LOC111192966


Basic Information

Item Value
gene id LOC111192966
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17807074 ~ 17817082 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671421.1
cttttgcaattaggtcaatgtaaaaGACACTGCGCTTAATAATAACAGgtattttagttagttttaagttattttatgtgcacatttatacatgtaatttcctggggacagaaatgttAAAACAATGTACTGTTAAAACAAGGTCATTCCTAACAGAGACAGATATGGGTTGCCATGTCTTACGCAAGATACGAGGAATGCAGTTCGAGAGGGGCAAAATGAATCACATGACTCCATTCCAGTCCATTACCTTTGTTATGACTTTATCTGGATTATGGTTTTCCGTGCTCTCTGGGTTGCTAATACGTATTTGCCTTGGCTGCTCCCTCTGTTCTGACTGCCAGCCGGGGAGGAGTATCGGCGCTCAGCTGACCCTTACACTAGGTGTGGCCTGCAGCAAGTCAAACAACTCAAACAACTCAACAACTGCATTGTGCAAACCGGTTTCCCTGAAAGAGAAGTAGGTCTGAGGGAAGGAGAAGAGTTGGAGCTTCCAAACTGCTGGAAACAACTAAAATTCAGCttaaaattcagaaaaaagCTTCAGAACTCCTTTAGACCCAACAGGGTTTATTAGAATGGAGAACACGGAAGAGGGCATCTCACCCAAAAAGATGCCAGAGGGCATCCAGCCTGGCATGGAGAACCACCAAGAAGAAACCAACCTGGCTCCAGAATCCAAAGATCCCAAAGAAGAGGCAACAAAAtcccaagaagaagaagaagaagatcagATAGATGCTTGTAATGGTACCACCAACGCTTCCACCAATGGTACCACCAATTCCCCCACCGATCCACCAACTGTGGAAGTGACCTGCGACTCCTGCATGGAGAACCCTCGCCCGGCCTCCAAGTCCTGCCTCACCTGCCAGGTGTCCTACTGTGAGGAGCACCTGAGGCCTCACCTGGAGAACAGCAAGTTCCAGACCCACAAGCTGGTGGAGCCACAGCTGGACATGGAGCTGCGCACCTGCCCGCATCACCACCTGGACCTGGAGCTGTACTGCACCACCGACAGCCGCTGCATCTGCGCCAGCTGTGGAAGCGAAGGGCACCACGGGCACAGCATCGTACCCATAGGAGAGGCCCGCAAGCAGATAGAGGGAGATCTCcagcagaaacagaaagagatggTGAAGAAGTTGTCTGCAGCGGAGCAGGCCATCACCAAACTGCAGGGAAACACAGAGTCCATAGAGAGCTCTGTGACGGGGGTACGAGCTGAGATCGAGCAGCAGTTCTCAGATCTGCAGGCGGCGGTGGAGGACGCTCAGAAGAGCACGCTGGATGTTCTGGAGGGGGAGTATAAACAGGCCCTGGGTCAGGCGGAGAGCATCCAGGCCCACATCGAGCAGAGGATCACTGAGCTGAAGAAGACCATGGCCCAGGTGGAGCGACTTCCTCGGAAAAAGAACGATGTGGATTTTCTGCAGGAATACACAGAGTGGAGGAAAGGTTTGGTGGACGTTTGTTTACCAGGGGTTTACATCAGCCTCATAGACCAGCTGGACACTTTCAGCCGAATCGTGAAAGAAACCACTAAAAACCTGTGTGAGCAGCTGACGTCCACCTACAGCGCTCAGCTTAAAGAGCTCTGTGAGAGCGAGAAACTGAGCATTAAGACGATGGTGCAGCCGAGCTCCCCGACCAAACGCCAGTCATCCGAACAGGAGCCCGTAACTAGAGAAGACTTCCTTAAATACGCCTCCAATCTGACCTTCAATCCTGACTCCACCCACAAATTTCTGAGGCTAACTGAGGACAACAGAAAAGCGAGTAACACCACGCCCTGGCAGCACAACTACCCGGATACACCGGACCGATTCGAGCACTGGCGGCAGGTGATGACCTGCGAGAGCCTTTACCTGGGCCGCCATTACTTTGAGGTGGAGCTAACAGGTGAGGGGGCGTACCTGGGCCTCACCTACAAGAGCATCGAACGCAAAGGCCAGGAGAGCAGCAGCTGCATCACCGGTAACGATTTCTCCTAGCTTCGGCGGGAAAGCCACGGCTACTCGGCCTGGCACTGCGACGCGGAGACGCCGGTGGAGGTGGGCGAGTTTTCTCGGATCGGACTCTACATGGACTACGAGAAGGGTCTGCTGGCCTTCTACGGTGTGGACGACACCATGAACCTGCTACACATGTTCACCACTAATTATCTAGAACCACTGTACCCTGTGTTCTGGCTCTCCAAGAAAGACAATAAAGTGGTTCTAGTCAAGCCGGGTGACTaaatttaatatcacaatagcataacaatagtttttttttatagcaatgTTATTGTTGTAGAGCCAAGCACAACAATAGTGATGAATGATAATAAACATATTCattattcagaggtgaaaatgtataaaaaattaataaatgtgtttaaaataatttgcgAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12006 TRIM16; tripartite motif-containing protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671421.1 True 2399 mRNA 0.50 7 17807074 17817082

Neighbor

gene id symbol gene type direction distance location
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding downstream 9265 17782752 ~ 17797809 (-)
stk19 stk19,LOC106601743,LOC106601674 coding downstream 75375 17721129 ~ 17731699 (-)
cep112 cep112 coding downstream 499998 17103295 ~ 17307076 (-)
LOC103042974 LOC108437161 coding downstream 710249 17045514 ~ 17096825 (-)
LOC103039070 NA coding downstream 861409 16895580 ~ 16945665 (-)
ush1g ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596 coding upstream 23097 17840179 ~ 17855162 (-)
hid1 hid1,LOC107710705,LOC107698779 coding upstream 67538 17884620 ~ 17920811 (-)
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding upstream 536251 18353333 ~ 18356495 (-)
LOC103034879 usp36,LOC107717487 coding upstream 672570 18489652 ~ 18536743 (-)
LOC103028836 NA coding upstream 721821 18538903 ~ 18550973 (-)
G64835 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 non-coding downstream 87163 17690229 ~ 17719911 (-)
G64841 rac1b,rac1,LOC103481976,LOC106531821,LOC102217008,LOC105935606 non-coding downstream 91632 17707996 ~ 17715442 (-)
G64692 NA non-coding downstream 128409 17677102 ~ 17678665 (-)
G64688 NA non-coding downstream 136657 17606894 ~ 17670417 (-)
G64694 NA non-coding downstream 164845 17640160 ~ 17642229 (-)
G64882 NA non-coding upstream 63368 17880450 ~ 17882420 (-)
G64898 NA non-coding upstream 160465 17977547 ~ 17978089 (-)
G64902 NA non-coding upstream 182474 17999556 ~ 17999808 (-)
G64904 NA non-coding upstream 206992 18024074 ~ 18024657 (-)
G64926 NA non-coding upstream 355450 18172532 ~ 18173990 (-)
LOC103043390 NA other downstream 117762 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 142513 17535296 ~ 17664561 (-)
G64492 NA other downstream 919171 16882335 ~ 16887903 (-)
G64387 NA other downstream 1221427 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 1939279 15671306 ~ 15867795 (-)
G64886 NA other upstream 111425 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 807793 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 821225 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 1081103 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 1463220 19280302 ~ 19284032 (-)

Expression


Co-expression Network