ush1g (ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596)


Basic Information

Item Value
gene id ush1g
gene name ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17840179 ~ 17855162 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671424.1
TGGAGAATGTCGCGCGCGGCGCTCGAGCGCAGGGCCGCCGGTTTCCGGCCCGCCGCCGCGGACGGAGAGTGACGGACCCCGCAGGATGGAGGCTGAGGTCCGGGAGCACCATGAATGATAAGTACCACAGGGCGGCTCGGGACGGGTACCTGGACCTGCTGAAGGAGGCCACGCGGAAGGACCTGAACGCACCTGATGAAGATGGCATGACCCCCACCCTGTGGGCGGCGTACCACGGGAACCTGGACGCGCTCAGACTCATAGTGGCGAGAGGAGGGAACCCTGATAAGTGTGACATATGGGGGAACACACCGCTTCACCTTTCTGCTGCCAATGGCCATCTCAACTGCCTGTCCTTCCTGGTGTCGTTCGGCGCCAACACCTGGTGCCTGGACAACGACTACCACACGCCGCTGGACATGGCCGCCACCAAGAACCACATGGACTGCGTACGGTACCTGGACTCCATCGCCGCCAAGCAGACGGCCCTCAACCCCAAGCTGGTGGCCAAACTGAAGGACCGGGCCTTCCGGGACGCCGAGCGGCGCATCAAAGACTGCGTGAAAATGCAGCGCAAGCATCACCGCCGCATGGAGCGCAAGTTCCAGAAGGAGGCCACCGAGGCGTCCGTGTCTGATGCCATGAGCTTCTccagctacagcagcagcacccTGAGCCGCAAGCTGCACCACTTCAACACTGCCACCAGCGTGCCATACTCACAGGCTACTCTCCACGCCACGACCAGAGGCAAAACGAAGATTCAGAAGAGGCTGGAGAAGAAGAAGCAGGGCGACGGGACCTTCAAGATCTACGAGGACGGCAGGAAGAGCGTTCGCTCGCTTTCCGGCCTGCAGCTTGGGAACGACGTGATGTTCCTGAAGCAGGGAACCTACGTCAACCCCAAGGAGCGCGGCCGGCGCAACATCCGGGACATGTTCCCGCGGGACGAGGATGCCGTCTCGCGTGCCATCAGCGAGCCGGACCTGCACGGCGTGGATGTGGATTATTCTGAGATCAGCACGGACTCGGGTCACGACTCGCTCTTTAACCGGCCGGGTCTGGGCACCATGGTCTTCCGACGCAACTACGTGAGCGGCGGCCTGTTCGGTATCGGCGCCCGGGACGAGGGAAGCATTGTCAGTAGCGGACGAGCCCCCAACGTTCGCCTGCGCAGTCGCCTGCAGCGCTCCCCCAGTCTGGACGAGGACAGTATCGGCAGTGCACGGAGTCTCCAGGACCGGAACGTGGAGGAGCTTCCCTGGGACGAGGTGGAGCTGGGTCTGGACGATGACGACGAGCCGGAGAGTAACCCGCTGGAAGTGTTCCTGGCCACTCAGAGCATGCACGAGTTCATCCCCATCTTTAAGAGGGAGAAGATTGACCTGGAAGCGCTGCTGCTGTGCTCGGACGACGACCTCAAGAGCATCCACATCCCCCTCGGACCCCGCAAGAAGATCCTCGATGCCTGCCAGCGACGCCTGGAGACCATCGATGATCCGGAATACATAGAGGATACAGCGCTataGCAGAAGTGGATTTTTGCTGCTGAACTTTATTTTTGGACGTCTCAGTTCCTGCTAAATGACAGAAACTGGAAGGATTGACTGAATGGCAACGACAGAAAGTGTTAGGAGTGATATACGGTGGAGTACGTACGCCCACACGAACACGAACAGGAATCAAGCTGAAGCTTCACAGTTGCCATACGTACATTAGCTATGGGCAGATCCTGCTGAGAGCCCTGACCCGGTTCCTCTCAGCCCGACATGTCGCCCCCGTGGGGCATGATCTTTAAGTGCCTGTGCCTCCAGTGCCCGCACACGACTACTGATAATGTCATTTCAGACATTACCTATTTATTTATCATAGAAATCAGATATTTTTGAATTATAATGTACAATTTTAGCAGCACACACTTTAGACATACACTATATgaacaaatgtttgtggacacctcttctaATAAATGGACTCTAATCACTGCACTCACTCACACTGTCCACTGAGGGTGGTAATATATTAGCTTTTGTTACGTATTGGCccaactagggctgcacaatattgaatattgaaaagaaaatgacatagcgatgttttgttgttttgcgatataaaaaaataaatgaattttcaTTGAGTTTCACTAGAAATCAAAGATACAACATGTTATGAGGTTAATAATGGGATCTGTGTATCAATGATTTAACTAAACAATACTGGGTAGATATAATTGATAATATGACAGATTGCCATTCtaaatgagaaaaatatatatttttcttagtatcaagcagcaaaaaagttttttctaaa
>XM_022671425.1
TGGAGAATGTCGCGCGCGGCGCTCGAGCGCAGGGCCGCCGGTTTCCGGCCCGCCGCCGCGGACGGAGAGTGACGGACCCCGCAGGATGGAGGCTGAGGTCCGGGAGCACCATGAATGATAAGTACCACAGGGCGGCTCGGGACGGGTACCTGGACCTGCTGAAGGAGGCCACGCGGAAGGACCTGAACGCACCTGATGAAGATGGCATGACCCCCACCCTGTGGGCGGCGTACCACGGGAACCTGGACGCGCTCAGACTCATAGTGGCGAGAGGAGGGAACCCTGATAAGTGTGACATATGGGGGAACACACCGCTTCACCTTTCTGCTGCCAATGGCCATCTCAACTGCCTGTCCTTCCTGGTGTCGTTCGGCGCCAACACCTGGTGCCTGGACAACGACTACCACACGCCGCTGGACATGGCCGCCACCAAGAACCACATGGACTGCGTACGGTACCTGGACTCCATCGCCGCCAAGCAGACGGCCCTCAACCCCAAGCTGGTGGCCAAACTGAAGGACCGGGCCTTCCGGGACGCCGAGCGGCGCATCAAAGACTGCGTGAAAATGCAGCGCAAGCATCACCGCCGCATGGAGCGCAAGTTCCAGAAGGAGGCCACCGAGGCGTCCGTGTCTGATGCCATGAGCTTCTccagctacagcagcagcacccTGAGCCGCAAGCTGCACCACTTCAACACTGCCACCAGCGTGCCATACTCACAGGCTACTCTCCACGCCACGACCAGAGGCAAAACGAAGATTCAGAAGAGGCTGGAGAAGAAGAAGCAGGGCGACGGGACCTTCAAGATCTACGAGGACGGCAGGAAGAGCGTTCGCTCGCTTTCCGGCCTGCAGCTTGGGAACGACGTGATGTTCCTGAAGCAGGGAACCTACGTCAACCCCAAGGAGCGCGGCCGGCGCAACATCCGGGACATGTTCCCGCGGGACGAGGATGCCGTCTCGCGTGCCATCAGCGAGCCGGACCTGCACGGCGTGGATGTGGATTATTCTGAGATCAGCACGGACTCGGGTCACGACTCGCTCTTTAACCGGCCGGGTCTGGGCACCATGGTCTTCCGACGCAACTACGTGAGCGGCGGCCTGTTCGGTATCGGCGCCCGGGACGAGGGAAGCATTGTCAGTAGCGGACGAGCCCCCAACGTTCGCCTGCGCAGTCGCCTGCAGCGCTCCCCCAGTCTGGACGAGGACAGTATCGGCAGTGCACGGAGTCTCCAGGACCGGAACGTGGAGGAGCTTCCCTGGGACGAGGTGGAGCTGGGTCTGGACGATGACGACGAGCCGGAGAGTAACCCGCTGGAAGTGTTCCTGGCCACTCAGAGCATGCACGAGTTCATCCCCATCTTTAAGAGGGAGAAGATTGACCTGGAAGCGCTGCTGCTGTGCTCGGACGACGACCTCAAGAGCATCCACATCCCCCTCGGACCCCGCAAGAAGATCCTCGATGCCTGCCAGCGACGCCTGGAGACCATCGATGATCCGGAATACATAGAGGATACAGCGCTGTAA

Function

symbol description
ush1ga Acts upstream of or within auditory receptor cell morphogenesis. Is expressed in hair cell anterior macula. Human ortholog(s) of this gene implicated in Usher syndrome type 1G. Orthologous to human USH1G (USH1 protein network component sans).
ush1g Enables identical protein binding activity and spectrin binding activity. Involved in several processes, including equilibrioception; photoreceptor cell maintenance; and sensory perception of sound. Predicted to be located in actin cytoskeleton and cytoplasm. Implicated in Usher syndrome type 1G.

NR:

description
PREDICTED: Usher syndrome type-1G protein isoform X1

GO: NA

KEGG:

id description
K21878 USH1G; Usher syndrome type-1G protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671424.1 True 2316 mRNA 0.54 4 17840179 17855162
XM_022671425.1 False 1529 mRNA 0.62 3 17841976 17855162

Neighbor

gene id symbol gene type direction distance location
LOC111192966 NA coding downstream 23097 17807074 ~ 17817082 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding downstream 42370 17782752 ~ 17797809 (-)
stk19 stk19,LOC106601743,LOC106601674 coding downstream 108480 17721129 ~ 17731699 (-)
cep112 cep112 coding downstream 533103 17103295 ~ 17307076 (-)
LOC103042974 LOC108437161 coding downstream 743354 17045514 ~ 17096825 (-)
hid1 hid1,LOC107710705,LOC107698779 coding upstream 29458 17884620 ~ 17920811 (-)
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding upstream 498171 18353333 ~ 18356495 (-)
LOC103034879 usp36,LOC107717487 coding upstream 634490 18489652 ~ 18536743 (-)
LOC103028836 NA coding upstream 683741 18538903 ~ 18550973 (-)
LOC103028209 NA coding upstream 712515 18567677 ~ 18575169 (-)
G64857 NA non-coding downstream 24451 17769247 ~ 17815728 (-)
G64835 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 non-coding downstream 120268 17690229 ~ 17719911 (-)
G64841 rac1b,rac1,LOC103481976,LOC106531821,LOC102217008,LOC105935606 non-coding downstream 124737 17707996 ~ 17715442 (-)
G64692 NA non-coding downstream 161514 17677102 ~ 17678665 (-)
G64688 NA non-coding downstream 169762 17606894 ~ 17670417 (-)
G64882 NA non-coding upstream 25288 17880450 ~ 17882420 (-)
G64898 NA non-coding upstream 122385 17977547 ~ 17978089 (-)
G64902 NA non-coding upstream 144394 17999556 ~ 17999808 (-)
G64904 NA non-coding upstream 168912 18024074 ~ 18024657 (-)
G64926 NA non-coding upstream 317370 18172532 ~ 18173990 (-)
LOC103043390 NA other downstream 150867 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 175618 17535296 ~ 17664561 (-)
G64492 NA other downstream 952276 16882335 ~ 16887903 (-)
G64387 NA other downstream 1254532 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 1972384 15671306 ~ 15867795 (-)
G64886 NA other upstream 73345 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 769713 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 783145 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 1043023 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 1425140 19280302 ~ 19284032 (-)

Expression


Co-expression Network