LOC107197388


Basic Information

Item Value
gene id LOC107197388
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18176227 ~ 18193170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671422.1
CCCACCTCCTTGACTTCTTCCTCATTGCTTTACACTGGAAACGAAACGAAACAGAAAGTGTTTTCTGATTGCTGGtctgtgtaggagtgtgtgtaaaATGGCTAAAGCCCCGACAAAAGATCAGGATTCCTTCAGCTGTCCGATCTGCCTGGACCTGCTAAAGGAGCCGGTGACCATTCCCTGTGGGCACAGCTACTGCATGAGCTGCATTCAGCACTGCTGGAAAGAGGACCAGCACCCGGACAGCGTCTACAGCTGCCCCCAGTGCAGACAGGCCTTCTCCCCAAGACCCGCCCTCAACAAGAGCACCATCATCGCCGAAATGATGGAGAAAATGAAGAACGCCGGACTCCTGACCGCGCCGGCGGCTCCGCGAGGCACAGGCGAGGTGTCGTGTGATGTCTGCGTTGGTACAAAGCTCCAGGCCGTGAAGTCCTGCCTGGTGTGCCTCGCCTCGTACTGCGAAACTCACCTCAGGCCTCACTATCAGTCACCTGCCTTTCAGAAGTACACGCTGGTCTCAGCCTCCacccagctccagcagcagatCTGCCCACATCACAGCAAACTGCTGGAGGCGTACTGCCGCACTGACCGCCGCTGCGTCTGCATGCTGTGCATCCTGGACGAACACAAGGGGCATGAAGTTGTTTCTGCTGCCAAAGAAATGGGCGAAAAACAGAAACAGCTGATTGATACTCAAAGCAAGTTCAAGCAGCAgattaaagaaagagagaaggagctTCAGGAGCTGAAAGAAGCTGTACAGTCTTTTAAGCTCAGTACACAGGCTGCAGTGCAGGACAGTGAGCGGATTTTCTCTGAGTTGATTCGATCCATTGAGAAGACTCGCTCTGAGGTGACGCAGCTGATTCGAGCCCGGGAGAAGGCAGTGGTGAGCCGGGCTGAAGAACTGCTGGTGTGGTTGGAGCAGGAGATCACTGAGCTGAGGGGGAAAGACAATGAGCTGGAGGAGCTTTTACACACAGAGAATCATATCTATACACTACAGAGAATACCAGCTCTCTGTGCTCCGCCTGGCTCTGCAGAACTTCCCAGCATCACCATCAACCAGCTTTATACCTTTACTGACGTGCTGAAGTGTGTGTCTGAGCTGAGAGAGAGGCTGGAGGATCTGTGTAAGCAAGACGTCGTCAAGATATCCAGAGAAGTTAATGCTGTCGCTATTACAGAACCTCTTACCAGAGAAGACCTGCTACAATACTCTTGCCAGCTCACCCTGGACCCCAGTACAGCGCACCGGCAGCTCTGCCTGACTGAGGGGAACACTAGGGGGCGCTATACGAGTGTCCGTCAGGCCTACCCTGACGATCCCGGGCGGTTCGATAAGAACGCTCAGGTGCTGTGCTGTGAGGGTTTGATGGGGCGGAGCTACTGGGAGGTGGAGCTGGACAGGAAAGATGGACTCACCGTAGCGGTGTCGTATAAAAGCATCAGCAGGAAGGGGTGGGGCTACGATGTGACGTTCGGATGCGATCAGCAGTCCTGGAGACTCGACTGCTCGGCCGGAGGTTTTTTTTCTggcacaataataaaaaaattaatattccTGCAGCTGGAGGCGGATCTAAAGTCGGAGTGTACCTGGATCACAGAGCCGGAGCTCTTAGCTTCTACAGCATCACCGAACCAATCGTCCTCCTCCATAAAGTTACAGCCGTGTTCAATCAGCCGCTCTATCCGGGGTTTGGATTCGGTTATTATGAATCAGCTGTTAAAATTTGTGACTTAAAATAAGATCAGGGTCATCGATAACCCATAAACTCCCCTAAAAGTTCAAGcaaaatgttgtgttttgttgtttttaaatagaaactaaaaaaagtatCATTACATTGTCATTCTTTATTGAGCATGAGAACAGTATACATCTCTGTATACTCTAATACTCTGAAAATCATTTTCTAACTTAAAATGCTATGTTATCTGTTAGTTTATCATTTAAATTTGGCCCTAGATTACGTTTTCTGTTgtaaaatactctaaattagTTGGATTCAATGTAGCATCcgaatatttaatacaaattagtaaagcacattaaaaacacatcacTTTCTACACACTGATGTTGTGTAGGAAAAAGTTGTCAATATGcgcttttaatattttttgtgcaACTCTGTCGTTACCACCTCTGTCCTCACATAATTATGGACATCtgcttttaaattatttcacatggaaaaaataagagcgcttaaaaatgataaattcctttgattttaccaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671422.1 True 2255 mRNA 0.48 6 18176227 18193170

Neighbor

gene id symbol gene type direction distance location
LOC103030006 LOC108437142,LOC105936201,LOC103140951,LOC107083146,LOC103468841,LOC102223636,LOC105899306,LOC105012845 coding upstream 3990 18161072 ~ 18172237 (+)
LOC103040205 NA coding upstream 44217 17984965 ~ 18132010 (+)
LOC111192979 NA coding upstream 246378 17924346 ~ 17929849 (+)
otop2 otop2 coding upstream 296955 17860217 ~ 17879272 (+)
amn NA coding upstream 370401 17804284 ~ 17805826 (+)
LOC111192978 NA coding downstream 3585 18196755 ~ 18213076 (+)
LOC111192973 NA coding downstream 22522 18215692 ~ 18251351 (+)
LOC103027278 NA coding downstream 438242 18631412 ~ 18634243 (+)
LOC111192977 NA coding downstream 458958 18652128 ~ 18654689 (+)
LOC111192972 NA coding downstream 464106 18657276 ~ 18669434 (+)
G64776 NA non-coding upstream 52328 18114974 ~ 18123899 (+)
G64754 NA non-coding upstream 114897 17972579 ~ 18061330 (+)
G64770 NA non-coding upstream 124984 18050049 ~ 18051243 (+)
G64766 NA non-coding upstream 147472 18028086 ~ 18028755 (+)
G64753 NA non-coding upstream 167556 17957613 ~ 18008671 (+)
G64787 NA non-coding downstream 5826 18198996 ~ 18230483 (+)
G64792 NA non-coding downstream 73069 18266239 ~ 18329102 (+)
G64794 NA non-coding downstream 113735 18306905 ~ 18384819 (+)
G64797 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 non-coding downstream 141346 18334516 ~ 18355513 (+)
G64799 NA non-coding downstream 151782 18344952 ~ 18345563 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 456315 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1288032 16833290 ~ 16888195 (+)
G64449 NA other upstream 1300286 16873087 ~ 16875941 (+)
G64431 NA other upstream 1422667 16753043 ~ 16753560 (+)
G64289 NA other upstream 1733778 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 362958 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1030039 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1083632 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1087122 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1587493 19780663 ~ 19794325 (+)

Expression


Co-expression Network