LOC103035087 (mafga,LOC107739593,LOC107556599,LOC107729585,LOC107701907)


Basic Information

Item Value
gene id LOC103035087
gene name mafga,LOC107739593,LOC107556599,LOC107729585,LOC107701907
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16783913 ~ 16811230 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671407.1
tctgctgctgctacaaCAGGCGCGAGCCGGAGCTCCTCCTCATTCAGACGCGGCACGCGGCGCCATCAGATCATCTTACGGGGCAGTACAGCACGGCTCTCGTGGCATGACTACTACAAACAAGGGAAATAAAGCACTGAAGgtgaAGAGGGAGCCGGGGGAGAATGGGACGAGTCTCACGGATGACGAGTTGGTGTCGATGTCTGTGCGGGAGCTGAACCAGCACCTCCGGGGTCTCACTAAAGAGGAGATCCTGCAGCTGAAGCAGCGTCGGCGCACGCTGAAGAACCGCGGGTACGCCGCCAGCTGCCGCGTGAAGCGGGTCACGCAGAaggaggagctggagaagcAGAAGGCGGAGCTtcagcaggaggtggagaagctTGCCTCCGAGAACGCCAGCATGAAGGTGGAGCTGGACGTCCTGCGCTCCAAGTACGAGGCCCTGCAGAGCTTCGCCAGGACTGTGGCCCGCAGCCCCATGAGCGCCGCCAGGGGCCCCATCACCTCCGTCATCGGGCCCCTCATACCGGGCAAGGTGGCGGCCACCAGCGTCATCACCATCGTCAAGTCTAAAACGCAGGCGCGGTCGTAATGCACGGGGGAATCCGGTCAGCGATTCACCATCAAGCACAGGTCTGAGGATCAGGAACGACTAAAGCACCGcaaattcttatttattttgcaattatatttctgtgtttcCTCTAACATTAGGATTTtttaa
>XM_022671408.1
TCTCGCTCTCgtgcacgcacgcacacacacacacacgcgcgcgccgAGACCGCCACTCTCTCTCCGGTGAGAGTGCAAGCACGCACGAGCTTTATGCTGAGTGTGCGTGTGCACGCGCCTGCCCGCGCGCGCCACCATCACAACCACCTCCCGTTCGTTCCCGGTGCGCGAGACTACTGTTGCTGCTGccgcttctgctgctgctacaaCAGGCGCGAGCCGGAGCTCCTCCTCATTCAGACGCGGCACGCGGCGCCATCAGTAGATCATCTTACGGGGCAGTACAGCACGGCTCTCGTGGCATGACTACTACAAACAAGGGAAATAAAGCACTGAAGgtgaAGAGGGAGCCGGGGGAGAATGGGACGAGTCTCACGGATGACGAGTTGGTGTCGATGTCTGTGCGGGAGCTGAACCAGCACCTCCGGGGTCTCACTAAAGAGGAGATCCTGCAGCTGAAGCAGCGTCGGCGCACGCTGAAGAACCGCGGGTACGCCGCCAGCTGCCGCGTGAAGCGGGTCACGCAGAaggaggagctggagaagcAGAAGGCGGAGCTtcagcaggaggtggagaagctTGCCTCCGAGAACGCCAGCATGAAGGTGGAGCTGGACGTCCTGCGCTCCAAGTACGAGGCCCTGCAGAGCTTCGCCAGGACTGTGGCCCGCAGCCCCATGAGCGCCGCCAGGGGCCCCATCACCTCCGTCATCGGGCCCCTCATACCGGGCAAGGTGGCGGCCACCAGCGTCATCACCATCGTCAAGTCTAAAACGCAGGCGCGGTCGTAATGCACGGGGGAATCCGGTCAGCGATTCACCATCAAGCACAGGTCTGAGGATCAGGAACGACTAAAGCACCGcaaattcttatttattttgcaattatatttctgtgtttcCTCTAACATTAGGATTTtttaa

Function

symbol description
mafga Enables protein heterodimerization activity. Contributes to DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within positive regulation of transcription, DNA-templated. Part of transcription regulator complex. Is expressed in brain and ventricular zone. Orthologous to human MAFG (MAF bZIP transcription factor G).

NR:

description
transcription factor MafG isoform X2

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K09037 MAFF_G_K; transcription factor MAFF/G/K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671407.1 False 727 mRNA 0.58 3 16784106 16811230
XM_022671408.1 True 923 mRNA 0.60 3 16783913 16811230

Neighbor

gene id symbol gene type direction distance location
LOC103041732 NA coding upstream 4228 16768410 ~ 16779685 (+)
LOC103042039 ern1,LOC102793659 coding upstream 19346 16717052 ~ 16764567 (+)
LOC103026270 zmp:0000000711,LOC108411497,LOC108275404 coding upstream 132255 16615571 ~ 16651658 (+)
LOC103047366 LOC108415391 coding upstream 468914 16218828 ~ 16314999 (+)
LOC103046856 LOC108432562,LOC108279529,LOC107757284,LOC107581848 coding upstream 642514 16112859 ~ 16141399 (+)
LOC111192909 si:ch73-374l24.1,LOC108437159,LOC108259727,LOC107556610,LOC107698783 coding downstream 497835 17309065 ~ 17556553 (+)
LOC111192910 cacng5b,LOC108437158,LOC107556612,LOC107698772,LOC107729207,LOC107664435 coding downstream 757569 17568799 ~ 17582128 (+)
LOC111192975 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding downstream 878976 17690206 ~ 17702915 (+)
LOC111192980 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding downstream 896740 17707970 ~ 17719858 (+)
LOC107197389 NA coding downstream 920864 17732094 ~ 17745773 (+)
G64427 NA non-coding upstream 1799 16727032 ~ 16782114 (+)
G64403 NA non-coding upstream 76817 16695940 ~ 16707096 (+)
G64393 NA non-coding upstream 174700 16608857 ~ 16609213 (+)
G64362 NA non-coding upstream 251130 16491186 ~ 16532783 (+)
G64291 NA non-coding upstream 351501 16377660 ~ 16432412 (+)
G64462 NA non-coding downstream 86320 16897550 ~ 16904677 (+)
G64509 NA non-coding downstream 141351 16952581 ~ 16952839 (+)
G64511 NA non-coding downstream 158306 16969536 ~ 16969896 (+)
G64513 NA non-coding downstream 192419 17003649 ~ 17003848 (+)
G64515 NA non-coding downstream 228737 17039967 ~ 17042012 (+)
G64431 NA other upstream 30353 16753043 ~ 16753560 (+)
G64289 NA other upstream 341464 16439220 ~ 16442449 (+)
arid2 arid2,LOC107707985,LOC107555896 other upstream 357290 16395326 ~ 16426623 (+)
G64015 NA other upstream 2038831 14744735 ~ 14745082 (+)
gata3 gata3,LOC107555822 other upstream 2541679 14167229 ~ 14242234 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other downstream 22060 16833290 ~ 16888195 (+)
G64449 NA other downstream 61857 16873087 ~ 16875941 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other downstream 878979 17690209 ~ 17719912 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 1744898 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 2411979 19223209 ~ 19278071 (+)

Expression


Co-expression Network