LOC107197389


Basic Information

Item Value
gene id LOC107197389
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17732094 ~ 17745773 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671428.1
taatttattttattttaaaaagctgcctattttagtgtgtttttttatttctacagaAGATCAGGATGATGTCCACGCAAAGGATTAtcaaatatttcaatattttatattcctTAATTGTGTTGATTGGATCGTCTGCAGCTTGTGAATCTCGGCGTTGTCTGGCTGAAGAGTTTATTAAGAGGAAACTGTACAGTTCTCCTCAGCCTCCGGAGTGTGTGGTTAACGTGAATCTCACATCCATCCAGTATCAGACTCTCTCTGTCGACACTAAAGTTATGCAGTTATCGAGCCGGATTAAGATTGACATGGAGTGGAACGACCCAGATCTTGCCTGGTCAGACTCACAGTACACGTTTGATGAAATCATGCTGCCATTTAATAAGATCTGGACTCCTGACCTCAGCGTGGACAATGCGGTATACCTGGACGTGAAGCCCGTCTCTAATGATATACTGGTGAAGCAGGACGGCACTGTGAACTACGCCATCCTCATGTACTCCACGGTCGTGTGTGGGATCAATCTCTTCACCTATCCTTTTGTTCAGGGTGAATGTCCTGTAGCCATCAATGGATGGAATCAAAGCTCCTGTGGCCTGCAGCTGGAGTACGGCTCGCTGTATTTTGTGGGAGGAGATCGAGGGGAGTGGCAGACCGTGTCTGTAGAACTTTATAAGAACCAAGCTGATGATAATCACAACTATCTTCAGGTCAGCATGTCCATTAACCCGTTTAACGCCCTGGTGTCCCTGGTCCTGCCCAGTGCGCTGATCATGCTGGCTGATCTGGTGAGTTTCGCTCTGCCGCTGGAAGGAGGAAGGCGCAGCTCCTTTAAAATCACGCTGGTGCTGAGCTTCACCATGttcctcctcatcctcaccaACCACCTGCCCAGCGGCGAACACTGCAACCCTCTGATACgttatcacttctgtttctgtctgttcGTGCTGGTGCTCAGTATGCTGATGTCGATGGTGTTCACAAAGCTGGCAGCAGATGGCACCATCAACCCATTCAAACTCCAAAAGATGCCCAGATCAGATCTCAGTGTGAACTGTGCCGTAACGAAATCATCCGCCCTGAACAAAGAGGAGGATTCTCTGGAGAAGATCGGGAGTTTTTTGGAGAACATGGATAAAGAGGAGAAGATGATGAAGGAGAGGCAGATCTACACAAACAATCTGGATAAAATCTGCCTGTGGATTTATTTAATCCTCGATATCGTCTACAGTTTATGTATTCTCATTTTAACTAGAACAGCGATGTGTAACTTTAATAATCTTGATTTCTGGAACTAATTCACTGCAGTTCTTCTTCTATGGGCTGTTTACTATCAAACACATGTACAAACACATAGCACATCTAAATCTCTCTAAATATACCATGGTTttatgatatactgtatattgtatgtttttacaGACATTGTCTACAAAACTGTATTTGACAGTGATATTTCAGCAGATACTGTTGCTAatttttatcataattttattaaaaatactttttatttcacA
>XM_022671429.1
taatttattttattttaaaaagctgcctattttagtgtgtttttttatttctacagaAGATCAGGATGATGTCCACGCAAAGGATTAtcaaatatttcaatattttatattcctTAATTGTGTTGATTGGATCGTCTGCAGCTTGTGAATCTCGGCGTTGTCTGGCTGAAGAGTTTATTAAGAGGAAACTGTACAGTTCTCCTCAGCCTCCGGAGTGTGTGGTTAACGTGAATCTCACATCCATCCAGTATCAGACTCTCTCTGTCGAGTGGAACGACCCAGATCTTGCCTGGTCAGACTCACAGTACACGTTTGATGAAATCATGCTGCCATTTAATAAGATCTGGACTCCTGACCTCAGCGTGGACAATGCGGTATACCTGGACGTGAAGCCCGTCTCTAATGATATACTGGTGAAGCAGGACGGCACTGTGAACTACGCCATCCTCATGTACTCCACGGTCGTGTGTGGGATCAATCTCTTCACCTATCCTTTTGTTCAGGGTGAATGTCCTGTAGCCATCAATGGATGGAATCAAAGCTCCTGTGGCCTGCAGCTGGAGTACGGCTCGCTGTATTTTGTGGGAGGAGATCGAGGGGAGTGGCAGACCGTGTCTGTAGAACTTTATAAGAACCAAGCTGATGATAATCACAACTATCTTCAGGTCAGCATGTCCATTAACCCGTTTAACGCCCTGGTGTCCCTGGTCCTGCCCAGTGCGCTGATCATGCTGGCTGATCTGGTGAGTTTCGCTCTGCCGCTGGAAGGAGGAAGGCGCAGCTCCTTTAAAATCACGCTGGTGCTGAGCTTCACCATGttcctcctcatcctcaccaACCACCTGCCCAGCGGCGAACACTGCAACCCTCTGATACgttatcacttctgtttctgtctgttcGTGCTGGTGCTCAGTATGCTGATGTCGATGGTGTTCACAAAGCTGGCAGCAGATGGCACCATCAACCCATTCAAACTCCAAAAGATGCCCAGATCAGATCTCAGTGTGAACTGTGCCGTAACGAAATCATCCGCCCTGAACAAAGAGGAGGATTCTCTGGAGAAGATCGGGAGTTTTTTGGAGAACATGGATAAAGAGGAGAAGATGATGAAGGAGAGGCAGATCTACACAAACAATCTGGATAAAATCTGCCTGTGGATTTATTTAATCCTCGATATCGTCTACAGTTTATGTATTCTCATTTTAACTAGAACAGCGATGTGTAACTTTAATAATCTTGATTTCTGGAACTAATTCACTGCAGTTCTTCTTCTATGGGCTGTTTACTATCAAACACATGTACAAACACATAGCACATCTAAATCTCTCTAAATATACCATGGTTttatgatatactgtatattgtatgtttttacaGACATTGTCTACAAAACTGTATTTGACAGTGATATTTCAGCAGATACTGTTGCTAatttttatcataattttattaaaaatactttttatttcacA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671428.1 True 1520 mRNA 0.43 9 17732094 17745773
XM_022671429.1 False 1475 mRNA 0.43 8 17732094 17745773

Neighbor

gene id symbol gene type direction distance location
LOC111192980 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding upstream 12236 17707970 ~ 17719858 (+)
LOC111192975 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding upstream 29179 17690206 ~ 17702915 (+)
LOC111192910 cacng5b,LOC108437158,LOC107556612,LOC107698772,LOC107729207,LOC107664435 coding upstream 149966 17568799 ~ 17582128 (+)
LOC111192909 si:ch73-374l24.1,LOC108437159,LOC108259727,LOC107556610,LOC107698783 coding upstream 175541 17309065 ~ 17556553 (+)
LOC103035087 mafga,LOC107739593,LOC107556599,LOC107729585,LOC107701907 coding upstream 920864 16783913 ~ 16811230 (+)
LOC111192970 LOC108437139 coding downstream 2855 17748628 ~ 17764121 (+)
LOC111192968 NA coding downstream 23155 17768928 ~ 17780592 (+)
amn NA coding downstream 58511 17804284 ~ 17805826 (+)
otop2 otop2 coding downstream 114444 17860217 ~ 17879272 (+)
LOC111192979 NA coding downstream 178573 17924346 ~ 17929849 (+)
G64595 NA non-coding upstream 53652 17677928 ~ 17678442 (+)
G64586 NA non-coding upstream 57933 17622861 ~ 17674161 (+)
G64579 NA non-coding upstream 109422 17565712 ~ 17622672 (+)
G64583 NA non-coding upstream 135965 17588922 ~ 17596129 (+)
G64580 NA non-coding upstream 166637 17562563 ~ 17565457 (+)
G64710 NA non-coding downstream 23474 17769247 ~ 17815728 (+)
G64709 NA non-coding downstream 34909 17780682 ~ 17815649 (+)
G64753 NA non-coding downstream 211840 17957613 ~ 18008671 (+)
G64754 NA non-coding downstream 226806 17972579 ~ 18061330 (+)
G64760 NA non-coding downstream 253602 17999375 ~ 18000064 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 12182 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 843899 16833290 ~ 16888195 (+)
G64449 NA other upstream 856153 16873087 ~ 16875941 (+)
G64431 NA other upstream 978534 16753043 ~ 16753560 (+)
G64289 NA other upstream 1289645 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 810355 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1477436 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1531029 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1534519 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 2034890 19780663 ~ 19794325 (+)

Expression


Co-expression Network