LOC111192970 (LOC108437139)


Basic Information

Item Value
gene id LOC111192970
gene name LOC108437139
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17748628 ~ 17764121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671434.1
TTCAGTCTGAAACCTGCGCCTTATTAACAGAGACCAGATATTTGTTCTCTGGAAAGGTTAAGAAGAGCAGTCACCGTATCTAAGCCCCCGTTTTCCTGCCAATCTGAAGAGAAGGACAACATGGTGCTTGCACAGAGAATTCTGAATGTTTTATGCATCATGTCATATTTAATTGCATGTTCCGATGTTGTTGCGGAAAATACAACATGCTTTTCACGCCGATGTCTGGCTAATGAAATGATCGCTAAAGAGCTGTTCAGTCCTCCTCAGCCACCATCCTGCGCTGTTAAAGTGAACCTCACCTCCATCCAGTATGAAACCCTGTCTGTGgataCAAAAACCCTGCGTTTCACAAGCCGCATCAAAATTGAAATGGAATGGAAGGATCCAGACCTGGCATGGACCGACTCGCAGTACGAATTTACAGAACTGATGCTACCGGTCGACAAAATCTGGACACCAGACATGACAGTGGACAATGCAGTGGAAACAGAGGTCAAACCAGTAAATACTGATATACTGGTGAGAAAGGATGGCACTGTGGAGCACTCCATCCAGATGTACACAACCGTCGTGTGTGGAATCAACCTCTTTAACTACCCCTTTGTGAAGGACTCTTGCCCTGTGGCTCTTAACGGATGGAGTCAAAACAATTGTGGCCTGCGTTTCGAGTACGGGTCAGTAACTGCAGTGGGACAAAGTCGAGGAGAATGGCAGACGGTATCAGTGGTGCTCACCAGTGACCAAGGAAAGTTGGATCGGAACTATATCTTAGTCACAATGTCCATTAACCCCTTTAACACCATCGTGACGCTAATCCTGCCCACTGTGCTGATCATGCTGGCTGATCTGGTGAGTTTCGCTCTGCCGCTGGAAGGAGGAAAACGCAGTTCCTTTAAAATAACGCTGGTGCTGAGCTTCACCATGTCGCTGCTCATCCTCACCGACCACCTGCCCGATACCGGCCTCTGCAGCCCCCTCATCCGTTATCATTTCTGTATCTGCTTGGTTTTTCTGGTGCTGAGCTTGCTGGCGTCTATGATCTTCACACGGATGGCTTCAGACGGCAGCATCTTCTCCTGCACGTTACCGAAATGTGGATTAAAAAAAACGATATCAGCAAACATGATAAACTGCAAGATTTAAGTCTGAGTGGTATCTCCACGGTTTCGGGTGAGTTCACGGAGAAGGCCTCGATCCAGAATGTGGTGACGTTCTTGGAGAACATGGAGAAAGCCAACGAGGAGGCAAAGAAGAAGCAGAACCTCGCCAATCGCTTCGACAGAATCTGCTTCTGGATCTATTTCTGCACTGATGTCGTTTACGTCATATGTTTAATCGCCATCACCAGGACAGAGTTTTGCAAAATTAATAATCTGGATTTCTGGTAGGAGGTGTAACAGAGTACGGGTTACAACTTATTTTATCAATAACTATATTCTGATtcttttctctgctgaaactgagactcagttcttaatcatgttaatctatagcgctaaaggcta

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671434.1 True 1508 mRNA 0.46 10 17748628 17764121

Neighbor

gene id symbol gene type direction distance location
LOC107197389 NA coding upstream 2855 17732094 ~ 17745773 (+)
LOC111192980 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding upstream 28770 17707970 ~ 17719858 (+)
LOC111192975 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding upstream 45713 17690206 ~ 17702915 (+)
LOC111192910 cacng5b,LOC108437158,LOC107556612,LOC107698772,LOC107729207,LOC107664435 coding upstream 166500 17568799 ~ 17582128 (+)
LOC111192909 si:ch73-374l24.1,LOC108437159,LOC108259727,LOC107556610,LOC107698783 coding upstream 192075 17309065 ~ 17556553 (+)
LOC111192968 NA coding downstream 4807 17768928 ~ 17780592 (+)
amn NA coding downstream 40163 17804284 ~ 17805826 (+)
otop2 otop2 coding downstream 96096 17860217 ~ 17879272 (+)
LOC111192979 NA coding downstream 160225 17924346 ~ 17929849 (+)
LOC103040205 NA coding downstream 220844 17984965 ~ 18132010 (+)
G64595 NA non-coding upstream 70186 17677928 ~ 17678442 (+)
G64586 NA non-coding upstream 74467 17622861 ~ 17674161 (+)
G64579 NA non-coding upstream 125956 17565712 ~ 17622672 (+)
G64583 NA non-coding upstream 152499 17588922 ~ 17596129 (+)
G64580 NA non-coding upstream 183171 17562563 ~ 17565457 (+)
G64710 NA non-coding downstream 5126 17769247 ~ 17815728 (+)
G64709 NA non-coding downstream 16561 17780682 ~ 17815649 (+)
G64753 NA non-coding downstream 193492 17957613 ~ 18008671 (+)
G64754 NA non-coding downstream 208458 17972579 ~ 18061330 (+)
G64760 NA non-coding downstream 235254 17999375 ~ 18000064 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 28716 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 860433 16833290 ~ 16888195 (+)
G64449 NA other upstream 872687 16873087 ~ 16875941 (+)
G64431 NA other upstream 995068 16753043 ~ 16753560 (+)
G64289 NA other upstream 1306179 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 792007 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1459088 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1512681 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1516171 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 2016542 19780663 ~ 19794325 (+)

Expression


Co-expression Network