LOC103035713 (LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364)


Basic Information

Item Value
gene id LOC103035713
gene name LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18687257 ~ 18706546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671430.1
GCGGGCGGTGCTGCAGGAGTTAGCGGGGCTCTGTGAGAGGGTCAGCCGGGGGAGGAGCGCTTCACGGCGGTTGTTTGGCAACAAACTCCTCGGCGTCTAACGCTAAAGTCtgcgggagtgtgtgtgtgtgagtgttagctaactatgctaagctaaactatgctaagctaagctgagctgaggtaaatgttagTCAGTAAGATAACCaagcttagctaagctaacggcaGCAGCTGCTGCTTTCTCCGTTTTACcacagttagctaactagcttagcgATTGTTTTAATGACATTTCTCCACATTTGGAGGTTCGCCACCCATTTTTTATCGGTAGTTAACGTTATTATTTAATACTtaattagctagatagctagcttcACCTGCTAAACTTGAAGAATGAACGTCCCGAAAAGCGGCTACCGGGTTTTCTCCGCCAACTCTACCCCTGCCTGCACCGAACTTGCCAAGAAAATCACAGAgcGCCTTGGAGTGGAGCTGGGAAAATCTGTGGTCTACCAGGAGGCTAACACAGAAACCAGAGTCGATGTCAAAGAGTCCGTCAGAGGCCAATCCATCTTCATCATCCAAACAATTCCCAGAGATGTGAACACAGCTATCATGGAGATGCTGGTCATGGCGTATGCACTTAAAACCTCCTGTGCCAAAAACATTATCGGAGTTATCCCATACTTCCCTTACAGTAAACAGTGCAAGATGAGGAAGAGAGGATCCATCGTGTGTAAACTTCTGGCGTCCATGCTGGCCAAAGCAGGTTTGTCTCACATCATCACCATGGACCTCCATCAGAAGGAGATCCAGGGGTTCTTCAGCTTCCCCGTGGATAATCTGCGCGCCTCCCCGTTCCTCCTACAGTACATCCAAGAAGAGATCCCCGACTACAGAAATGCCATTATTGTTGCCAAGTCCCCTTCTGCTGCAAAGagGGCTCAGTCGTACGCTGAGCGGTTGCGTTTGGGTCTGGCTGTAATTCACGGGGAGGCGCAGTGCTCTGAATCCGACATGGCCGACGGACGCCACTCCCCTCCCTGCGTCCGCAACACCAGCGGCCACCCCGGACTGGAGCTGCCATGCAAGCAACAAGCTCCGTTCCCAGGCATAGAGCTCCCAATAATGATGGCCAAGGAGAAACCGCCCATCACCGTGGTGGGAGACGTGGGAGGACGCATCGCCATCATTATCGATGACATCATTGATGACGTGGAGGATTttgtagcagcagcagagatCCTGAAGGAGAGAGGAGCGTATAAGATCTATATCATGGCGACTCACGGCCTGCTGTCTGCTGACGCCCCGCGCCTCATCGAGGAGTCCGCCATCGACGAAGTGGTAGTGACCAACACCGTTCCTCACGAGGTGCAGAAGCTGCAGTGCCCGAAGATCAAGACCGTGGACGTCAGCATGATCCTGGCCGAAGCGATACGCCGCATCCACAACGGCGAGTCCATGGCCTACCTGTTCCGCAACATCACTGTAGATGATTAGAGGACAGGTGGAGGTGAGGCTCCTCCCACTGTGAACCTTCTAACAGTGccaagtgtttctaataacaCACCTTAAACCAGTTCAACAGTACAACAGTAAAAGTAGAAAAGCTTCAGGCCTAAAGCAATTTTACCCCATTTACTCTTCTGCAGTCCCCAGTTTATCTGCACTGCTTCCAATGAGTGAGTTTACCTGCACTTCATAATCAGATTATATTATCTGAttataatcagattactgcTGTTATCTCATTATTCAAGttcatttaaacatgttaaTACTTAAAACTCAGATTttctaaaaatctgattaatatCTGACTTTCAATGTAAACTGTGACTGTTCCGATTATCTGATTACCCAAGTTCATGGAAATGCATTAACCGTATTACTGTCTCAGATGTTATGtagtaatcagattataaaaTGTTGCCAAATATCGGTAGAATACAGACACAACACCAGTGTTCCACAGTAATCTGATTATGAAAACGTGTTGATCGAATTTCTGACCGTATTAACTTTGGTATTAACTTAAAATCTGATTATCTTCTATTATCTGATTATAGAAGTTCATGGTAATGttgttctgcagtaatcaggttataaaaaaaagcatataaacATGTTAATTGGATTACAGACAGACAATCTGATTACTGCCTGACTCATGTAAACAATGAGTTTTCACGTTATCTGATTACCCATGTTCATGTAAATGTGTTGATTGGATTTTTGCCCATATTAACTTTGACGTTTAACTTAAATCTGATTATCTTCCATTATCTGATTATTGATGTTCATGTAGATGTGTTGACACAGATTGGCACAGATTTGGAATTGTGTGTGAACACCTTGATCAGATTATTAACCGTATTAACTTTAACAGTTTAGAAAATCTTTTGTTctacagtaatcagattataaaaAAGCATGTAAACATGTTGATTGGATTACTGACAAAATTGGATGTTCTGAAAATCTGATTACTGTCCTGACTCATGTTATCTGATTATTGATATCCATGTAAATGTGTTGAACCGATTACTGACGGTATTAACTTCGATAAAATCTGATTATATTGTTGGCTGAGTGCGTTAATCGTATTTCTGACGGACTCTGATGATAAattctgcagtaatcagattttgaAGTGCAGGAAaacgctctgattggctgcagcgGTACCTCCTGTATGTCGTTCGATTGTGTTCGTGTATTTGATTGTAGGCTGCACCGGCTCCTCTGTATTTA
>XM_022671432.1
GGTGCTGCAGGAGTTAGCGGGGCTCTGTGAGAGGGTCAGCCGGGGGAGGAGCGCTTCACGGCGGTTGTTTGGCAACAAACTCCTCGGCGTCTAACGCTAAAGTCtgcgggagtgtgtgtgtgtgagtgttagctaactatgctaagctaaactatgctaagctaagctgagctgaggtaaatgttagTCAGTAAGATAACCaagcttagctaagctaacggcaGCAGCTGCTGCTTTCTCCGTTTTACcacagttagctaactagcttagcgATTGTTTTAATGACATTTCTCCACATTTGGAGGTTCGCCACCCATTTTTTATCGGTAGTTAACGTTATTATTTAATACTtaattagctagatagctagcttcACCTGCTAAACTTGAAGAATGAACGTCCCGAAAAGCGGCTACCGGGTTTTCTCCGCCAACTCTACCCCTGCCTGCACCGAACTTGCCAAGAAAATCACAGAgcGCCTTGGAGTGGAGCTGGGAAAATCTGTGGTCTACCAGGAGGCTAACACAGAAACCAGAGTCGATGTCAAAGAGTCCGTCAGAGGCCAATCCATCTTCATCATCCAAACAATTCCCAGAGATGTGAACACAGCTATCATGGAGATGCTGGTCATGGCGTATGCACTTAAAACCTCCTGTGCCAAAAACATTATCGGAGTTATCCCATACTTCCCTTACAGTAAACAGTGCAAGATGAGGAAGAGAGGATCCATCGTGTGTAAACTTCTGGCGTCCATGCTGGCCAAAGCAGGTTTGTCTCACATCATCACCATGGACCTCCATCAGAAGGAGATCCAGGGGTTCTTCAGCTTCCCCGTGGATAATCTGCGCGCCTCCCCGTTCCTCCTACAGTACATCCAAGAAGAGATCCCCGACTACAGAAATGCCATTATTGTTGCCAAGTCCCCTTCTGCTGCAAAGagGGCTCAGTCGTACGCTGAGCGGTTGCGTTTGGGTCTGGCTGTAATTCACGGGGAGGCGCAGTGCTCTGAATCCGACATGGCCGACGGACGCCACTCCCCTCCCTGCGTCCGCAACACCAGCGGCCACCCCGGACTGGAGCTGCCATTAATGATGGCCAAGGAGAAACCGCCCATCACCGTGGTGGGAGACGTGGGAGGACGCATCGCCATCATTATCGATGACATCATTGATGACGTGGAGGATTttgtagcagcagcagagatCCTGAAGGAGAGAGGAGCGTATAAGATCTATATCATGGCGACTCACGGCCTGCTGTCTGCTGACGCCCCGCGCCTCATCGAGGAGTCCGCCATCGACGAAGTGGTAGTGACCAACACCGTTCCTCACGAGGTGCAGAAGCTGCAGTGCCCGAAGATCAAGACCGTGGACGTCAGCATGATCCTGGCCGAAGCGATACGCCGCATCCACAACGGCGAGTCCATGGCCTACCTGTTCCGCAACATCACTGTAGATGATTAGAGGACAGGTGGAGGTGAGGCTCCTCCCACTGTGAACCTTCTAACAGTGccaagtgtttctaataacaCACCTTAAACCAGTTCAACAGTACAACAGTAAAAGTAGAAAAGCTTCAGGCCTAAAGCAATTTTACCCCATTTACTCTTCTGCAGTCCCCAGTTTATCTGCACTGCTTCCAATGAGTGAGTTTACCTGCACTTCATAATCAGATTATATTATCTGAttataatcagattactgcTGTTATCTCATTATTCAAGttcatttaaacatgttaaTACTTAAAACTCAGATTttctaaaaatctgattaatatCTGACTTTCAATGTAAACTGTGACTGTTCCGATTATCTGATTACCCAAGTTCATGGAAATGCATTAACCGTATTACTGTCTCAGATGTTATGtagtaatcagattataaaaTGTTGCCAAATATCGGTAGAATACAGACACAACACCAGTGTTCCACAGTAATCTGATTATGAAAACGTGTTGATCGAATTTCTGACCGTATTAACTTTGGTATTAACTTAAAATCTGATTATCTTCTATTATCTGATTATAGAAGTTCATGGTAATGttgttctgcagtaatcaggttataaaaaaaagcatataaacATGTTAATTGGATTACAGACAGACAATCTGATTACTGCCTGACTCATGTAAACAATGAGTTTTCACGTTATCTGATTACCCATGTTCATGTAAATGTGTTGATTGGATTTTTGCCCATATTAACTTTGACGTTTAACTTAAATCTGATTATCTTCCATTATCTGATTATTGATGTTCATGTAGATGTGTTGACACAGATTGGCACAGATTTGGAATTGTGTGTGAACACCTTGATCAGATTATTAACCGTATTAACTTTAACAGTTTAGAAAATCTTTTGTTctacagtaatcagattataaaaAAGCATGTAAACATGTTGATTGGATTACTGACAAAATTGGATGTTCTGAAAATCTGATTACTGTCCTGACTCATGTTATCTGATTATTGATATCCATGTAAATGTGTTGAACCGATTACTGACGGTATTAACTTCGATAAAATCTGATTATATTGTTGGCTGAGTGCGTTAATCGTATTTCTGACGGACTCTGATGATAAattctgcagtaatcagattttgaAGTGCAGGAAaacgctctgattggctgcagcgGTACCTCCTGTATGTCGTTCGATTGTGTTCGTGTATTTGATTGTAGGCTGCACCGGCTCCTCTGTATTTA

Function

NR:

description
PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671430.1 True 2762 mRNA 0.44 11 18687257 18706546
XM_022671432.1 False 2717 mRNA 0.44 10 18687263 18706546

Neighbor

gene id symbol gene type direction distance location
LOC107197347 NA coding upstream 4141 18669432 ~ 18683116 (+)
LOC111192972 NA coding upstream 17823 18657276 ~ 18669434 (+)
LOC111192977 NA coding upstream 32568 18652128 ~ 18654689 (+)
LOC103027278 NA coding upstream 53014 18631412 ~ 18634243 (+)
LOC111192973 NA coding upstream 435906 18215692 ~ 18251351 (+)
LOC111192965 LOC108435873 coding downstream 283971 18990517 ~ 19019268 (+)
LOC111192912 NA coding downstream 470456 19177002 ~ 19178587 (+)
LOC103043906 LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444 coding downstream 561876 19268422 ~ 19271847 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 580289 19286835 ~ 19305457 (+)
cd36 NA coding downstream 661968 19368514 ~ 19399220 (+)
G64980 NA non-coding upstream 71099 18536667 ~ 18616158 (+)
G64991 NA non-coding upstream 117767 18567027 ~ 18569490 (+)
G64834 NA non-coding upstream 181530 18504951 ~ 18505727 (+)
G64816 NA non-coding upstream 262928 18402077 ~ 18424329 (+)
G65019 NA non-coding downstream 5068 18711614 ~ 18759292 (+)
G65044 NA non-coding downstream 85636 18792182 ~ 18840564 (+)
G65053 NA non-coding downstream 127413 18833959 ~ 18834854 (+)
G65116 NA non-coding downstream 194906 18901452 ~ 18908686 (+)
G65122 NA non-coding downstream 238780 18945326 ~ 19032751 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 63758 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 967345 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1799062 16833290 ~ 16888195 (+)
G64449 NA other upstream 1811316 16873087 ~ 16875941 (+)
G64431 NA other upstream 1933697 16753043 ~ 16753560 (+)
LOC103045528 NA other downstream 516663 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 570256 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 573746 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1074117 19780663 ~ 19794325 (+)
G65565 NA other downstream 2250589 20957135 ~ 20957635 (+)

Expression


Co-expression Network