LOC111192968


Basic Information

Item Value
gene id LOC111192968
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17768928 ~ 17780592 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671427.1
AACATCAGCCTTTAGCTGTGAGTCTCTGTTACTTTATTAATCAGACTCTCAGTAAGCAGACGGGGAGACGTGCTGTTTAAATGCAGAGAGTCCAGCTTTACTAACATCATCCATGTGATTCTGGTTTCAGAAAAGTTTAGACTATGGCATCTACTAAGCAGATTTTGAAGATTTTGCTCGTCCTTTCCTACCTTTTAgtgttggTGGGATCCCAAAGCTCAGCTTGTGTTTCACGTCGATGTCTGGCTAATGAATTCATTAAAAAGGATCTGTACAGTCCTCCACAGCCTCCAGGGTGCGCTATCACTGTGAACCTCACCTCCATCCAGTACCAGACCCTCTCTGTGgaTACTAAAACTTTGCGTTTCTCAAGTCGCTTAAAAATCACTATGCAATGGAAAGATCCAGACCTGGCATGGACAGAGTCACAGTACAGGTTTAAAGATCTCATAATGCCGTCCAGTAAAATGTGGACGCCTCATCTGACTGTGGACAATGCagtTTACACAGATGTAAAGCCAGTTTCTAAGGATATACTGGTGAAAAACGATGGCACTGTGTCGTATTCTGTTATTATGTATATCACAGTGATGTGTGGGATCAACCTCTTCACCTACCCGTTTGTTTCTGAATCATGCCCTGTGGCCCTCAACGGATGGAATCAATCCTCTTGTGGTCTGACTCTGCTGTACGGGCGGATACTTATAGTGGGAGGAGATCGAGGAGAATGGAAAACGTTATCGGTGAATCTTCACGGGAATGGCCGGAACtacttaaatGTGTTTCTGTCTTTAAACCCGTTTAACGCCGTGGTGGCGCTGGTTCTGCCCGCGGCGCTGATCATGATCGTGGACCTGGTGAGCTTCGCTCTGCCGCTGGATGGAGGAGAACGAAACTCCTTTAAGATAAAGCTGGTGTTCAGCTTCACCATGTTCCTCATGATGCTCTGCAAACAGGTGCCCGTCTCCGGACGCTGCAGCCCTCTCATCTATTTTCACTACTGCTTCTGCCTGATTGTGCTGGTGGTGAGTGTGCTGATATCTATGATACTGACCCGGCTGTGTAAAACCGGCACCGCCTATCCCAGCTGTCCGAACCTATCCAAGATCCGAAGACTGCGTGAATTATTCAGCTTTAAAGCTCGACGGAATGAGAAGAGTCCTGAGAAAATGGCAGGTATTGATCTCACTGATGGattaaaaacatctgaaaaGCTGGCAGCAAAGCCGGCCGCCATCCAGAGCGCCTGCAGGTTTGTGGAGAACATGGATAAAGACGTGCGGGAGAAAGAGACGAGGCTACGCTACGCTAAATCCTGGGACAGAATCTGTTTCTTTACTTATCTGAGCCTGGACATTATTTACGGTATTGTTATAACCGTTTTCAGCACAATAGACTGTTGTACAATTAAtaacatacagttttaagatgataataataagaaggtgcttcattttattttatcgtTTTGCTTCATCATTTTTTGCATTTGCCAAACAAGAGCTGTTCATAATCTGAAATCATGCTGCAGGTTAAGCGTgaaattttacatatttacgTATCAAAGGCCAATGTAAAGTACACACAAGCAACTGAAATGTTAAATGTCTattgtctgtatttttttattatattttattgttaaactagtttttaaatgttttttttttttggcttttactgtgtttttccacATCTATTAATTTTTCTTATGTATTTTCCCCTTTATCCCTGTttatgtaaagcattttaaatttgccactgtgtcagaaaggtgctatacaaataaacacgCCTTGCCTTAAAA

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671427.1 True 1807 mRNA 0.42 10 17768928 17780592

Neighbor

gene id symbol gene type direction distance location
LOC111192970 LOC108437139 coding upstream 4807 17748628 ~ 17764121 (+)
LOC107197389 NA coding upstream 23155 17732094 ~ 17745773 (+)
LOC111192980 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding upstream 49070 17707970 ~ 17719858 (+)
LOC111192975 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding upstream 66013 17690206 ~ 17702915 (+)
LOC111192910 cacng5b,LOC108437158,LOC107556612,LOC107698772,LOC107729207,LOC107664435 coding upstream 186800 17568799 ~ 17582128 (+)
amn NA coding downstream 23692 17804284 ~ 17805826 (+)
otop2 otop2 coding downstream 79625 17860217 ~ 17879272 (+)
LOC111192979 NA coding downstream 143754 17924346 ~ 17929849 (+)
LOC103040205 NA coding downstream 204373 17984965 ~ 18132010 (+)
LOC103030006 LOC108437142,LOC105936201,LOC103140951,LOC107083146,LOC103468841,LOC102223636,LOC105899306,LOC105012845 coding downstream 380480 18161072 ~ 18172237 (+)
G64595 NA non-coding upstream 90486 17677928 ~ 17678442 (+)
G64586 NA non-coding upstream 94767 17622861 ~ 17674161 (+)
G64579 NA non-coding upstream 146256 17565712 ~ 17622672 (+)
G64583 NA non-coding upstream 172799 17588922 ~ 17596129 (+)
G64580 NA non-coding upstream 203471 17562563 ~ 17565457 (+)
G64709 NA non-coding downstream 90 17780682 ~ 17815649 (+)
G64753 NA non-coding downstream 177021 17957613 ~ 18008671 (+)
G64754 NA non-coding downstream 191987 17972579 ~ 18061330 (+)
G64760 NA non-coding downstream 218783 17999375 ~ 18000064 (+)
G64763 NA non-coding downstream 226562 18007154 ~ 18008138 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 49016 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 880733 16833290 ~ 16888195 (+)
G64449 NA other upstream 892987 16873087 ~ 16875941 (+)
G64431 NA other upstream 1015368 16753043 ~ 16753560 (+)
G64289 NA other upstream 1326479 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 775536 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1442617 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1496210 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1499700 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 2000071 19780663 ~ 19794325 (+)

Expression


Co-expression Network