGAGACTCCAGAGGGAGTCCCTGGAGCTCCTGCTTTCCTCAGAATTATAGATCTCAATCTGGATTCGTTAACGGTGGAGTGGGGTCCTCCTGAGGATGAATATGGCCGTCTTACTGGCTACACCCTCAAATACCAGCCCATTAATAGCACAGATGAGCTAAAAGAGATGACCCTTCTAGCTAATGAGACGAGCATCAGTCTTGAAAATCTCAAGTACAGTACACGCTACATGTTCTACCTTAGCGCCATGACAATCAAAGGCTCAGGACCTGTTGTGACGACAGCGATCACAATCGTGGATGAAGCGTTAGTACGGCCCGCAGTAGAGACGGGTAAAGGCACTGAATCCCCTTCACATCCAATATCCCCCGTTACTCAGTCTGTGCAGCCCCCATTTTACAAGGCGCGTCCAGTAGGCCCGGTGTTCAGGAACGTGAACTACTCCTTGGAGGAAGACCACGCCATAATAAACTGGGAATACACTGGGGAAGAAAACAATGTATATGTGGAATATATGTTAGACAACAGTAAAGAAGCCTGGAAAAGGGAGGCTGTAAACGCCTCCCGAACATATCAGTTAAAGAATCTAAAGGCGGGCGTGGTCTATAAGGTGCGCGTGGTGGCCAATAACCATGCAGATCTGACGGTGCACAGCACGGAGGAGCTGCTGATTACGGTTCCAGCTATGGCCAGCAGACAGGTGGATATAGCCACACAAGGCTGGTTCATTGGTCTGATGTGTGCCATCGCACTGTTGATCCTGGTCCTCCTCATCGTCTGCTTCATCAAGAGGAACAAAGGAGGCAAATATCCTGtgaaagaaaaagaagaagctcATCAGGATCCAGAGATCCAGCCTATGAAAGAGGATGATGGCACTTTTGGAGAATACAGTGACACGGAGGACCACAAGCCCCTGAAGGGCAGCCGGACCCCGTCCAACGGCACGGTGAAGAAGGACGATAGTGACGACAGCCTGGTGGACTACGGCGAGGGAGGCGATGGCCAGTTCAACGAGGATGGATCCTTCATTGGCCAGTACAGCGGGAAGAAGGAGAAGGACACACAGGAAGGCAACGAAAGTTCGGAGGCTCCGTCTCCTGTCAATGCCATGAACTCCTTCGTGTGACAGGCCTTGAAAACCTTTGGTCGTGGACCCCCGCCAACAACCCCCATCTCCTACCCCACCCCATACAGTCTCGTTACACTTCTTTCATCTGGAGAGCAGACTTTCCCTACTTCACTGTGACCCTCCTGACATCACATGGCCACCATAAACGAACGAAACCGACAAACAGCAACCCACTCATAAGcatcagacagagagatagagagagaaaaagtgagagagcaaagcagatagagagagagtgagggaaacagagagaaagcaaTACACACAGGAGGAATGTACCGTAACCAGCAGACCAGCCCTCCACCTGGTCTCCTCGGCTAGTCAGCGGCGTGAATGCAGGAGGACCTTAATGTGATAACTGCTGTATTATCTTTTTGcaaacgtatatatatatatatatagatatatatatgaatatatagaaattatatacacataaatgAGAATTCTATTTTCTGAACATGGGTTCTTGGGTTTGCAGTCAGTCAGTAGGCCACCATCTCGCTCCGCCTGCCCACCCGCCCCCTCTTGTGCTATGCATTCACTGCATGGACTGACTCAGTGctaccacacacctcacactctgTGCTCTGTGAATCAGTGGGTCAGCGTGAGCTAGCGTTATAAAAAGCTTTCGGACCAGTGTCTAGTGGACGCTCACGCTTCGCATCACAGCTGCCTTCTTCAGTTCCCTCGTCGACAGTGTTGAAACCGGTATTGTACACGCTAAAAAAACGGCACCAATGTCTTTTGTGGACATTGTTGtgttaaactgtttttatttgacGTCTTTTGTGCCAGACTGGAGCTGCAGTATAAAGATGAACAAACTGGATATTTGGGGgtcaatatgataaaaaaaatt

Function

NR:

description
PREDICTED: neuronal cell adhesion molecule-like isoform X2

GO: NA

KEGG:

id description
K06756 NRCAM; neuronal cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671398.1 True 5068 mRNA 0.51 33 15998201 16101524

Neighbor

gene id symbol gene type direction distance location
LOC103046551 LOC108432559 coding upstream 44269 15923726 ~ 15953932 (+)
ccdc87 NA coding upstream 75139 15904342 ~ 15923062 (+)
LOC111192874 NA coding upstream 426996 15564017 ~ 15571205 (+)
LOC103045633 lrrc4.1,LOC108432552,LOC107699068,LOC107557314,LOC107732976,LOC105904105 coding upstream 571414 15422001 ~ 15426787 (+)
fam200b NA coding upstream 997619 14997118 ~ 15000582 (+)
LOC103046856 LOC108432562,LOC108279529,LOC107757284,LOC107581848 coding downstream 11335 16112859 ~ 16141399 (+)
LOC103047366 LOC108415391 coding downstream 117304 16218828 ~ 16314999 (+)
LOC103026270 zmp:0000000711,LOC108411497,LOC108275404 coding downstream 514047 16615571 ~ 16651658 (+)
LOC103042039 ern1,LOC102793659 coding downstream 615528 16717052 ~ 16764567 (+)
LOC103041732 NA coding downstream 666886 16768410 ~ 16779685 (+)
G64205 NA non-coding upstream 41985 15956009 ~ 15956216 (+)
G64159 NA non-coding upstream 248628 15745081 ~ 15749573 (+)
G64144 NA non-coding upstream 325269 15665168 ~ 15672932 (+)
G64141 NA non-coding upstream 368223 15626576 ~ 15629978 (+)
G64087 NA non-coding upstream 808232 15147026 ~ 15189969 (+)
G64233 NA non-coding downstream 42761 16144285 ~ 16144718 (+)
G64237 NA non-coding downstream 48244 16149768 ~ 16149974 (+)
G64279 NA non-coding downstream 65540 16167064 ~ 16167378 (+)
G64292 NA non-coding downstream 259379 16360903 ~ 16368394 (+)
G64291 NA non-coding downstream 276136 16377660 ~ 16432412 (+)
G64015 NA other upstream 1253119 14744735 ~ 14745082 (+)
gata3 gata3,LOC107555822 other upstream 1755967 14167229 ~ 14242234 (+)
LOC111192955 NA other upstream 2836834 13156226 ~ 13161367 (+)
G63432 NA other upstream 3529299 12468050 ~ 12468902 (+)
G63051 NA other upstream 6348114 9646579 ~ 9650087 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 293802 16395326 ~ 16426623 (+)
G64289 NA other downstream 337696 16439220 ~ 16442449 (+)
G64431 NA other downstream 651519 16753043 ~ 16753560 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other downstream 731766 16833290 ~ 16888195 (+)
G64449 NA other downstream 771563 16873087 ~ 16875941 (+)

Expression


Co-expression Network