LOC111192965 (LOC108435873)


Basic Information

Item Value
gene id LOC111192965
gene name LOC108435873
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18990517 ~ 19019268 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671417.1
GTTACAGACGGACAGAATGCTGGATTAACTGGTGCTGCGAGATTAAACTGGATTAACTGGTGATCACAGATTAATTTACAGTTTAAGATCTGATACGCTGAGCTGCAGTCATGGTGCAGAAATATCAGTCCCCAGTCAGAGTCTACAAATACCCCTTCGAGCTCATAATAGCCGCCTATCAGAGAAGATTCCCCACCAGTCCACTCATCCCCATCTTTGTGCACAGTGATGTTATTAGTGAGAGCAGTAGTGAGGACGGGGCGACCCATGTGATCGAGCGAAGGTGCACTCTGGATGTGGACGCTCCTCGACTGCTGAAACGGATAGCAGGAGTGGAGTATCTGTACTTCGTTCAGAAGAACACTCTGGACCGGCAGCAGAGAACTCTGCATATTGAAGCTTATAATGAGAGTTTCTCCAGCAGAGTGATGGTCAGAGAACACTGCAGCTACACGGTGCATCCAGAGAATGAGGACTGGACGTGTTTTGAGCAGTCGGCCAGCATGGACATGAAGTCTTTCTTCGGCTTTGAGAGCACAGCTGAGAAGATCGCCATGAGGCAGTACGCTGCCAGCATTAAAAAGGGGAAGGAGATAGTTGAGTATTATCTGAGAGAGCTGGAGGAAGAGGGGATAACCTTTATCCCATGCTGGATCCCTCCTTCAACCAGCACCAAACCCAGTTCAGCCCGACCCGTCCCCACCAGCCGAGCCCCCGGCCGAGCCCACAGCAGCCCCGCCGACGCTCTACCAGCATCTCCAGAAGATAAGTTAGATGCAGACTATATCCGGCGCTATCTGGGGGAATTGAACCCTCTGCAGGAGAGCTGCCTGATCCGACTGAGACAGTGGCTGCAGGAAACTCACAAGGGAAAGCTTCCTAAAGACCAGCATGTCCTGCGCTTCCTGCGGTCCCGCGACTTTAACCTGGAGAAAGCTCGGGAGGCGCTGTGCCAGACGCTCACCTGGAGGAAGCAGCACCAGGTGGACTTCCTGCTGGATACGTGGGCGTGTCCTCAACTGCTGCACGACTACTACGCTGGGGGATGGCACCATCACGATAAGGATGGTCGTCCTCTCTATATCCTGAGGCTGGGACAGATGGACACTAAAGGTCTGGTTCGGGCTTTAGGAGAGGAGTGTCTCCTCAGACATGTTCTGTCCATTAATGAGGAGGGTCTCCGGCGCTGTGAGGAGAACACCAAGCTCTTCGGTCGACCAATCAGctgctgGTCGTGTGTGGTGGATCTGGAGGGGTTAAATATGAGGCACTTGTGGAGGCCGGGGGTTAAAGCTCTGCTGAGGATTATTGAGGTGGTGGAGGTGAATTATCCCGAGACTCTGGGGCGGCTCCTGATCCTGAGAGCTCCCCGGGTTTTCCCCGTCCTCTGGACTCTGATCAGTCCGTTTATTGATGAGAACACCCGCAGGAAGTTCCTGATCTACGCAGGAAATGATTATCAGAGCTCGGGGGGGCTGCTGGATTAtatcagctcagagttcatcCCGGATTTCCTCGGGGGAGACGCTCAGTGTGACGTCCCCGAGGGCGGACTCGTCCCCAAGACGTTATATCACACCGCCGAGGAGCAGGAGAACCAAGAGCTCAAACTCTTCACGGATACAATCTACAAAACCGCCAGCGTGTTTAAAGGAGCTCCGCACGAGCTGCTGGTTGAGATCACGGAGTGCTCGTCTGTGATCACGTGGGATTTCGACGTGGTGAGAGGAGATATCATCTTCAGCATCTTCCACTCTAAACGAGCTCCTCAGCCTCCCAGGAGAGAGACCCTGCCCGGGCTGGGCGGGAACAACCAGCAGGTGATTGACAGGTCCTGGACACTGGGGCAGGACTTCAGCATGGTGGAAACGGCCCTAATCTGTAGAGAAGGAGAGAGTATACAGGGTTCTCATGTGACCCGCTGGCCCGGGTTCTATATTCTGCAGTGGCGTTTCCACAACACCCCGTCCTGCTCTGCGTCCACCCTGTCCCGAGTGGACGATGTCCTGGCCTCGCTGCAGGTCTCCTCCCACAAGTGCAAGATCATGTTCTACACCGAAGTGCTGCAATCCGCTGACTTCAGGGGTTCTATGAGCAGTCTGGCCTCCAGTCACAGTGGTTTCTCTCAGCTCAGTGGTgccaccacctcctccacccGCTCCAACTGCAGCTCCATCACCTCCAGATAGATCAGAAACACACGACCTGCCCTTTAATTACTCCCAAAAACCCCTAAACCCCTTAccttacacactgcacacagaatatttacatttatagatGTAATTCTAACATAAACCCAGATCATCTGTGTATTAAATCCACAAAAGTCA

Function

NR:

description
PREDICTED: SEC14-like protein 1 isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671417.1 True 2333 mRNA 0.53 16 18990517 19019268

Neighbor

gene id symbol gene type direction distance location
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding upstream 283971 18687257 ~ 18706546 (+)
LOC107197347 NA coding upstream 307401 18669432 ~ 18683116 (+)
LOC111192972 NA coding upstream 321083 18657276 ~ 18669434 (+)
LOC111192977 NA coding upstream 335828 18652128 ~ 18654689 (+)
LOC103027278 NA coding upstream 356274 18631412 ~ 18634243 (+)
LOC111192912 NA coding downstream 157734 19177002 ~ 19178587 (+)
LOC103043906 LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444 coding downstream 249154 19268422 ~ 19271847 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 267567 19286835 ~ 19305457 (+)
cd36 NA coding downstream 349246 19368514 ~ 19399220 (+)
LOC103040257 kdm7a coding downstream 550718 19569986 ~ 19598049 (+)
G65116 NA non-coding upstream 81831 18901452 ~ 18908686 (+)
G65044 NA non-coding upstream 149953 18792182 ~ 18840564 (+)
G65053 NA non-coding upstream 155663 18833959 ~ 18834854 (+)
G65019 NA non-coding upstream 231225 18711614 ~ 18759292 (+)
G65011 NA non-coding upstream 256367 18654778 ~ 18734150 (+)
G65144 NA non-coding downstream 143301 19162569 ~ 19162918 (+)
G65145 NA non-coding downstream 228263 19247531 ~ 19252415 (+)
LOC111192982 NA non-coding downstream 230958 19250226 ~ 19252449 (+)
G65150 NA non-coding downstream 234215 19253483 ~ 19257583 (+)
G65178 NA non-coding downstream 574643 19593911 ~ 19594223 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 367018 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 1270605 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 2102322 16833290 ~ 16888195 (+)
G64449 NA other upstream 2114576 16873087 ~ 16875941 (+)
G64431 NA other upstream 2236957 16753043 ~ 16753560 (+)
LOC103045528 NA other downstream 203941 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 257534 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 261024 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 761395 19780663 ~ 19794325 (+)
G65565 NA other downstream 1937867 20957135 ~ 20957635 (+)

Expression


Co-expression Network