LOC107197347


Basic Information

Item Value
gene id LOC107197347
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18669432 ~ 18683116 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671412.1
CAGAACTGGTGGGAGAGATCGACCTGACATCCTGCCACAAAGTGACCGAATTCTCAGTCCAGACAAACTACGGCTTTCAGCTTCACAGTAATAAACTGGTTTATACTCTGGCTGCTATGAATGCTGGGATACGGCAGAACTGGATCCAGGCTCTCCTGGAGAAAATACAGAACCGGAACGCACCTGATGTTACCAGTGTTTCAGGTGATCAGGTGATTCTGCAGGCGAAGGCTCAGCGTGGTCCTGATGTGACTCAGGACTCGCggctcagctccagcagaagAGCCGGACCTGGTGCTGAAACATCAGACTGGACCGAGATCGGACAGATCGGACAGAACGGACATTCGGCGGCCCAGGAGGTGAACGGAGAACCGGAGCTGCAGGATCTCCAGCctgaggagcagcagcaggaggagccGGAGAACCGGATCCTGAACCGGAGCCGGAGGAGGCGGGAGGAGCGCCGGCAGAGGTACGAGTTAGTGATGGCATCTTCAGGACTTCCTGTGGAGGACAGGACCAGCCAGGATCATCAGGATCATCATGAGCAGAGGATGATGGAGATTGAGGAACGCTGGCTGCAGGTGGAGAAGATCTCCATCCGAGACGGGAAAAAGGTGCTGCTGTACCCAGAGAGCCAGAGCAGGAGCTCTGCAGATCTGGAGGACGTTGTAGAACAACACTATCAGAGAACGAACTCAACGAACAAAACTCTCGAAAGTCTCGAAATTCCATGTAAACCTCAGATGATGATCAGTCCAAACATGCAGAACCACATCTCAGCTCTGACTGACAAATATCTACAGACCAAACAGCTTCTTCAAATAGAGAATCTGAAACGACAACATCTCAAAACCCAGCTGAGCTCAGAGCTCGTAACTGAAGCAGAACTGAAGCCCGTCTGCAGGGCGTTGGGTTGCGAAGCGGCTTTAAGTGAATCCAGACTTGGATCGTATGGTTGGCGCGAGGCAAGCCAGGACCGGGAGGAGGAGCGAAGTGAGGCGAGGGTCGACGGGTTCAGCCGAGGAGATGCCGTGACGTTGCTGAGAAAACAAAACGTTGGTTCTGATCCAGCTGTGGTGGAACAGCTCGAGGCGGTGAATCGACACAATCAGGAGCTGTTGAATCAACTCGCTGAGGCCAATCGAGATATTGACCGACTTAAGGCAGAACTGATGTGCCGCCAAATGAATTGCAGCCAGCAGGGTTTGGAGTCTGTAGTGGAGAGTCTTAAGGTGGAATTGGCTGGGAACTCTCGGGAACTGGAGGTGGTGCAGAATCGTTTGGCAGAAGTGGAGGAGAATCTGAAGGAAGCTCAAAAAACCCTACAGTTAAGGGAAGCTACGCTTAAAAGCTTGGGATTCCTTGGTGAAGATAGTGATGATACTTTGCTTATCTTGTCTTCATCCTCAACATCAGACTCATCCTCAGAAGAACTGAGAAATAAGGAAATGTGTGAGCAGGATCTGGAGAACCATAATTTGGACCAAAATGTAGATCAGAATGCATTAATCAGAGAATCTACGCTTCTGAACAGTCCAAAAACAATGGCGGCTGAAGGTGATCAATGGGAAACGTTGGAAGTGTCAAACAATCAAGAGTTTCAAGATGTATGGAGATCATCGGATGGATTTCTGGAAGAGGATGTATCTGAGAAAATCGTTCAAATGAGGTCCAACAACCTCAAAATGCTACTAGAGATCATTAGACCTTTAACTAGGAATTGGCCCAATAGTGAGCAATATTCACTTTCAGATTCTGATGTTCTACAGTTGGAAAGGAACTTTTGGGATGGTTTAgtaaatgcattgaaaaaatacaatctaagcaaaagtattgggacagaaCAAGCTGGTTCTTTGGTACAATGTGTCCAAAAGAAACTGGACGAGATTAGAATGGACCTCCTAGCCCTTAGCATTAATGCTAATAATCCCCATTCCCAGAATAGTGATTTAGATCAACACAGTTCCAATACCTTTCCTAATTTGAATTACCTTTCCAACTTTGACAATACTGGTCTTCATAATGGTTCAATGGAAGACCACAGTGTACAGAAGTTTAGGACATTGCCTGTTGATGAGCATCTAGACAATCATCCAATTTGGAGAGGTCTGAAACATCACGTAGAGAAGAAAGTGGCACTGCTAAACCATGTAGAGTTGGCATCTAAGCTAGAGCCGTCAACAGGCAACAGTCCCACAAACTGGGCTGTCTGCAATCAAACAGAAGACTCATCAAAAGGTCTGGACCCATTGGTCAGTGCAGCTATGGACATCTTCCTGGCCTGTCTGGTTGGGTATCATGATGCTCAGAACCAGGAAAAGACAGTAAAGTCCATCGATGAGGATTTTAATAGCAATATAAAGGGTGTTGACCTCTATGAAGGAACGTTGGTGCAGCCAAACAATATGGCCACCCAGAAGAAGACTGGAGTCAACGAGGAGAAAGAGGCGGAAACGATGGACTCGTCAAAAAGTCGAATAAAAGAACTAGAGCACCAGTTATCCAGAAGTGAAGAGCTCATATCTTCTCTACAGCAGCAGCATGAGGAGGACCAGACCAACCTGAAGGCAGTATATGAACAGGGATTCACTATGCTGAAGAAGTCTCATCAGAAGCTTATAGAAGACCTTCTTCTCCAACACCAGCGAGAGCAACAGCGCCTAATGGAGGAGAAAGACAGACTTCTGGCTGAAGAGACGGCTGCTACCCGCACTGTGATTGCAGCTCTGAACAGAGCCCACAGCTCTGAGATGGAGAGAGTGCAGCAGAAGACGAACTGGGAGAAGAGTAATTGTGATGCCAATATTGCAGAGATACTTAAAAATCACAGagAAGAGCTGGCGTCGGTTCAGAGTGAGCTGGAGGTTCTCTCGGTTCAGTTTTCTCAGAAGTGTTTGGAGAGTGTTCACCTGGCTCAGGCTCTGGAGGCGGAGAGAAAAGCTCTACAGCACTGCCAGCACCAGAACCTAGCACTCAGTACCTGCAACCAGgatAAAAAGCTTGTTACAGAAGAATCCAGAGAACTACAGAGCGATCTCGGCGTGGTGAAGGAGAGGGCCGAGGAGCAGACGGGATATCTCAGGGAGAATCTGAGACTGGATTATGAGGCGTTATCAGAGTCTGAGGAAcagaaaacattattaaacagctGACATTAAACAGTGCAGTACATTTCTGTACATTAAACAgtatttacactatattttactatattttaccaCTGTAGCTGCTGTGTGGCTGTTAGTTATTTATCTATACAGATCTACATAAGCATTcaacagaatgaaaaaaaaatagtattttatttgtgtAGACTGCATTAATACATCTGACCATTACTGAACAAATAATGAGCTTTTATATCTCAACAATTAATACTGATATTGTGAATGGATGTCATATATGGTTgacatatgtatttattttatataaagatatttaaatatttagatcaACAACAAAGAAAGTTACTGTGAGCTATAGACAGGTTTTgtggtatttttattataagctagattaatatattttacaataaactgaaTT

Function

GO:

id name namespace
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component

KEGG:

id description
ko00350 Tyrosine metabolism
ko00965 Betalain biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671412.1 True 3552 mRNA 0.45 8 18669432 18683116

Neighbor

gene id symbol gene type direction distance location
LOC111192977 NA coding upstream 14743 18652128 ~ 18654689 (+)
LOC103027278 NA coding upstream 35189 18631412 ~ 18634243 (+)
LOC111192973 NA coding upstream 418081 18215692 ~ 18251351 (+)
LOC111192978 NA coding upstream 456356 18196755 ~ 18213076 (+)
LOC107197388 NA coding upstream 476262 18176227 ~ 18193170 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding downstream 4141 18687257 ~ 18706546 (+)
LOC111192965 LOC108435873 coding downstream 307401 18990517 ~ 19019268 (+)
LOC111192912 NA coding downstream 493886 19177002 ~ 19178587 (+)
LOC103043906 LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444 coding downstream 585306 19268422 ~ 19271847 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 603719 19286835 ~ 19305457 (+)
G64980 NA non-coding upstream 53274 18536667 ~ 18616158 (+)
G64991 NA non-coding upstream 99942 18567027 ~ 18569490 (+)
G64834 NA non-coding upstream 163705 18504951 ~ 18505727 (+)
G64816 NA non-coding upstream 245103 18402077 ~ 18424329 (+)
G65019 NA non-coding downstream 28498 18711614 ~ 18759292 (+)
G65044 NA non-coding downstream 109066 18792182 ~ 18840564 (+)
G65053 NA non-coding downstream 150843 18833959 ~ 18834854 (+)
G65116 NA non-coding downstream 218336 18901452 ~ 18908686 (+)
G65122 NA non-coding downstream 262210 18945326 ~ 19032751 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 45933 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 949520 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1781237 16833290 ~ 16888195 (+)
G64449 NA other upstream 1793491 16873087 ~ 16875941 (+)
G64431 NA other upstream 1915872 16753043 ~ 16753560 (+)
LOC103045528 NA other downstream 540093 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 593686 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 597176 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1097547 19780663 ~ 19794325 (+)
G65565 NA other downstream 2274019 20957135 ~ 20957635 (+)

Expression


Co-expression Network