tspan10


Basic Information

Item Value
gene id tspan10
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18586569 ~ 18590070 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671433.1
CTGACTGCTGCCACTGACCGCCCGAGCTGGCACTGACTGTTGGCACTGACTGTTGGCACTGACTGTTGGCACTGACTGTTGGCACTGACCGTTGGCACTGACCGTTGGCGCAGTAAGTCAGGGGCAGCAGTATGAGATGAGCCGCTCTTCGGTTTTGAGGAGGTTCCCCTTTTTCTGGAAACGAGGGAATAATATCCAGGATGAAGAGACCAGACCCCTCGTACCAAAGGAAGACCCTCAGGTGCGTCACCCCTCTTCTGCACCCGGGTCGGGTACGGACGACAGCTCCGAGAGCAAGACGGACTCCAGCTCCTCCAGCCGTGAATACGGAAGCAGCAGCAGGACGTTCCTGAGCCCGCGGAGCAGCAGGACCTCCAGGCTGACGGATTACCTGCTGAAGTACGTCCTGTTCTCCAGTAACCTGCTGTTCACGGCGCTGGGTCTGGCCATGCTGGGGCTCGGGCTCTGGGGGCTCCTCAGTAAGGAGTCCTTCTCCCAGGAGAAGCTGGGGAGTCTGGGTACGGACCCCATGCTGCTGTTCGTGTTCCTGGGTCTGGTTCTGACGCTGCTCTGCGTGACCGGCTGCGTCGGCGCCGTGCGGGAGAACTACTGCCTGCTCCGGATCTTCTCCGTGGTTCTGCTGGCGCTGGTGGCGGCGCAGGTTCTGGCGGCCATCGTGGCGTACGGTCTGCAGGGCCGTATCGCCGACTTCCTGCGTACGGGAATGCTGACCGCCATGGCGCGCTACCAGGACGACCTGGACATGAGGTTCATCACCGACGAGATCCAGACCGGCCTGCAGTGCTGCGGCGCCGAAAACTACCGGGACTGGCAGATCAACAGCTACTTTAACTGCTCGGCTCCGGGAGTGCAGTCCTGCAGTGTTCCTGCGTCCTGCTGTGTGGATCCTCTGGAGAACGGGACGGTGTGGAACTCTCAGTGTGGGTTTGGAGCTCTGCAGCTGGACGAGTTCTCGGCTCAGAGCGTGATATTTCTGGGCGGGTGTCTGGGCAGCATCTCGCGCTGGATCCAGCAGCACTCCGGACTCATCAGCACCGTGGTGGTCGTTCTACTGGGGGTTCAGATCATCACGCTGGTTATAACCACACGCCTGCTGGACAGGATCCAGTGGAACAGAGCTCAAGCTCGTCAAGGACTTGTGAGAACCTGATGATACGTACAGTATCACTGATATAAACACTGCGAGCTGCGAGGAGACCTACCGTATTAATATCTGTACTATACTGTGTGTAGATAGACCTGCCTTCTGGTCTTATGGtgctacataaaataaaaaaattaccgtatttttcgcactataaggagcatttaaaatactttcattttcccaa

Function

GO: NA

KEGG:

id description
K17351 TSPAN10; tetraspanin-10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671433.1 True 1352 mRNA 0.57 4 18586569 18590070

Neighbor

gene id symbol gene type direction distance location
LOC103028209 NA coding downstream 11400 18567677 ~ 18575169 (-)
LOC103028836 NA coding downstream 35596 18538903 ~ 18550973 (-)
LOC103034879 usp36,LOC107717487 coding downstream 49826 18489652 ~ 18536743 (-)
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding downstream 230074 18353333 ~ 18356495 (-)
hid1 hid1,LOC107710705,LOC107698779 coding downstream 665758 17884620 ~ 17920811 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding upstream 127432 18717502 ~ 18718630 (-)
LOC103035518 nptx1l,LOC108435874 coding upstream 521063 19111133 ~ 19121460 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding upstream 819228 19409298 ~ 19515383 (-)
lhfpl3 lhfpl3 coding upstream 1075489 19665559 ~ 19714443 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding upstream 1142685 19732755 ~ 19738419 (-)
G65069 NA non-coding downstream 4553 18581608 ~ 18582016 (-)
G65067 NA non-coding downstream 26021 18560128 ~ 18560548 (-)
G64959 NA non-coding downstream 140802 18444626 ~ 18445767 (-)
G64948 NA non-coding downstream 258109 18327721 ~ 18328460 (-)
G64936 NA non-coding downstream 356086 18199063 ~ 18230483 (-)
G65066 NA non-coding upstream 29641 18619711 ~ 18623603 (-)
G65064 NA non-coding upstream 115070 18705140 ~ 18709436 (-)
G65096 NA non-coding upstream 121510 18711580 ~ 18753784 (-)
G65102 NA non-coding upstream 169730 18759800 ~ 18760297 (-)
G65103 NA non-coding upstream 170301 18760371 ~ 18816516 (-)
G64886 NA other downstream 655399 17928507 ~ 17931170 (-)
LOC103043390 NA other downstream 897257 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 922008 17535296 ~ 17664561 (-)
G64492 NA other downstream 1698666 16882335 ~ 16887903 (-)
G64387 NA other downstream 2000922 16585065 ~ 16585647 (-)
LOC111192976 NA other upstream 34805 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 48237 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 308115 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 690232 19280302 ~ 19284032 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other upstream 715917 19305987 ~ 19370708 (-)

Expression


Co-expression Network