LOC103035518 (nptx1l,LOC108435874)


Basic Information

Item Value
gene id LOC103035518
gene name nptx1l,LOC108435874
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19111133 ~ 19121460 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671426.1
GATTCCGGTGCACGGACAGCTCCTGGTGCTGAACTCGCCGTCTGTCCCGCGCCAGCATGGAGGCTCGAGCTCCCGGAGCGCGCTGGAGGCTGCTCgcgctgtgctgctgctgcgggtTCCTGCTGCCCGCGAGCCGCGCGCAGGACCTCGGCCAGACCCAGTTCATCTGTACCTCCGTCCCCAAAGACCTGGACCTGTGCGCGGCCACGCTGCAGAACAGCGTTCCGGGGGAGGACCTGAAGAGCACCGTCCTGCAGCTGCGCGAGACCGTCCTGCAGCAGAAGGAGACCATCATCAACCAGAAGGAGACCATCCGTGAGCTCACCTCCAAACTCGCGCGCTGCGAGAGCCAGAGCGCGCCGGAGGCGGGGGAGCTgcgggggggcggggggggaggaggagggaggaggaAGGAGTCCGGATCTAAGAACACTATGGGGGATGTATCTCGGGGTCCGCCCGACACCCTGACCCAGCTCTCCCAGACCCTCCAGTCCCTCAAACAGAGGCTGGAGAACCTGGAGCAATTCAGCCGCAACAACAGCTCAGTGCAGGCGAACAGTCTGAAAGATCTTCTCCAGAGTAAGATCGATGATCTGGAGAAGCAGGTCTTGTCCCGCGTCAACAGCCTGGAGGAGGGCGCCAAGCCCGGCCAGCGCAACGACACGGAGCAGCGCGCGCGCGTCGAGTCCACTCTCACCTCCCTGCACCAGCGCATCACCGACCTGGAGAAGGGTCAGAAGGAAAACAGGCCTCTGGATAAGTTCCAGCTGACGTTTCCTCTGAGAACCAACTACATGTACGCCAAGGTGAAGAAGAGTCTGCCGGAGATGTACGCTTTCACCGTCTGCATGTGGATTAAATCCAACGCTTCTCCAGGAGTGGGAACGCCGTTCTCCTACGCCGTCCCCGGTCAGGCCAATGAGCTGGTTCTGATTGAGTGGGGGAACAACCCAATGGAAATTCTCATCAATGACaagGTCGCGAAGCTGCCGTTTTTGATCAATGATGGGAAATGGCATCATATCTGTGTTACCTGGACGACGCGTGACGGCGTGTGGGAGGCGTTTCAGGATGGAGTGATGAGGGGCAGCGGAGAGAACCTGGCTCCGTATCATCCAATCAAACCTCAGGGAGTGCTGGTGTTAGGACAGGAACAGGACACTCTGGGCGGAGGGTTCGATGCCACCCAGGCGTTtgtgggcgatatggcaaaTTTCCACATCTGGGACCGGAAGCTGACAGTGGGCGAGATTTATAATCTGGCAACCTGCAGCAGTAAAGCACAAGTGGGTAACGTCTTCTCCTGGATGGAGACCAGCCTCGACATCTACGGAGGAGCATCCAAATGGACATTTGAGGCTTGTCGCCAGCTGAACTGATCTATATGGGAATTACAAAGAAAGTAACAAGAATTAGGAGTTTCTGAGTTCAACCATCGTCATCCAGTCTGGTCGTTCATCTTCAAGTGTCATTCAGAAGATTCAGAGACAAACACGGacacaatcaaccaatcaaccaatcaaacaaccaacaaaccaaccaaccaaccaattaaccaaacatccaaccaaccaaattTTTGTTTGTAGATTGAATGAGTTCCTTTGGACTCTTGAGCGTATTTTTCTTGGATTTTGGATTTTAGATTTTGAAGAAGAGTCTATAAAGGTTTTTACGGTGAGTTTTGGTTTTGAAGGCACTGTGTTTTTACTCTTGGTGTTTTTTGATCTTCTGCTGGGCGAGTGATGCCTTACCGGACGGTTGGTCTACTTTCCACGACACAGCGAAGACTTCAGTTCTGATAGTGTGGATCACATGACCTGTTTTTAGCATTGGGAGTCGTGTAGTTTTACGTTAGATTTGTTTAGTCACATAGGAACCGGTTAAGAATCCTCCCTCACCCCTGGATACTCACTGTGAACAATGCTACTCAACGATACTCAACGAAACGGAAGCGGAGGAAGAATGTACCGAACCAAAACACGGACCAAAACGATACGGCGTCTTATTCTTTCTTACGAATCTTACGATTGTTTCTTTCTTCTCACCACCTGCTTGAAGTTGttttggatgtgtgtgtgtatttgagtgtgtgttggtgtgtgtgtttgtgagtgtgtgtatgtaaatgaatgtgaatatgAATGAGTGTGTATTTACTAATTGCCAACATGTTAAAAGCCTGGGTGCCTTTGGGCTGTTGAAGTATCTCAGACTGGAATCATTCTTCATCACTTGCGATGTTCTCGTTCGTTCTcgtgtgtttatttctttgtgtaACTACTGATTTCTGAAGCTACGTTGATTCCGATCACGACACGTATTGATTGAGTTGGGCGACGGAAGCGGTGAGTGATTTTTGGAGGCGGTTTGTTTGAAGCACAGTTTGTTCGGCTGGTGTTTGTATTTTCTAAGGAATGTTCTCTGTACAGAAAACAGCATGATAGTCCAAAATGCtgcaaaaagcataaaaaaaacagaatccgCTTTTCCTATGCTCCTTTTGGGTTGAgattttatactgtattgttATATGCTAAAAGCATGGCAGCactgaaagataaaaaaaatctaatttttgtaataaaattgtGATACCTGAAACAGCA

Function

symbol description
nptx1l Is expressed in adaxial cell; nervous system; neural tube; pharyngeal arch; and trigeminal placode. Orthologous to human NPTX1 (neuronal pentraxin 1).

NR:

description
PREDICTED: neuronal pentraxin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671426.1 True 2612 mRNA 0.50 5 19111133 19121460

Neighbor

gene id symbol gene type direction distance location
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding downstream 392503 18717502 ~ 18718630 (-)
tspan10 NA coding downstream 521063 18586569 ~ 18590070 (-)
LOC103028209 NA coding downstream 535964 18567677 ~ 18575169 (-)
LOC103028836 NA coding downstream 560160 18538903 ~ 18550973 (-)
LOC103034879 usp36,LOC107717487 coding downstream 574390 18489652 ~ 18536743 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding upstream 287838 19409298 ~ 19515383 (-)
lhfpl3 lhfpl3 coding upstream 544099 19665559 ~ 19714443 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding upstream 611295 19732755 ~ 19738419 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 932491 20053951 ~ 20064790 (-)
myf5 myf5,LOC107734855 coding upstream 1061634 20183094 ~ 20189701 (-)
G65185 NA non-coding downstream 202439 18901627 ~ 18908694 (-)
G65108 NA non-coding downstream 274701 18781871 ~ 18836432 (-)
G65111 NA non-coding downstream 275697 18833847 ~ 18835436 (-)
G65103 NA non-coding downstream 294617 18760371 ~ 18816516 (-)
G65102 NA non-coding downstream 350836 18759800 ~ 18760297 (-)
G65222 NA non-coding upstream 18137 19139597 ~ 19248687 (-)
G65236 NA non-coding upstream 127726 19249186 ~ 19250162 (-)
G65232 NA non-coding upstream 181434 19302894 ~ 19305411 (-)
G65251 NA non-coding upstream 257254 19378714 ~ 19384419 (-)
G65256 NA non-coding upstream 280884 19402344 ~ 19426200 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 87475 18898185 ~ 19023658 (-)
LOC111192976 NA other downstream 398613 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other downstream 460790 18638307 ~ 18650343 (-)
G64886 NA other downstream 1179963 17928507 ~ 17931170 (-)
LOC103043390 NA other downstream 1421821 17678814 ~ 17689312 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 158842 19280302 ~ 19284032 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other upstream 184527 19305987 ~ 19370708 (-)
ndufb2 ndufb2 other upstream 478754 19600214 ~ 19605725 (-)
llph llph other upstream 673694 19795154 ~ 19799602 (-)
ost4 NA other upstream 2423958 21545418 ~ 21574199 (-)

Expression


Co-expression Network