LOC111192960


Basic Information

Item Value
gene id LOC111192960
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16347559 ~ 16351713 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671400.1
TCAAATCTCTGTTACTCCTAAACATATGATGTTGAAAGTTCAGATTGCTGTGGGTTCAGACAAGTTTTTTGTTTCAGCCCTTGTAGACTCGGGAGCAGCAGGGAACTTCATGGATGTGAATCTGGCCAAGCAACTGCAAGTACCACTTCAAGCCATGGTCACTCAGCTCAGGATCAAAGCCTTGGATGGACGACCACTGGGGCAAGGAACTGTTTCCAAAAGTACAGATGAACTGAATCTAGTCATATTCCTACAGTTACTGAGTGGAAGGAGAGGAGTGAACAAACCTGGGAGGAGGCTCATGTGCGGCTCCAGCGTGCTGTTCGCCGGATGAACACTCAGGCTGATCGAAGAAGAAGGGCAGCTCCAAATTTCCAAATTGGACAAAGGGTCTGGTTGTCTACAAgagatttgaaactgaaacttcccTCAAAGAAGTTAAGTCCTCGCTTTATAGGCCCCTTTAGAATTGTCAAACAGGTTACACCCGTGTCTTATCAGTTAGCCCTGCCAGCAAATTATCGTATTGCTCCCACTTTCCATGTCTCTCTGCTCAAAcctgtttcttcttctttacagaaccCAGGGTCAGTGACTGAGCCTCCGCCCCCGCTGGACATTGATGGTGCTCCCGCCTATAGTGTGAACTCTCTTTTGGACTCCAAGCTCCGTAGGGGTCGACTCTTCTATCTAGTggactgggagggttacggTCCGGAAGAACGGTCTTGGGTTCCAGCGTGTGACATCCTTGACCCTTCTTTGATATCTGATTTTCATAGGGATCATCCCAATCGGCCAGCTCCCAGACCCAGGGGTCGCCCCCGGCGTAGAGTTAGAGAGTCGGCGGGAGCCGACCGTCAGGAGGGGGGTGATGTCACGATTGACCCTGGCGGTTCGCCTCCCAGACACAGGAGGTCGCTCTCTCCTCAGTATTAACTTGCACACCTGTTTTGCTTCTGAtctaattctctctctatttaaggACACCGCACCTGAGCAGAGGTGCGAcgtcttgtttgttttctctacAGCATTTCGAAGCATTTCTTGTTATATCGTGTGAATTCTGGTTATACTGATCTTGTTCCGTTTTTTGACTTCGATTTTTGGATTTCCCTTGCCGGATTTGTTTGCCTGGTTATTTTTTGTGACTATTATTAATAAACCTGCGTTTGGAT
>XM_022671401.1
AGTTTTTGTCGCAGTTCAAAGCAGTGTTTGATCACCCGGCCGCCGGAAAAGAGGTGGGCTTAAGACTGTGCGAGCTCAGACAAGGCACCCGTTCTGCGGCTAGTTACGCCCTAGATTTTCGCACGCTCGCAGCCGGCAGTGGGTGGAGCGAACCCGCGCTGCTCACTGTGTTTCAGCGAGGGTTAAGGGAGGACCTTCAGGCTGAACTCGTTTTTCGCGGGCAGGAACTGACTCTGGATCAGTTCATTCAGACAGCCATTTCCATGGACAATTTGCTGCGAGGCAAACGCAGACTAACACGTGAGCCGAGACCACTCACCAGCGCCAGCCTCTCCACCCCCGCCCCCCAGTGTGAAGCAGAGCCCATGCAGCTGGGAAGAGCACGCCTCACTCCAGAGGAGAAGCTCCGCCAACGCAGGCAAGGTCTATGTTTATACTGCGGCCATGCCGGCCATATCTGCGCTTCCTGCCCCGTCCGTCCCAGTGCTACTGGGGCGGCAGAGCCCTTGTAGACTCGGGAGCAGCAGGGAACTTCATGGATGTGAATCTGGCCAAGCAACTGCAAGTACCACTTCAAGCCATGGTCACTCAGCTCAGGATCAAAGCCTTGGATGGACGACCACTGGGGCAAGGAACTGTTTCCAAAAGTACAGATGAACTGaaccCAGGGTCAGTGACTGAGCCTCCGCCCCCGCTGGACATTGATGGTGCTCCCGCCTATAGTGTGAACTCTCTTTTGGACTCCAAGCTCCGTAGGGGTCGACTCTTCTATCTAGTggactgggagggttacggTCCGGAAGAACGGTCTTGGGTTCCAGCGTGTGACATCCTTGACCCTTCTTTGATATCTGATTTTCATAGGGATCATCCCAATCGGCCAGCTCCCAGACCCAGGGGTCGCCCCCGGCGTAGAGTTAGAGAGTCGGCGGGAGCCGACCGTCAGGAGGGGGGTGATGTCACGATTGACCCTGGCGGTTCGCCTCCCAGACACAGGAGGTCGCTCTCTCCTCAGTATTAACTTGCACACCTGTTTTGCTTCTGAtctaattctctctctatttaaggACACCGCACCTGAGCAGAGGTGCGAcgtcttgtttgttttctctacAGCATTTCGAAGCATTTCTTGTTATATCGTGTGAATTCTGGTTATACTGATCTTGTTCCGTTTTTTGACTTCGATTTTTGGATTTCCCTTGCCGGATTTGTTTGCCTGGTTATTTTTTGTGACTATTATTAATAAACCTGCGTTTGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671400.1 False 1181 mRNA 0.48 2 16347559 16351199
XM_022671401.1 True 1263 mRNA 0.54 3 16347559 16351713

Neighbor

gene id symbol gene type direction distance location
akap14 NA coding downstream 420288 15925546 ~ 15927271 (-)
LOC103045938 LOC108432519 coding downstream 723211 15578874 ~ 15624348 (-)
snd1 snd1,LOC107738807,LOC107732977 coding downstream 792927 15270863 ~ 15554632 (-)
kin kin coding downstream 2258007 14080289 ~ 14089552 (-)
sfmbt2 sfmbt2 coding downstream 2350066 13922539 ~ 13997493 (-)
scaf11 NA coding upstream 79587 16431300 ~ 16450766 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding upstream 108027 16459740 ~ 16469357 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding upstream 177492 16529205 ~ 16577816 (-)
LOC103027149 LOC103027149 coding upstream 302400 16654113 ~ 16660507 (-)
LOC111192875 LOC108437882 coding upstream 344368 16696081 ~ 16707075 (-)
G64320 pdzrn4,LOC107757222,LOC107581937,LOC107694264,LOC107725536,LOC107587183 non-coding downstream 53591 16293718 ~ 16293968 (-)
G64313 NA non-coding downstream 167105 16176513 ~ 16180454 (-)
G64280 NA non-coding downstream 180186 16167063 ~ 16167373 (-)
G64273 NA non-coding downstream 206131 16140656 ~ 16141428 (-)
G64247 nrcam non-coding downstream 242340 16100423 ~ 16105219 (-)
G64380 NA non-coding upstream 137796 16489509 ~ 16489931 (-)
G64382 NA non-coding upstream 157223 16508936 ~ 16514868 (-)
G64418 zmp:0000000711,LOC108411497 non-coding upstream 294465 16646178 ~ 16648622 (-)
G64422 NA non-coding upstream 313308 16665021 ~ 16667239 (-)
LOC111192962 NA non-coding upstream 360360 16712073 ~ 16714049 (-)
LOC103027187 NA other downstream 479764 15671306 ~ 15867795 (-)
G64060 NA other downstream 1352727 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 1354829 14990229 ~ 14992730 (-)
G64034 NA other downstream 1561410 14785321 ~ 14786149 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other downstream 2459691 13841193 ~ 13887868 (-)
G64387 NA other upstream 233352 16585065 ~ 16585647 (-)
G64492 NA other upstream 530622 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 1183583 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 1327101 17678814 ~ 17689312 (-)
G64886 NA other upstream 1576794 17928507 ~ 17931170 (-)

Expression


Co-expression Network